Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 3.4e-286 987.6 504 100.0
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 4.2e-268 927.5 510 94.5
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 1.3e-192 676.8 505 71.7
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 2.0e-185 652.9 502 70.5
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 3.4e-185 652.1 501 70.1
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 2.1e-182 642.9 502 69.1
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 2.3e-181 639.4 499 68.5
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 1.1e-180 637.1 520 66.7
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 8.2e-171 604.4 500 65.4
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 6.9e-170 601.3 501 66.1
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 2.2e-168 596.3 503 65.4
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 3.2e-167 592.4 507 63.5
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 6.9e-162 574.7 511 60.9
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 2.1e-158 563.1 507 60.6
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 2.7e-158 562.8 510 60.4
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 7.9e-158 561.2 517 60.7
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 3.0e-157 559.3 511 60.1
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.7e-157 558.1 504 60.7
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 2.6e-156 556.2 510 60.2
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 5.7e-156 555.1 506 59.7
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 3.7e-155 552.4 510 59.4
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 8.2e-155 551.2 504 59.9
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 4.1e-154 548.9 508 58.1
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 2.6e-153 546.2 517 56.3
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 3.4e-153 545.8 507 58.2
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 7.7e-153 544.7 510 58.0
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 1.0e-152 544.3 508 59.4
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 1.7e-152 543.5 503 56.9
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 2.2e-152 543.1 505 58.2
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 2.2e-152 543.1 504 58.7
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 3.8e-152 542.3 508 59.6
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 5.0e-152 542.0 498 59.6
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 2.5e-151 539.7 503 56.9
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 5.5e-151 538.5 508 57.3
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 7.2e-151 538.1 510 58.0
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 2.7e-150 536.2 510 58.4
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 4.7e-150 535.4 514 56.2
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 7.9e-150 534.6 504 57.3
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 2.3e-149 533.1 504 57.9
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 2.3e-149 533.1 538 55.6
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 6.7e-149 531.6 516 56.6
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 9.7e-148 527.7 514 55.8
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 1.3e-147 527.3 503 57.1
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.2e-147 526.6 503 57.3
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 4.8e-147 525.4 506 58.1
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 2.4e-146 523.1 502 56.4
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 3.1e-146 522.7 514 55.4
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 4.1e-146 522.3 513 58.3
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 7.0e-146 521.5 509 55.8
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 1.2e-145 520.8 506 56.5
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 2.6e-145 519.6 505 56.4
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 2.6e-145 519.6 510 56.3
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 3.5e-145 519.2 510 56.3
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 4.5e-145 518.8 504 57.3
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 2.9e-144 516.2 509 56.4
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 2.9e-144 516.2 509 56.4
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 1.1e-143 514.2 518 55.6
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 5.5e-143 511.9 506 56.3
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 7.2e-143 511.5 510 55.7
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 1.2e-142 510.8 503 54.9
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 1.2e-142 510.8 503 54.9
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 6.1e-142 508.4 508 54.5
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.8e-141 506.9 502 56.4
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 1.8e-141 506.9 517 54.5
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 3.0e-141 506.1 504 56.3
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 6.7e-141 505.0 503 54.7
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 8.8e-141 504.6 504 56.3
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 1.5e-140 503.8 502 55.6
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 1.3e-139 500.7 493 56.8
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 6.3e-139 498.4 445 62.0
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 1.1e-138 497.7 503 54.1
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 2.4e-138 496.5 503 56.7
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 5.3e-138 495.4 472 56.6
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 9.1e-138 494.6 522 55.0
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 1.0e-136 491.1 565 50.8
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 2.9e-136 489.6 515 53.6
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 1.2e-132 477.6 457 58.2
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 6.3e-131 471.9 514 52.9
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 8.3e-131 471.5 453 58.5
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 3.5e-129 466.1 455 55.8
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 5.0e-128 462.2 502 52.2
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 2.1e-126 456.8 451 55.9
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 4.7e-126 455.7 492 52.6
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 6.1e-126 455.3 471 53.9
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 2.6e-124 449.9 445 56.9
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 3.7e-123 446.0 399 62.7
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 1.2e-121 441.0 457 55.6
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.6e-121 440.7 501 50.3
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 1.7e-120 437.2 503 51.3
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 2.3e-120 436.8 404 60.9
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.1e-118 430.3 467 53.7
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 2.6e-116 423.3 502 49.8
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 7.0e-114 415.2 498 50.8
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 2.0e-113 413.7 395 58.2
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 4.3e-111 406.0 375 56.5
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.6e-110 402.9 497 49.7
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 6.2e-110 402.1 504 47.0
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 2.3e-109 400.2 465 50.8
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 3.0e-104 383.3 367 57.2
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 8.9e-101 371.7 510 44.3
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 2.0e-100 370.5 353 56.1
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 3.7e-99 366.3 357 56.9
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 1.3e-96 357.8 395 51.4
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 1.6e-94 350.9 352 56.2
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 4.7e-94 349.4 491 46.6
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 8.9e-93 345.1 493 44.8
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 1.9e-90 337.4 345 52.8
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 2.1e-89 334.0 499 42.3
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 6.6e-88 328.9 403 50.4
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 6.9e-85 318.9 597 38.5
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 2.6e-84 317.0 344 52.9
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.4e-84 316.6 376 51.6
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 3.3e-79 300.1 245 65.7
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 3.3e-79 300.1 358 51.7
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 5.6e-79 299.3 378 47.4
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 9.6e-79 298.5 301 53.8
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 3.6e-78 296.6 267 58.8
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 1.4e-77 294.7 306 53.9
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.5e-76 291.2 279 59.1
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 1.4e-74 284.6 345 49.0
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 3.5e-73 280.0 241 59.8
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 4.8e-70 269.6 248 58.1
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 5.8e-68 262.7 240 58.8
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 1.3e-67 261.5 375 44.0
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 1.8e-64 251.1 222 59.9
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.2e-54 217.6 224 55.8
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 6.9e-53 212.6 199 57.8
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.5e-52 211.5 169 63.9
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 4.5e-52 209.9 370 37.3
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 9.3e-50 202.2 200 53.5
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 7.9e-49 199.1 271 47.6
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.4e-48 198.4 192 58.3
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 1.1e-47 195.3 420 35.2
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 1.9e-47 194.5 177 57.1
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 4.8e-46 189.9 202 55.9
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 5.0e-43 179.9 506 31.8
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 2.1e-41 174.5 162 58.6
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 2.0e-36 157.9 209 45.9
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 5.9e-36 156.4 134 63.4
SEGI_23095 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 5.0e-35 153.3 155 54.8
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.4e-32 145.2 181 48.1
Glyma.20G020033 Glycine max HOM05D004308 ORTHO05D005139 9.7e-31 139.0 103 71.8
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 2.9e-27 127.5 104 65.4
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 8.5e-27 125.9 134 50.0
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.5e-26 125.2 116 53.4
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 2.5e-26 124.4 116 54.3
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 5.5e-26 123.2 524 26.9
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 1.5e-23 115.2 488 27.7
Nitab4.5_0000032g0180 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.8e-22 110.9 123 54.5
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.1e-18 99.0 79 64.6
Lju1680A2G13 Lonicera japonica HOM05D004308 ORTHO05D005139 8.8e-16 89.4 64 73.4
Lju357C1T0 Lonicera japonica HOM05D004308 ORTHO05D005139 9.8e-15 85.9 80 58.8
Lju963C4T0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.3e-14 85.5 88 48.9
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 4.8e-14 83.6 61 60.7
Lsat_1_v5_gn_9_99701 Lactuca sativa HOM05D004308 ORTHO05D005139 1.4e-13 82.0 185 36.8
CBR_g46841 Chara braunii HOM05D004308 ORTHO05D005139 4.1e-13 80.5 87 46.0
Atru.chr10.196 Acer truncatum HOM05D004308 ORTHO05D005139 1.3e-11 75.5 73 56.2
CiPaw.13G174100 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.3e-11 75.5 82 50.0
Lju366C0T2 Lonicera japonica HOM05D004308 ORTHO05D005139 4.2e-10 70.5 82 45.1
Lju2253C0T0 Lonicera japonica HOM05D004308 ORTHO05D005139 9.5e-10 69.3 78 44.9
AUR62037285 Chenopodium quinoa HOM05D004308 ORTHO05D005139 4.7e-09 67.0 40 75.0
Atru.chr10.219 Acer truncatum HOM05D004308 ORTHO05D005139 2.6e-07 61.2 126 34.1


User provided reference genes

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