Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SL03ST Arachis hypogaea HOM05D007127 ORTHO05D008803 1.6e-132 476.1 240 100.0
arahy.Tifrunner.gnm1.ann1.I2ZJD2 Arachis hypogaea HOM05D007127 ORTHO05D008803 1.4e-104 383.3 242 82.6
Glyma.18G074000 Glycine max HOM05D007127 ORTHO05D008803 4.1e-72 275.4 249 60.6
Lj6g0006308 Lotus japonicus HOM05D007127 ORTHO05D008803 5.6e-69 265.0 250 58.8
Ca_14836_v3 Cicer arietinum L. HOM05D007127 ORTHO05D008803 8.1e-68 261.2 242 59.5
Lalb_Chr15g0082331 Lupinus albus HOM05D007127 ORTHO05D008803 4.0e-67 258.8 244 60.2
Medtr3g060750 Medicago truncatula HOM05D007127 ORTHO05D008803 8.6e-62 241.1 241 56.8
TPR.G17936 Trifolium pratense HOM05D007127 ORTHO05D008803 6.2e-60 235.0 238 53.8
QL08p002654 Quercus lobata HOM05D007127 ORTHO05D008803 2.4e-56 223.0 218 54.6
GSVIVG01014748001 Vitis vinifera HOM05D007127 ORTHO05D008803 1.6e-55 220.3 222 53.2
Potri.001G467100 Populus trichocarpa HOM05D007127 ORTHO05D008803 2.7e-55 219.5 191 60.7
MD03G1036700 Malus domestica HOM05D007127 ORTHO05D008803 3.9e-54 215.7 215 54.9
CAN.G492.47 Capsicum annuum HOM05D007127 ORTHO05D008803 1.1e-53 214.2 218 51.8
Ciclev10009425m.g Citrus clementina HOM05D007127 ORTHO05D008803 1.1e-53 214.2 226 50.9
Thecc.07G007600 Theobroma cacao HOM05D007127 ORTHO05D008803 2.5e-53 213.0 200 57.5
Sabra16G0317000 Salix brachista HOM05D007127 ORTHO05D008803 4.3e-53 212.2 189 59.8
Sopen10g001820 Solanum pennellii HOM05D007127 ORTHO05D008803 5.6e-53 211.8 225 50.2
Eucgr.F03672 Eucalyptus grandis HOM05D007127 ORTHO05D008803 2.1e-52 209.9 191 58.1
Nn1g07579 Nelumbo nucifera HOM05D007127 ORTHO05D008803 4.8e-52 208.8 190 59.5
Oeu005465.2 Olea europaea HOM05D007127 ORTHO05D008803 8.1e-52 208.0 217 51.6
Solyc10g005870.4 Solanum lycopersicum HOM05D007127 ORTHO05D008803 1.1e-51 207.6 221 50.2
CsaV3_7G023830 Cucumis sativus L. HOM05D007127 ORTHO05D008803 1.8e-51 206.8 191 55.5
Dinv40887 Davidia involucrata HOM05D003312 ORTHO05D003792 2.4e-51 206.5 208 53.8
RcHm_v2.0_Chr5g0075531 Rosa chinensis HOM05D007127 ORTHO05D008803 3.1e-51 206.1 191 59.2
PSO210G6734 Papaver somniferum HOM05D007127 ORTHO05D008803 5.3e-51 205.3 235 51.9
Sp7g24510 Schrenkiella parvula HOM05D007127 ORTHO05D008803 5.3e-51 205.3 203 53.2
CARHR234140 Cardamine hirsuta HOM05D007127 ORTHO05D008803 6.9e-51 204.9 203 53.2
Carub.0007s1432 Capsella rubella HOM05D007127 ORTHO05D008803 1.2e-50 204.1 204 53.9
FAN25G0358 Fragaria x ananassa HOM05D007127 ORTHO05D008803 1.2e-50 204.1 191 58.1
Peaxi162Scf00339g00004 Petunia axillaris HOM05D007127 ORTHO05D008803 1.2e-50 204.1 224 50.0
BolC7t45986H Brassica oleracea HOM05D000491 ORTHO05D000359 1.5e-50 203.8 199 55.3
ClCG09G021550 Citrullus lanatus HOM05D007127 ORTHO05D008803 1.5e-50 203.8 191 56.5
DCAR_013258 Daucus carota HOM05D007127 ORTHO05D008803 1.5e-50 203.8 190 56.3
THA.LOC104811685 Tarenaya hassleriana HOM05D007127 ORTHO05D008803 1.5e-50 203.8 220 52.7
BcaC06g32738 Brassica carinata HOM05D007127 ORTHO05D008803 3.4e-50 202.6 198 55.6
BraA03t14746Z Brassica rapa HOM05D000491 ORTHO05D000359 3.4e-50 202.6 204 53.9
Thhalv10026261m.g Eutrema salsugineum HOM05D007127 ORTHO05D008803 3.4e-50 202.6 203 53.2
AT4G26555 Arabidopsis thaliana HOM05D007127 ORTHO05D008803 4.5e-50 202.2 215 51.6
MSTRG.7016 Avicennia marina HOM05D007127 ORTHO05D008803 4.5e-50 202.2 214 51.4
PGSC0003DMG400014371 Solanum tuberosum HOM05D007127 ORTHO05D008803 4.5e-50 202.2 230 47.8
Migut.M01626 Erythranthe guttata HOM05D007127 ORTHO05D008803 5.8e-50 201.8 224 50.9
MBI14_g43080_MAGBIO Magnolia biondii HOM05D007127 ORTHO05D008803 7.6e-50 201.4 187 57.2
AL7G26340 Arabidopsis lyrata HOM05D007127 ORTHO05D008803 1.3e-49 200.7 203 51.2
Gohir.D01G078500 Gossypium hirsutum HOM05D007127 ORTHO05D008803 1.3e-49 200.7 195 54.9
EL10Ac4g07544 Beta vulgaris HOM05D007127 ORTHO05D008803 1.7e-49 200.3 193 54.9
CANSAT11G1343 Cannabis sativa HOM05D007127 ORTHO05D008803 1.7e-49 200.3 231 48.5
Gohir.A01G094000 Gossypium hirsutum HOM05D007127 ORTHO05D008803 3.8e-49 199.1 195 54.4
SalBow8G4011 Salvia bowleyana HOM05D007127 ORTHO05D008803 4.9e-49 198.7 207 52.2
AUR62017126 Chenopodium quinoa HOM05D007127 ORTHO05D008803 8.4e-49 198.0 207 52.2
Haze_09871 Corylus avellana HOM05D007127 ORTHO05D008803 1.1e-48 197.6 298 41.6
PGR031G3625 Punica granatum HOM05D007127 ORTHO05D008803 1.1e-48 197.6 191 57.1
TWI39G0351 Tripterygium wilfordii HOM05D007127 ORTHO05D008803 1.1e-48 197.6 238 48.3
SGA_v2.0_scaffold171G38842 Striga asiatica HOM05D007127 ORTHO05D008803 2.4e-48 196.4 195 53.8
Gorai.002G103100 Gossypium raimondii HOM05D007127 ORTHO05D008803 4.2e-48 195.7 195 53.8
Hma1.2p1_0193F.1_g083963 Hydrangea macrophylla HOM05D007127 ORTHO05D008803 7.1e-48 194.9 191 52.9
Lsat_1_v5_gn_5_2120 Lactuca sativa HOM05D007127 ORTHO05D008803 3.5e-47 192.6 206 51.0
C07p55280 Brassica napus HOM05D007127 ORTHO05D008803 2.3e-46 189.9 254 46.1
A03p56780 Brassica napus HOM05D000491 ORTHO05D008803 3.9e-46 189.1 228 48.2
Lj8A180T97 Lonicera japonica HOM05D007127 ORTHO05D008803 3.9e-46 189.1 180 56.7
Aqoxy1G04096 Aquilegia oxysepala HOM05D007127 ORTHO05D008803 6.7e-46 188.3 192 54.7
HanXRQChr08g0232691 Helianthus annuus HOM05D007127 ORTHO05D008803 2.5e-45 186.4 187 54.5
Cc05_g15330 Coffea canephora HOM05D007127 ORTHO05D008803 3.3e-45 186.0 238 45.0
VMungo0540G0661 Vigna mungo HOM05D007127 ORTHO05D008803 3.7e-44 182.6 196 54.6
ATR0751G120 Amborella trichopoda HOM05D007127 ORTHO05D008803 6.2e-44 181.8 155 61.3
AUR62035684 Chenopodium quinoa HOM05D007127 ORTHO05D008803 8.1e-44 181.4 213 47.4
Aa31LG5G11910 Aethionema arabicum HOM05D007127 ORTHO05D008803 1.8e-43 180.3 155 60.0
ECA246G1683 Erigeron canadensis HOM05D007127 ORTHO05D008803 2.4e-43 179.9 192 51.6
Rhsim06G0232700 Rhododendron simsii HOM05D007127 ORTHO05D008803 3.1e-43 179.5 239 45.6
Zm00001eb205840 Zea mays HOM05D007127 ORTHO05D008803 5.8e-42 175.3 170 53.5
Os02g0199300 Oryza sativa ssp. japonica HOM05D007127 ORTHO05D008803 2.2e-41 173.3 157 55.4
Prupe.6G028700 Prunus persica HOM05D007127 ORTHO05D008803 2.9e-41 172.9 199 50.8
SEGI_17483 Sequoiadendron giganteum HOM05D007127 ORTHO05D008803 2.9e-41 172.9 187 50.3
FAN11G0992 Fragaria x ananassa HOM05D007127 ORTHO05D008803 5.5e-40 168.7 234 44.9
Actinidia10571 Actinidia chinensis HOM05D007127 ORTHO05D008803 2.1e-39 166.8 218 45.9
TAR627G0858 Trochodendron aralioides HOM05D007127 ORTHO05D008803 2.1e-39 166.8 168 55.4
Atru.BG.133.p Acer truncatum HOM05D007127 ORTHO05D008803 3.5e-39 166.0 140 59.3
Cpa.g.sc12.104 Carica papaya HOM05D007127 ORTHO05D008803 4.6e-39 165.6 140 60.7
Duzib213G0866 Durio zibethinus HOM05D007127 ORTHO05D008803 1.8e-38 163.7 175 50.9
vmacro11616 Vaccinium macrocarpon HOM05D007127 ORTHO05D008803 2.3e-38 163.3 218 45.9
AagrBONN_evm.TU.Sc2ySwM_368.1220 Anthoceros agrestis HOM05D007127 ORTHO05D008803 1.9e-37 160.2 160 49.4
Pp3c5_10020 Physcomitrium patens HOM05D007127 ORTHO05D008803 6.2e-36 155.2 186 44.1
Glyma.08G333000 Glycine max HOM05D007127 ORTHO05D008803 3.1e-35 152.9 127 63.0
RcHm_v2.0_Chr5g0075491 Rosa chinensis HOM05D007127 ORTHO05D008803 5.3e-35 152.1 146 55.5
FAN16G2471 Fragaria x ananassa HOM05D007127 ORTHO05D008803 9.0e-35 151.4 185 49.2
Hund01879 Selenicereus undatus HOM05D007127 ORTHO05D008803 4.2e-32 142.5 242 39.7
Phvul.006G059272 Phaseolus vulgaris HOM05D007127 ORTHO05D008803 4.3e-29 132.5 117 59.0
Actinidia30375 Actinidia chinensis HOM05D007127 ORTHO05D008803 1.6e-28 130.6 123 54.5
RcHm_v2.0_Chr5g0075521 Rosa chinensis HOM05D007127 ORTHO05D008803 6.3e-28 128.6 86 70.9
SMO356G0109 Selaginella moellendorffii HOM05D007127 ORTHO05D008803 2.4e-27 126.7 139 45.3
COL.COLO4_07744 Corchorus olitorius HOM05D007127 ORTHO05D008803 1.2e-26 124.4 193 39.9
HPP92_021913 Vanilla planifolia HOM05D007127 ORTHO05D008803 1.2e-26 124.4 178 38.8
CiPaw.11G207200 Carya illinoinensis HOM05D007127 ORTHO05D008803 1.5e-26 124.0 162 46.3
FAN16G1842 Fragaria x ananassa HOM05D000097 ORTHO05D008803 1.5e-26 124.0 149 48.3
Cfa021894 Carpinus fangiana HOM05D007127 ORTHO05D008803 7.6e-26 121.7 155 45.2
Psat5g167080 Pisum sativum HOM05D007127 ORTHO05D008803 5.0e-25 119.0 75 81.3
MELO3C028909.2 Cucumis melo HOM05D007127 ORTHO05D008803 1.8e-22 110.5 70 75.7
SalBow1G6811 Salvia bowleyana HOM05D007127 ORTHO05D008803 1.8e-22 110.5 159 41.5
Hma1.2p1_0193F.1_g083966 Hydrangea macrophylla HOM05D007127 ORTHO05D008803 1.5e-21 107.5 111 50.5
FvH4_3g42230 Fragaria vesca HOM05D007127 ORTHO05D008803 2.8e-20 103.2 129 49.6
Cre07.g315700 Chlamydomonas reinhardtii HOM05D007127 ORTHO05D008803 2.6e-18 96.7 171 32.7
Manes.09G155700 Manihot esculenta HOM05D007127 ORTHO05D008803 3.4e-18 96.3 131 45.0
CSS0033248 Camellia sinensis var. sinensis HOM05D007127 ORTHO05D008803 5.9e-18 95.5 53 83.0
CSS0046857 Camellia sinensis var. sinensis HOM05D007127 ORTHO05D008803 5.9e-18 95.5 53 83.0
Nitab4.5_0001622g0030 Nicotiana tabacum HOM05D007127 ORTHO05D008803 8.5e-17 91.7 150 36.0
MCO15G274 Micromonas commoda HOM05D007127 ORTHO05D008803 7.2e-16 88.6 151 35.1
CDE11G0730 Ceratophyllum demersum HOM05D007127 ORTHO05D008803 1.6e-15 87.4 117 42.7
Cre02.g095450 Chlamydomonas reinhardtii HOM05D007127 ORTHO05D008803 2.3e-14 83.6 162 30.9
Pp3c2_2300 Physcomitrium patens HOM05D007400 ORTHO05D009351 1.3e-09 67.8 214 28.5
MCO15G113 Micromonas commoda HOM05D007127 ORTHO05D008803 1.1e-08 64.7 152 28.3
PRCOL_00001142 Prasinoderma coloniale HOM05D007127 ORTHO05D008803 1.9e-08 63.9 157 27.4
CBR_g31701 Chara braunii HOM05D007127 ORTHO05D008803 1.6e-07 60.8 158 26.6
Carub.0007s2138 Capsella rubella HOM05D007400 ORTHO05D009351 2.1e-07 60.5 181 26.0
arahy.Tifrunner.gnm1.ann1.L1RKW0 Arachis hypogaea HOM05D007400 ORTHO05D009351 2.7e-07 60.1 252 23.8
Peaxi162Scf00149g01015 Petunia axillaris HOM05D007400 ORTHO05D009351 2.7e-07 60.1 192 24.0
Medtr1g061080 Medicago truncatula HOM05D007400 ORTHO05D009351 3.6e-07 59.7 189 24.3
arahy.Tifrunner.gnm1.ann1.ARB9WH Arachis hypogaea HOM05D007400 ORTHO05D009351 4.7e-07 59.3 252 23.4
Sopen02g018260 Solanum pennellii HOM05D007400 ORTHO05D009351 6.1e-07 58.9 147 28.6
ClCG01G009370 Citrullus lanatus HOM05D007400 ORTHO05D009351 8.0e-07 58.5 158 27.2
Atru.chr10.612 Acer truncatum HOM05D007400 ORTHO05D009351 1.0e-06 58.2 165 29.1
Ciclev10016614m.g Citrus clementina HOM05D007400 ORTHO05D009351 1.0e-06 58.2 164 28.7
AT4G19830 Arabidopsis thaliana HOM05D007400 ORTHO05D009351 1.4e-06 57.8 181 24.3
Aa31LG6G2310 Aethionema arabicum HOM05D007400 ORTHO05D009351 1.8e-06 57.4 199 24.6
CARHR226600 Cardamine hirsuta HOM05D007400 ORTHO05D009351 1.8e-06 57.4 89 34.8
Glyma.10G066600 Glycine max HOM05D007400 ORTHO05D009351 1.8e-06 57.4 175 24.6
Gorai.009G151100 Gossypium raimondii HOM05D007400 ORTHO05D009351 1.8e-06 57.4 186 25.8
Solyc02g069130.3 Solanum lycopersicum HOM05D007400 ORTHO05D009351 1.8e-06 57.4 147 27.9
Cre17.g733250 Chlamydomonas reinhardtii HOM05D001775 ORTHO05D008700 2.3e-06 57.0 148 34.5
MELO3C021776.2 Cucumis melo HOM05D007400 ORTHO05D009351 2.3e-06 57.0 91 33.0
Potri.012G119800 Populus trichocarpa HOM05D007400 ORTHO05D009351 2.3e-06 57.0 164 25.6
Gohir.D05G147100 Gossypium hirsutum HOM05D007400 ORTHO05D009351 3.0e-06 56.6 186 25.8
Phvul.007G223000 Phaseolus vulgaris HOM05D007400 ORTHO05D009351 3.0e-06 56.6 159 25.2
QL11p018093 Quercus lobata HOM05D007400 ORTHO05D009351 3.0e-06 56.6 91 31.9
Cfa019678 Carpinus fangiana HOM05D006054 ORTHO05D007951 3.9e-06 56.2 161 28.0
Os02g0168700 Oryza sativa ssp. japonica HOM05D007400 ORTHO05D009351 3.9e-06 56.2 157 26.1
THA.LOC104811504 Tarenaya hassleriana HOM05D007400 ORTHO05D009351 3.9e-06 56.2 95 32.6
Zm00001eb207360 Zea mays HOM05D007400 ORTHO05D009351 3.9e-06 56.2 95 30.5
BcaB03g11643 Brassica carinata HOM05D007400 ORTHO05D009351 5.2e-06 55.8 94 33.0
BcaC01g00636 Brassica carinata HOM05D007400 ORTHO05D009351 5.2e-06 55.8 94 33.0
A08p14510 Brassica napus HOM05D007400 ORTHO05D009351 5.2e-06 55.8 94 33.0
C03p82350 Brassica napus HOM05D007400 ORTHO05D009351 5.2e-06 55.8 94 33.0
BolC3t20518H Brassica oleracea HOM05D007400 ORTHO05D009351 5.2e-06 55.8 94 33.0
BraA08t33439Z Brassica rapa HOM05D007400 ORTHO05D009351 5.2e-06 55.8 94 33.0
CsaV3_1G046550 Cucumis sativus L. HOM05D007400 ORTHO05D009351 5.2e-06 55.8 91 31.9
Thhalv10026156m.g Eutrema salsugineum HOM05D007400 ORTHO05D009351 5.2e-06 55.8 89 33.7
AUR62011827 Chenopodium quinoa HOM05D007400 ORTHO05D009351 6.7e-06 55.5 95 31.6
Sc05g0000500 Simmondsia chinensis HOM05D007400 ORTHO05D009351 6.7e-06 55.5 91 33.0
Duzib192G0901 Durio zibethinus HOM05D007400 ORTHO05D009351 8.8e-06 55.1 94 30.9
Gohir.A05G144700 Gossypium hirsutum HOM05D007400 ORTHO05D009351 8.8e-06 55.1 91 31.9
Lalb_Chr09g0328751 Lupinus albus HOM05D007400 ORTHO05D009351 8.8e-06 55.1 158 24.1
Sp7g18330 Schrenkiella parvula HOM05D007400 ORTHO05D009351 8.8e-06 55.1 89 33.7


User provided reference genes

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