Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 0.0e+00 1223.8 921 100.0
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 9.0e-285 983.8 924 89.8
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 3.8e-166 589.7 990 57.8
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 4.7e-164 582.8 937 56.5
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 9.1e-160 568.5 976 63.3
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 1.4e-155 554.7 965 63.9
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 5.2e-155 552.7 978 59.7
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 4.8e-153 546.2 966 61.1
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 3.8e-150 536.6 973 61.2
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 4.5e-143 513.1 933 49.7
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 2.2e-142 510.8 995 57.4
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 4.7e-140 503.1 996 60.5
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 1.5e-138 498.0 980 53.7
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 4.9e-129 466.5 1066 50.6
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 3.4e-90 337.4 953 49.1
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 5.4e-88 330.1 961 50.1
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 6.0e-87 326.6 953 51.3
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 4.8e-84 317.0 985 45.0
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 1.5e-82 312.0 982 47.0
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 7.1e-80 303.1 959 46.9
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 1.2e-79 302.4 835 49.5
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 4.3e-77 293.9 963 46.6
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 9.6e-77 292.7 960 46.5
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 8.1e-76 289.7 294 59.5
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 5.3e-75 287.0 1019 49.9
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 2.9e-73 281.2 964 46.4
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 5.1e-70 270.4 253 64.0
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 5.1e-70 270.4 955 46.0
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 1.5e-69 268.9 976 47.7
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 1.3e-68 265.8 949 48.3
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 2.8e-68 264.6 292 57.5
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 2.8e-68 264.6 950 44.8
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 2.8e-68 264.6 938 48.7
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 6.2e-68 263.5 294 56.1
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 1.4e-67 262.3 828 49.5
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 2.4e-67 261.5 291 56.7
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 3.1e-67 261.2 258 60.9
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 4.0e-67 260.8 955 50.8
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 2.6e-66 258.1 285 58.2
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 7.6e-66 256.5 956 43.6
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 7.6e-66 256.5 956 43.6
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 2.9e-65 254.6 937 49.7
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 8.4e-65 253.1 936 46.6
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 1.9e-64 251.9 964 50.8
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 2.5e-64 251.5 938 50.0
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 3.2e-64 251.1 293 54.3
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 5.5e-64 250.4 259 59.1
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 7.1e-64 250.0 286 54.9
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 1.6e-63 248.8 936 46.2
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 6.0e-63 246.9 234 61.1
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 7.9e-63 246.5 291 55.0
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 7.9e-63 246.5 260 58.8
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.3e-62 245.0 935 50.7
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 6.7e-62 243.4 258 57.8
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 8.7e-62 243.0 1032 42.0
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.9e-61 241.9 938 46.9
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 4.3e-61 240.7 288 56.6
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 5.7e-61 240.4 276 56.9
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 9.7e-61 239.6 956 43.4
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 1.3e-60 239.2 284 55.6
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 1.6e-60 238.8 282 53.9
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 1.6e-60 238.8 944 46.1
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.8e-60 238.0 938 46.8
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 1.1e-59 236.1 257 56.0
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 1.4e-59 235.7 236 59.3
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 9.0e-59 233.0 267 54.3
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 9.0e-59 233.0 247 56.3
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 2.6e-58 231.5 301 54.2
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 2.6e-58 231.5 845 47.7
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 3.4e-58 231.1 267 55.1
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 3.4e-58 231.1 289 54.3
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 1.0e-57 229.6 307 52.8
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 1.3e-57 229.2 254 57.1
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 2.2e-57 228.4 267 54.7
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 2.2e-57 228.4 1035 40.9
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 2.9e-57 228.0 189 67.7
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 2.9e-57 228.0 259 54.8
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 3.2e-56 224.6 973 44.3
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 3.2e-56 224.6 965 50.3
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 3.2e-56 224.6 1044 41.5
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 4.2e-56 224.2 961 45.8
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 1.6e-55 222.2 291 51.2
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 1.0e-54 219.5 287 52.6
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 1.0e-54 219.5 961 48.4
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 6.7e-54 216.9 237 56.1
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 2.5e-53 214.9 285 49.8
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 2.5e-53 214.9 285 49.8
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 5.7e-53 213.8 166 69.3
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 9.7e-53 213.0 239 59.0
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 3.7e-52 211.1 161 72.0
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 6.3e-52 210.3 1000 41.3
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 6.3e-52 210.3 1018 40.6
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 1.4e-51 209.1 994 40.3
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 1.8e-51 208.8 987 43.4
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 2.4e-51 208.4 948 40.3
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 4.1e-51 207.6 300 49.3
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 6.9e-51 206.8 160 70.0
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 1.2e-50 206.1 315 46.7
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 1.2e-50 206.1 300 49.0
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 3.4e-50 204.5 963 41.6
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 7.7e-50 203.4 192 58.3
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 2.9e-49 201.4 977 44.7
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 1.1e-48 199.5 285 51.6
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 2.5e-48 198.4 942 47.0
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 3.2e-48 198.0 297 51.2
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 3.2e-48 198.0 248 48.4
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 3.2e-48 198.0 257 50.6
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 4.2e-48 197.6 262 51.1
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 7.2e-48 196.8 319 46.4
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 5.1e-46 190.7 157 63.7
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 2.6e-45 188.3 233 54.5
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 4.1e-43 181.0 160 61.9
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 5.3e-43 180.6 139 69.8
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 1.0e-41 176.4 968 40.5
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 1.8e-38 165.6 175 53.1
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 3.0e-38 164.9 212 48.1
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 6.3e-36 157.1 720 44.2
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 1.2e-31 142.9 153 54.9
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 2.0e-29 135.6 157 51.6
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 4.1e-27 127.9 201 42.3
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 1.0e-25 123.2 128 55.5
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 6.3e-20 104.0 182 40.1
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 1.4e-19 102.8 75 73.3
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 5.9e-18 97.4 169 39.6
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 3.8e-17 94.7 126 50.0
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 2.1e-15 89.0 61 72.1
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 1.7e-09 69.3 58 62.1
Cpa.g.sc81.96 Carica papaya HOM05D005166 ORTHO05D006120 6.8e-06 57.4 415 35.7


User provided reference genes

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