Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 2.1e-252 875.2 423 100.0
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 1.2e-247 859.4 423 98.8
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 1.3e-201 706.4 424 81.8
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 3.7e-201 704.9 425 81.9
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 4.1e-200 701.4 426 81.5
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 1.3e-198 696.4 424 80.9
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 2.1e-196 689.1 424 80.7
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 3.6e-196 688.3 424 79.7
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 8.3e-193 677.2 424 78.5
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 1.0e-190 670.2 423 78.3
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 2.5e-189 665.6 430 77.0
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 9.5e-189 663.7 434 76.0
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 3.4e-186 655.2 423 73.5
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 2.7e-183 645.6 424 72.9
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 2.8e-180 635.6 427 73.1
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 2.0e-178 629.4 425 71.8
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 2.0e-178 629.4 419 73.7
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 9.9e-178 627.1 420 72.4
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 9.9e-178 627.1 424 72.2
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 3.8e-177 625.2 422 73.2
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 1.1e-176 623.6 426 72.8
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 1.4e-176 623.2 429 72.3
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 3.2e-176 622.1 420 72.4
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 5.4e-176 621.3 424 71.9
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 1.2e-175 620.2 423 72.3
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 3.5e-175 618.6 428 71.3
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 3.5e-175 618.6 433 70.2
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 4.6e-175 618.2 428 71.3
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 2.3e-174 615.9 424 71.2
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 2.3e-174 615.9 429 71.6
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 3.0e-174 615.5 426 71.4
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 1.1e-173 613.6 436 70.9
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 7.3e-173 610.9 435 70.1
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 4.7e-172 608.2 424 69.6
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 1.1e-171 607.1 435 69.9
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 1.1e-171 607.1 422 71.6
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 3.4e-170 602.1 425 69.4
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 3.4e-170 602.1 430 69.8
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 3.2e-168 595.5 425 69.4
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 7.1e-168 594.3 421 68.6
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 3.5e-167 592.0 420 69.0
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 6.0e-167 591.3 387 75.7
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 6.0e-167 591.3 420 69.0
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 1.3e-166 590.1 420 67.4
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 1.7e-166 589.7 433 68.1
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 3.0e-166 589.0 423 67.4
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 1.5e-165 586.6 429 66.4
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 1.9e-165 586.3 423 68.1
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 1.9e-165 586.3 425 68.7
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 5.6e-165 584.7 424 66.0
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 2.8e-164 582.4 425 66.6
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 3.6e-164 582.0 425 67.1
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 4.8e-164 581.6 422 66.8
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 6.2e-164 581.3 481 63.0
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 1.8e-163 579.7 421 66.7
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 2.4e-163 579.3 425 66.4
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 4.0e-163 578.6 408 67.9
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 4.0e-163 578.6 418 66.0
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 9.0e-163 577.4 427 66.5
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 2.6e-162 575.9 424 65.3
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 3.4e-162 575.5 426 66.2
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 2.2e-161 572.8 426 66.7
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 6.4e-161 571.2 417 66.2
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 9.3e-160 567.4 459 63.4
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 2.7e-159 565.8 434 65.0
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 6.0e-159 564.7 418 65.1
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 1.0e-158 563.9 434 64.7
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 8.7e-158 560.8 451 64.1
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 1.1e-157 560.5 432 63.4
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 1.5e-157 560.1 384 71.1
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 1.5e-157 560.1 423 65.2
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 1.9e-157 559.7 423 66.0
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 1.9e-157 559.7 444 63.7
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 2.5e-157 559.3 428 64.5
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 4.3e-157 558.5 421 65.8
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 7.4e-157 557.8 421 67.0
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 9.6e-157 557.4 429 65.3
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 1.6e-156 556.6 421 66.0
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 3.7e-156 555.4 319 81.8
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 1.8e-155 553.1 421 63.4
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 7.6e-154 547.7 426 65.5
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.1e-152 543.9 434 62.9
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 1.9e-152 543.1 353 73.9
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 9.3e-152 540.8 420 64.0
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 9.3e-152 540.8 475 59.2
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 5.1e-150 535.0 448 62.5
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 5.6e-149 531.6 461 59.7
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 2.1e-148 529.6 330 76.4
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 4.8e-148 528.5 398 66.1
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 1.4e-147 526.9 390 66.4
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 6.9e-147 524.6 423 62.6
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 2.6e-146 522.7 392 66.6
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 6.7e-142 508.1 418 62.7
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 4.2e-136 488.8 337 69.1
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.0e-134 484.2 303 73.3
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 3.0e-134 482.6 300 73.7
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 6.7e-134 481.5 305 75.1
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 8.2e-132 474.6 413 60.3
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 2.6e-130 469.5 417 59.7
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 2.2e-129 466.5 421 56.3
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 5.0e-129 465.3 310 72.9
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 4.2e-128 462.2 335 66.0
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 4.7e-127 458.8 330 66.7
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 3.2e-120 436.0 422 51.7
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 2.7e-119 433.0 420 52.9
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 6.1e-119 431.8 434 50.9
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 1.3e-116 424.1 408 52.5
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.7e-116 423.7 434 52.5
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 9.1e-107 391.3 316 64.2
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 2.2e-100 370.2 316 58.2
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.0e-98 363.6 297 63.3
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 2.5e-96 356.7 280 65.4
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 1.2e-82 311.2 280 60.0
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 4.3e-80 302.8 183 71.0
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 1.6e-71 274.2 377 44.3
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 1.4e-70 271.2 455 36.7
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 4.1e-67 259.6 229 52.4
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 3.6e-63 246.5 419 37.9
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 2.7e-58 230.3 591 30.1
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 2.5e-48 197.2 249 47.8
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 2.6e-45 187.2 129 70.5
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 1.7e-44 184.5 195 50.8
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 1.0e-41 175.3 151 59.6
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 1.3e-39 168.3 121 67.8
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 1.6e-39 167.9 117 68.4
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 1.1e-27 128.6 143 49.7
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 2.1e-26 124.4 122 59.0
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 9.7e-24 115.5 255 34.1
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 1.1e-19 102.1 107 47.7
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 2.2e-15 87.8 60 66.7
CDE05G3540 Ceratophyllum demersum HOM05D005744 ORTHO05D130478 5.3e-14 83.2 117 44.4
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.5e-08 65.1 72 50.0
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 8.2e-07 59.3 49 55.1


User provided reference genes

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