Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.9e-156 555.8 287 100.0
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.9e-149 531.9 290 96.2
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.6e-145 518.8 287 94.8
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 6.3e-144 514.2 287 94.4
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 7.3e-92 341.3 265 70.6
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 2.8e-91 339.3 275 69.1
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 3.6e-91 339.0 284 69.0
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 1.1e-90 337.4 273 69.2
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 9.0e-90 334.3 289 67.8
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 3.4e-89 332.4 270 69.3
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 4.5e-89 332.0 279 68.5
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 5.8e-89 331.6 281 65.8
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 1.7e-88 330.1 286 67.1
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 2.9e-88 329.3 249 73.5
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 1.4e-87 327.0 249 71.9
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 2.4e-87 326.2 282 65.6
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 3.2e-87 325.9 254 68.5
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 3.2e-87 325.9 280 68.9
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 5.4e-87 325.1 236 74.2
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 3.5e-86 322.4 288 66.0
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 1.3e-85 320.5 269 66.5
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 3.9e-85 318.9 283 64.3
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 3.9e-85 318.9 282 64.2
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 3.9e-85 318.9 263 67.7
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 3.9e-85 318.9 259 66.8
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 3.9e-85 318.9 259 66.8
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 1.5e-84 317.0 277 65.0
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 1.9e-84 316.6 281 65.1
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 2.5e-84 316.2 203 79.3
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 3.3e-84 315.8 268 66.8
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 5.6e-84 315.1 251 69.3
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 7.4e-84 314.7 278 65.1
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 9.6e-84 314.3 245 71.4
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 9.6e-84 314.3 281 65.5
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 1.3e-83 313.9 285 65.3
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 1.6e-83 313.5 275 65.1
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 8.1e-83 311.2 236 70.8
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 2.4e-82 309.7 199 79.4
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 3.1e-82 309.3 199 77.4
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 5.3e-82 308.5 276 63.8
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 5.3e-82 308.5 254 66.1
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 6.9e-82 308.1 235 70.6
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 6.9e-82 308.1 237 69.2
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 1.2e-81 307.4 278 63.3
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.5e-81 307.0 280 63.9
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 1.5e-81 307.0 237 69.6
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.0e-81 306.6 279 64.2
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 2.6e-81 306.2 198 77.3
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 2.6e-81 306.2 198 77.3
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 2.6e-81 306.2 266 63.9
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 4.5e-81 305.4 279 65.2
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 4.5e-81 305.4 279 64.2
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 4.5e-81 305.4 262 64.9
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 5.8e-81 305.1 284 62.0
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 7.6e-81 304.7 237 70.9
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 9.9e-81 304.3 236 69.1
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 1.3e-80 303.9 224 71.4
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 1.3e-80 303.9 238 69.3
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.7e-80 303.5 228 71.1
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 2.9e-80 302.8 199 76.4
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 2.9e-80 302.8 271 64.2
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 2.9e-80 302.8 231 71.4
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 3.8e-80 302.4 206 76.7
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 4.9e-80 302.0 268 63.8
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 8.4e-80 301.2 238 68.9
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 8.4e-80 301.2 238 68.1
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 8.4e-80 301.2 274 62.4
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 1.4e-79 300.4 267 64.0
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 3.2e-79 299.3 249 66.7
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 3.2e-79 299.3 271 62.7
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 4.6e-78 295.4 202 77.7
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 6.0e-78 295.0 273 59.7
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 6.0e-78 295.0 291 60.8
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 7.9e-78 294.7 286 61.2
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 7.9e-78 294.7 202 77.7
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 7.9e-78 294.7 250 63.6
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 3.9e-77 292.4 189 77.8
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 3.9e-77 292.4 253 64.8
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 5.1e-77 292.0 252 64.7
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 1.1e-76 290.8 230 68.7
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 1.5e-76 290.4 236 64.4
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 1.5e-76 290.4 253 65.2
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 3.3e-76 289.3 268 62.7
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 4.3e-76 288.9 201 74.6
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 5.6e-76 288.5 235 67.2
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 7.4e-76 288.1 201 71.1
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 1.3e-75 287.3 218 70.6
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.6e-75 287.0 268 62.3
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 2.8e-75 286.2 282 59.2
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 3.7e-75 285.8 210 71.4
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 4.8e-75 285.4 209 72.2
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 4.8e-75 285.4 230 67.0
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 8.2e-75 284.6 218 69.7
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 1.1e-74 284.3 278 57.2
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 1.1e-74 284.3 242 66.5
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 6.9e-74 281.6 202 73.8
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 9.0e-74 281.2 201 68.2
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.5e-73 280.4 226 67.3
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 2.0e-73 280.0 202 73.3
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 2.6e-73 279.6 258 60.9
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 1.0e-72 277.7 199 69.8
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 1.7e-72 276.9 199 69.3
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 2.2e-72 276.6 202 72.3
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 2.9e-72 276.2 201 68.2
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 4.9e-72 275.4 202 71.8
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 4.9e-72 275.4 202 71.8
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 8.4e-72 274.6 256 59.0
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 1.9e-71 273.5 223 67.3
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 1.2e-70 270.8 238 65.1
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 2.1e-70 270.0 269 58.7
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 1.8e-69 266.9 201 70.1
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 3.9e-69 265.8 192 72.9
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 5.1e-69 265.4 190 73.2
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.1e-68 264.2 218 66.1
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 2.2e-67 260.0 181 76.2
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 1.1e-66 257.7 199 66.8
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 2.6e-65 253.1 248 56.0
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 4.5e-65 252.3 184 73.9
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 1.0e-64 251.1 177 72.3
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 1.3e-64 250.8 178 73.0
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 3.8e-64 249.2 268 55.6
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 6.5e-64 248.4 245 55.5
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 8.5e-64 248.1 177 73.4
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 3.6e-62 242.7 252 52.8
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 1.5e-60 237.3 192 67.2
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 9.7e-60 234.6 256 54.7
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 1.4e-58 230.7 168 70.8
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 9.4e-55 218.0 273 50.9
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 2.6e-52 209.9 165 66.1
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 2.6e-52 209.9 165 66.1
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 1.5e-49 200.7 189 59.8
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 4.5e-49 199.1 135 76.3
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 1.7e-48 197.2 175 64.0
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 2.5e-47 193.4 287 48.4
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 2.5e-47 193.4 211 48.8
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 2.1e-46 190.3 182 53.8
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 2.2e-40 170.2 115 75.7
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 7.0e-34 148.7 108 71.3
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.2e-32 143.7 88 81.8
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 7.2e-31 138.7 194 46.4
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 1.8e-29 134.0 84 79.8
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 2.8e-27 126.7 179 46.9
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 2.8e-27 126.7 143 55.2
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 1.4e-26 124.4 218 39.0
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 2.0e-25 120.6 209 37.8
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 3.8e-24 116.3 205 35.6
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 2.1e-22 110.5 203 33.5
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 3.0e-21 106.7 139 51.8
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 9.8e-20 101.7 95 61.1
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 4.9e-19 99.4 70 68.6
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 5.0e-16 89.4 199 33.2
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 5.6e-15 85.9 111 50.5
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 9.5e-15 85.1 69 65.2
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 2.0e-09 67.4 65 58.5
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 1.1e-07 61.6 37 78.4
C09p34920 Brassica napus HOM05D001108 ORTHO05D005418 8.0e-06 55.5 53 56.6
BolC9t56339H Brassica oleracea HOM05D001108 ORTHO05D005418 8.0e-06 55.5 53 56.6


User provided reference genes

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