Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1869.0 943 100.0
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1826.2 948 97.7
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1474.9 1003 76.3
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1459.5 1003 75.6
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1458.0 1004 75.4
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1452.2 1001 75.4
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1451.8 1000 75.3
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1428.7 1001 74.1
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1390.2 1014 72.1
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1384.8 999 71.2
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1384.4 1008 71.4
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1365.5 1004 70.5
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1359.7 1020 69.1
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1359.4 1006 70.1
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1358.6 964 73.3
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1358.6 1007 69.2
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1356.3 1004 68.9
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1354.7 1003 68.9
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1354.3 1007 68.4
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1353.2 1008 70.2
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1349.3 988 70.6
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1346.3 1031 68.0
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1346.3 1080 66.7
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1342.4 1008 69.0
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1341.6 1031 68.2
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1340.9 1024 68.5
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1339.7 1013 68.6
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1337.0 1042 67.5
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1336.6 1005 68.4
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1335.1 1008 68.7
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1330.5 1010 68.3
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1322.4 1013 67.4
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1321.2 1011 67.3
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1321.2 1011 68.0
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1321.2 1009 67.8
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1320.4 998 69.4
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1319.7 994 68.8
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1319.7 1007 67.6
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1319.3 1011 68.2
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1318.9 990 67.9
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1318.9 1000 68.4
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1318.1 1010 68.4
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1313.9 982 69.1
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1312.4 1013 67.3
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1311.2 1013 67.2
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1309.3 1010 68.3
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1302.7 918 72.8
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1300.8 1006 67.0
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1298.1 1006 66.8
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1297.0 1026 65.9
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1295.8 983 68.5
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1293.5 1011 66.8
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1293.5 993 67.6
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1293.1 1001 67.0
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1292.7 1000 67.3
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1291.9 1011 66.7
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1290.8 999 67.1
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1290.4 994 66.7
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1290.4 969 68.3
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1289.2 999 67.1
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1288.5 1016 66.0
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1287.3 999 67.0
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1287.3 996 66.9
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1285.8 1016 66.3
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1285.4 989 67.2
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1284.6 1008 66.8
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1284.2 989 66.8
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1283.5 1005 67.0
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1282.7 975 68.1
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1280.4 996 66.7
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1280.0 1009 65.8
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1279.2 1004 66.4
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1278.8 1007 66.0
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1278.8 1032 64.9
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1278.1 1002 66.3
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1278.1 1025 65.4
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1276.9 1021 65.8
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1275.0 1054 63.7
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1272.3 1024 66.5
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1268.1 961 68.9
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1251.1 1033 64.0
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1247.3 1037 64.5
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1246.5 984 64.8
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1238.4 1034 63.7
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1237.6 978 65.7
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1236.5 1012 63.4
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1228.4 925 68.4
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1211.4 1093 60.6
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1207.6 997 64.0
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1202.2 982 64.0
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1201.0 974 64.8
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1198.3 1135 57.4
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1196.8 1005 62.4
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1195.3 979 63.7
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1192.6 1013 61.2
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1185.2 1168 55.8
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1180.6 1009 63.2
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1180.6 972 63.8
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1180.2 972 63.2
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1175.2 992 61.8
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1160.6 977 62.4
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1155.6 939 64.4
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1151.0 874 67.5
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1147.9 1012 61.8
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1146.3 975 60.4
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1142.1 1014 60.1
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1140.6 975 61.2
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1129.8 1010 60.2
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1105.5 982 60.6
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1091.6 1003 56.9
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1089.3 1035 57.7
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1080.5 915 63.0
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1077.4 1004 56.3
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 6.5e-312 1074.3 998 58.4
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 2.1e-305 1052.4 856 64.6
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 4.6e-300 1034.6 877 63.5
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 1.5e-298 1029.6 908 58.5
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 1.9e-298 1029.2 954 59.5
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 2.0e-279 966.1 858 61.0
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 2.4e-277 959.1 889 57.6
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 6.7e-275 951.0 808 62.9
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 1.2e-255 887.1 1022 48.8
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 8.8e-251 870.9 1028 47.5
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 6.9e-248 861.3 861 54.4
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 7.2e-245 851.3 870 52.0
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 9.4e-237 824.3 964 48.3
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 2.2e-233 813.1 972 47.1
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 5.3e-232 808.5 769 58.6
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 6.3e-217 758.4 865 46.1
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 4.2e-213 745.7 636 64.5
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 4.7e-212 742.3 1011 44.6
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 1.5e-210 737.3 624 63.0
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 2.8e-204 716.5 624 63.1
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 5.8e-194 682.2 391 87.0
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 2.1e-191 673.7 608 59.4
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 1.2e-167 594.7 331 85.5
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 7.3e-165 585.5 471 67.9
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 6.9e-163 578.9 458 68.6
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 4.8e-156 556.2 389 73.3
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 1.8e-139 501.1 257 99.2
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.0e-138 497.7 533 51.8
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 1.9e-128 464.5 530 50.2
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 2.1e-103 381.3 283 70.3
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 1.2e-101 375.6 237 79.3
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 9.8e-101 372.5 205 83.4
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 2.5e-88 331.3 232 75.0
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 8.0e-87 326.2 815 30.1
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 1.1e-83 315.8 245 64.5
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 8.3e-76 289.7 162 84.0
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 3.1e-70 271.2 150 83.3
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 5.6e-64 250.4 298 54.4
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 7.3e-64 250.0 274 55.5
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 1.4e-62 245.7 174 69.0
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 1.6e-47 195.7 887 24.9
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 8.1e-47 193.4 181 61.3
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 1.4e-46 192.6 114 78.1
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 3.5e-42 177.9 147 62.6
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 3.5e-42 177.9 196 53.1
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 7.9e-42 176.8 90 84.4
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 4.3e-40 171.0 127 69.3
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 4.3e-32 144.4 131 60.3
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 6.3e-31 140.6 88 71.6
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 7.6e-29 133.7 77 77.9
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 3.2e-27 128.3 104 69.2
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 6.7e-25 120.6 96 61.5
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 1.5e-16 92.8 78 57.7
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 9.7e-16 90.1 53 81.1
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 6.9e-14 84.0 168 37.5
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 8.5e-12 77.0 111 43.2
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 8.5e-12 77.0 111 43.2
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 3.2e-11 75.1 46 76.1
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 4.2e-11 74.7 47 72.3
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 2.7e-10 72.0 66 53.0
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 1.0e-09 70.1 65 53.8


User provided reference genes

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