Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 8.0e-76 287.0 139 100.0
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 3.8e-62 241.5 114 100.0
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 1.5e-61 239.6 114 99.1
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 1.5e-61 239.6 114 99.1
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 3.6e-60 235.0 114 97.4
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 3.6e-60 235.0 114 97.4
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 3.6e-60 235.0 114 97.4
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 3.6e-60 235.0 114 97.4
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 3.6e-60 235.0 114 97.4
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 3.6e-60 235.0 114 97.4
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 3.6e-60 235.0 114 97.4
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 4.7e-60 234.6 114 96.5
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 4.7e-60 234.6 114 96.5
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 4.7e-60 234.6 114 96.5
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 6.1e-60 234.2 114 95.6
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 6.1e-60 234.2 114 95.6
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 6.1e-60 234.2 114 95.6
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 6.1e-60 234.2 114 95.6
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 6.1e-60 234.2 114 95.6
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 6.1e-60 234.2 114 95.6
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 6.1e-60 234.2 114 95.6
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 8.0e-60 233.8 114 96.5
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 8.0e-60 233.8 114 96.5
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 8.0e-60 233.8 114 96.5
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.0e-59 233.4 114 95.6
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 1.0e-59 233.4 114 95.6
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 1.0e-59 233.4 114 95.6
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 1.0e-59 233.4 114 95.6
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 1.0e-59 233.4 114 96.5
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 1.0e-59 233.4 114 96.5
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 1.0e-59 233.4 114 95.6
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 1.0e-59 233.4 114 95.6
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 1.0e-59 233.4 114 95.6
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 1.0e-59 233.4 114 95.6
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 1.0e-59 233.4 114 95.6
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 1.0e-59 233.4 114 95.6
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 1.0e-59 233.4 114 96.5
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 1.0e-59 233.4 114 96.5
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 1.0e-59 233.4 114 96.5
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 1.0e-59 233.4 114 95.6
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 1.0e-59 233.4 114 96.5
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 1.4e-59 233.0 114 95.6
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 1.4e-59 233.0 114 94.7
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 1.4e-59 233.0 114 95.6
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 1.4e-59 233.0 113 97.3
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 1.8e-59 232.6 113 96.5
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 1.8e-59 232.6 113 96.5
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 1.8e-59 232.6 113 96.5
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 1.8e-59 232.6 113 96.5
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 1.8e-59 232.6 113 96.5
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 1.8e-59 232.6 113 96.5
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 1.8e-59 232.6 113 96.5
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 1.8e-59 232.6 113 96.5
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 1.8e-59 232.6 113 96.5
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 1.8e-59 232.6 113 96.5
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 1.8e-59 232.6 113 96.5
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 1.8e-59 232.6 113 96.5
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 1.8e-59 232.6 113 96.5
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 1.8e-59 232.6 113 96.5
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 1.8e-59 232.6 113 96.5
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 1.8e-59 232.6 113 96.5
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 1.8e-59 232.6 113 96.5
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 1.8e-59 232.6 113 96.5
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 1.8e-59 232.6 114 95.6
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 2.3e-59 232.3 114 94.7
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 2.3e-59 232.3 114 94.7
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 2.3e-59 232.3 114 94.7
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 2.3e-59 232.3 114 94.7
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 2.3e-59 232.3 114 94.7
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 2.3e-59 232.3 114 94.7
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 2.3e-59 232.3 114 94.7
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 3.0e-59 231.9 113 96.5
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 3.0e-59 231.9 114 95.6
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 3.0e-59 231.9 114 95.6
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 3.0e-59 231.9 113 96.5
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 3.0e-59 231.9 114 94.7
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 3.0e-59 231.9 114 94.7
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 3.0e-59 231.9 113 96.5
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 3.0e-59 231.9 113 95.6
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 3.0e-59 231.9 113 96.5
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 3.0e-59 231.9 114 94.7
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 3.0e-59 231.9 114 94.7
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 4.0e-59 231.5 113 95.6
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 4.0e-59 231.5 113 95.6
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 4.0e-59 231.5 114 93.9
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 4.0e-59 231.5 113 95.6
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 4.0e-59 231.5 113 95.6
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 4.0e-59 231.5 113 96.5
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 4.0e-59 231.5 114 95.6
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 5.2e-59 231.1 114 94.7
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 5.2e-59 231.1 114 94.7
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 5.2e-59 231.1 114 94.7
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 6.8e-59 230.7 114 93.9
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 6.8e-59 230.7 114 93.9
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 6.8e-59 230.7 114 93.9
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 6.8e-59 230.7 113 95.6
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 6.8e-59 230.7 114 95.6
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 6.8e-59 230.7 114 93.9
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 8.8e-59 230.3 113 95.6
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 8.8e-59 230.3 114 93.0
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 8.8e-59 230.3 113 94.7
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 8.8e-59 230.3 113 94.7
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 8.8e-59 230.3 113 95.6
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 8.8e-59 230.3 113 95.6
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 1.2e-58 229.9 113 94.7
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 1.2e-58 229.9 113 95.6
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 1.2e-58 229.9 113 95.6
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 1.2e-58 229.9 113 95.6
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 1.5e-58 229.6 114 93.0
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 2.0e-58 229.2 113 94.7
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 2.0e-58 229.2 114 93.0
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 2.6e-58 228.8 114 93.9
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 2.6e-58 228.8 114 93.9
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 2.6e-58 228.8 114 93.9
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 2.6e-58 228.8 113 95.6
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 2.6e-58 228.8 119 93.3
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 3.4e-58 228.4 114 93.9
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 4.4e-58 228.0 111 96.4
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 1.7e-57 226.1 119 91.6
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 2.8e-57 225.3 113 93.8
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 3.7e-57 224.9 114 92.1
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.2e-55 219.9 114 89.5
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.2e-55 219.9 114 89.5
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.2e-55 219.9 114 89.5
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 1.6e-55 219.5 114 90.4
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 5.9e-55 217.6 146 74.7
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 7.7e-55 217.2 114 88.6
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 1.7e-54 216.1 114 86.8
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 5.0e-54 214.5 114 85.1
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 6.6e-54 214.2 149 73.8
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 1.1e-53 213.4 114 85.1
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 2.8e-52 208.8 113 85.0
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 1.4e-51 206.5 114 84.2
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 4.0e-51 204.9 113 82.3
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 6.8e-51 204.1 114 80.7
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 9.8e-50 200.3 112 84.8
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 4.3e-45 184.9 114 73.7
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.0e-43 180.3 104 82.7
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 1.7e-41 172.9 113 75.2
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 1.7e-41 172.9 116 67.2
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 4.0e-35 151.8 87 81.6
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 1.3e-30 136.7 69 92.8
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 8.1e-28 127.5 61 95.1
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 2.9e-25 119.0 61 86.9
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 3.5e-23 112.1 56 92.9
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 5.6e-21 104.8 53 90.6
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 4.7e-20 101.7 52 90.4
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 1.2e-15 87.0 39 97.4
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.6e-15 86.7 47 85.1
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 7.8e-15 84.3 50 74.0
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 8.1e-12 74.3 51 74.5
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 1.1e-11 73.9 114 31.6
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 5.3e-11 71.6 38 89.5
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 6.4e-09 64.7 54 61.1
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 1.1e-08 63.9 31 93.5


User provided reference genes

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