Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 7.8e-260 900.2 545 100.0
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 5.6e-258 894.0 545 99.4
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 4.2e-213 745.0 523 84.1
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 5.7e-210 734.6 530 83.0
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 3.2e-197 692.2 529 81.1
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 2.3e-195 686.0 523 81.1
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 8.5e-190 667.5 522 76.4
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 2.5e-189 666.0 519 78.6
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 9.4e-189 664.1 544 74.6
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 4.2e-181 638.6 548 72.4
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 1.2e-180 637.1 543 73.8
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 1.7e-177 626.7 545 71.9
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 1.1e-176 624.0 549 71.8
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 1.2e-175 620.5 526 74.0
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 2.0e-175 619.8 562 70.5
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 2.2e-174 616.3 482 80.5
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 4.2e-173 612.1 532 68.8
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 5.5e-173 611.7 523 71.9
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 1.6e-172 610.1 541 69.3
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 2.3e-171 606.3 526 70.3
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 3.0e-171 605.9 546 67.6
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 5.7e-170 601.7 544 70.2
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 7.5e-170 601.3 547 70.6
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 9.8e-170 600.9 509 69.7
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 2.8e-169 599.4 424 84.7
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 3.1e-168 595.9 538 70.8
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 1.2e-167 594.0 556 68.2
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 4.5e-167 592.0 520 72.1
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 1.1e-165 587.4 524 71.6
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 1.8e-163 580.1 544 68.2
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 9.8e-162 574.3 551 67.2
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 2.2e-161 573.2 546 65.6
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 2.8e-161 572.8 531 66.7
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 3.1e-160 569.3 541 67.5
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 9.2e-160 567.8 557 62.8
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 1.6e-159 567.0 542 67.9
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 2.0e-159 566.6 637 57.1
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 1.5e-157 560.5 542 65.7
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 7.3e-157 558.1 525 67.0
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 2.8e-156 556.2 490 73.5
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 6.1e-156 555.1 502 67.7
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 8.0e-156 554.7 522 70.7
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 1.2e-154 550.8 546 67.0
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 1.1e-149 534.3 543 65.9
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 1.5e-149 533.9 527 67.6
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 2.5e-149 533.1 541 65.8
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 3.6e-148 529.3 543 64.1
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 1.1e-147 527.7 429 79.0
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 4.0e-147 525.8 525 65.3
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 6.8e-147 525.0 538 63.9
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 8.9e-147 524.6 561 63.6
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 1.5e-146 523.9 493 65.5
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 1.3e-145 520.8 484 69.0
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 2.2e-145 520.0 555 59.8
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 8.3e-145 518.1 498 64.1
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 2.1e-143 513.5 546 62.6
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 1.7e-142 510.4 558 61.5
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 9.5e-141 504.6 522 64.4
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 9.5e-141 504.6 565 59.5
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 3.6e-140 502.7 539 60.7
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 6.8e-139 498.4 529 64.1
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 2.0e-138 496.9 572 56.5
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 2.6e-138 496.5 442 72.2
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 4.4e-138 495.7 494 67.0
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 2.4e-136 490.0 537 61.8
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 7.1e-136 488.4 480 65.4
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 4.6e-135 485.7 502 62.7
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 5.1e-134 482.3 565 59.6
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 2.1e-132 476.9 553 56.8
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 3.6e-132 476.1 517 57.3
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 4.0e-131 472.6 515 57.1
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 1.5e-130 470.7 530 59.2
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 5.8e-130 468.8 477 63.9
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 7.6e-130 468.4 538 59.1
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 1.2e-127 461.1 459 63.4
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 2.1e-127 460.3 556 57.7
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 1.0e-126 458.0 539 56.8
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 1.5e-125 454.1 535 59.3
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 1.5e-125 454.1 570 56.3
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 3.3e-125 453.0 523 60.6
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 9.6e-125 451.4 555 53.5
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 2.4e-123 446.8 523 53.5
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 9.0e-123 444.9 522 54.2
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 3.4e-122 443.0 519 54.3
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 4.4e-122 442.6 544 53.3
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 5.4e-120 435.6 521 52.6
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 3.3e-117 426.4 433 64.4
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 4.3e-117 426.0 537 56.4
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 7.3e-117 425.2 533 55.2
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 1.3e-116 424.5 534 56.2
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 3.6e-116 422.9 550 50.5
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 6.2e-116 422.2 533 55.0
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 6.2e-116 422.2 533 55.0
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 1.4e-115 421.0 526 57.8
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 4.0e-115 419.5 491 59.1
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 2.9e-113 413.3 548 49.1
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 2.1e-111 407.1 477 55.1
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 2.1e-111 407.1 302 75.5
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 1.3e-108 397.9 404 61.9
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 4.6e-103 379.4 301 70.8
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 1.9e-101 374.0 301 69.4
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 4.3e-85 319.7 189 87.3
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 2.4e-83 313.9 189 83.1
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 5.5e-80 302.8 189 84.1
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 1.2e-79 301.6 479 50.7
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 8.2e-76 288.9 355 62.8
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 1.8e-75 287.7 228 66.2
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 4.4e-69 266.5 214 64.0
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 9.7e-69 265.4 232 62.1
BcaC06g31203 Brassica carinata HOM05D004479 ORTHO05D005597 1.8e-67 261.2 230 62.6
BraA06t27217Z Brassica rapa HOM05D004479 ORTHO05D005597 3.5e-66 256.9 236 60.6
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 6.5e-65 252.7 167 80.2
Pp3c18_4030 Physcomitrium patens HOM05D004479 ORTHO05D005597 1.5e-61 241.5 299 49.2
A06p43310 Brassica napus HOM05D004479 ORTHO05D005597 6.3e-60 236.1 265 53.2
Oeu062492.1 Olea europaea HOM05D004479 ORTHO05D005597 2.7e-50 204.1 214 53.3
C07p33640 Brassica napus HOM05D004479 ORTHO05D005597 5.9e-50 203.0 232 53.4
Aqoxy377s002 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 2.3e-46 191.0 171 66.7
Mapoly0029s0023 Marchantia polymorpha HOM05D004479 ORTHO05D005597 2.8e-44 184.1 576 35.9
Psat0s1762g0040 Pisum sativum HOM05D004479 ORTHO05D005597 1.4e-43 181.8 186 58.1
SMO114G0145 Selaginella moellendorffii HOM05D004479 ORTHO05D005597 4.5e-42 176.8 204 47.5
CiPaw.01G090700 Carya illinoinensis HOM05D004479 ORTHO05D005597 5.9e-42 176.4 147 71.4
Psat0s1227g0080 Pisum sativum HOM05D000020 ORTHO05D015801 1.3e-41 175.3 139 70.5
AagrBONN_evm.TU.Sc2ySwM_117.2251 Anthoceros agrestis HOM05D004479 ORTHO05D005597 1.7e-41 174.9 212 46.2
AagrBONN_evm.TU.Sc2ySwM_117.1357 Anthoceros agrestis HOM05D004479 ORTHO05D005597 1.8e-38 164.9 214 44.4
CBR_g41305 Chara braunii HOM05D004479 ORTHO05D005597 7.5e-37 159.5 275 40.7
CARHR145470 Cardamine hirsuta HOM05D004479 ORTHO05D005597 1.2e-34 152.1 106 75.5
COL.COLO4_31578 Corchorus olitorius HOM05D001810 ORTHO05D005662 1.6e-34 151.8 182 54.9
SEGI_11469 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 1.4e-30 138.7 152 51.3
Cpa.g.sc155.18 Carica papaya HOM05D004479 ORTHO05D005597 2.5e-24 117.9 102 67.6
Actinidia21652 Actinidia chinensis HOM05D004479 ORTHO05D005597 4.0e-22 110.5 66 77.3
QL03p033126 Quercus lobata HOM05D004479 ORTHO05D005597 2.0e-21 108.2 69 79.7
Psat7g008520 Pisum sativum HOM05D004479 ORTHO05D005597 1.3e-20 105.5 85 69.4
SEGI_18721 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 6.4e-20 103.2 91 58.2
Psat0s2660g0040 Pisum sativum HOM05D000020 ORTHO05D015801 3.2e-19 100.9 80 68.8
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 2.1e-18 98.2 133 46.6
FAN12G4029 Fragaria x ananassa HOM05D002474 ORTHO05D007142 3.0e-17 94.4 119 54.6
SHI24407 Sapria himalayana HOM05D004479 ORTHO05D005597 1.1e-16 92.4 177 43.5
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 1.1e-16 92.4 152 41.4
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 7.3e-16 89.7 69 66.7
DCAR_030620 Daucus carota HOM05D004479 ORTHO05D005597 3.1e-14 84.3 98 54.1
SHI31116 Sapria himalayana HOM05D004479 ORTHO05D005597 6.8e-14 83.2 46 84.8
QL05p046913 Quercus lobata HOM05D004479 ORTHO05D005597 8.9e-14 82.8 109 52.3
SHI42976 Sapria himalayana HOM05D004479 ORTHO05D005597 5.4e-11 73.6 115 41.7
SHI50578 Sapria himalayana HOM05D004479 ORTHO05D005597 9.3e-11 72.8 249 31.7
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 1.2e-10 72.4 39 87.2
C09p24010 Brassica napus HOM05D002960 ORTHO05D042139 1.2e-10 72.4 39 87.2
BolC9t55321H Brassica oleracea HOM05D002960 ORTHO05D042139 1.2e-10 72.4 39 87.2
Psat3g175600 Pisum sativum HOM05D004479 ORTHO05D005597 4.6e-10 70.5 69 60.9
SHI31115 Sapria himalayana HOM05D004479 ORTHO05D005597 4.6e-10 70.5 44 77.3
Haze_18674 Corylus avellana HOM05D004479 ORTHO05D005597 6.0e-10 70.1 40 85.0
Psat0s1227g0040 Pisum sativum HOM05D000280 ORTHO05D015801 3.0e-09 67.8 52 69.2
SHI49595 Sapria himalayana HOM05D004479 ORTHO05D005597 3.9e-09 67.4 113 41.6
Haze_16261 Corylus avellana HOM05D004479 ORTHO05D029161 5.1e-09 67.0 67 59.7
COL.COLO4_27264 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.9e-08 65.1 63 52.4
SHI36675 Sapria himalayana HOM05D004479 ORTHO05D005597 3.3e-08 64.3 54 63.0
Peaxi162Scf00038g02640 Petunia axillaris HOM05D004479 ORTHO05D029161 4.3e-08 63.9 42 73.8
SHI13126 Sapria himalayana HOM05D000105 ORTHO05D000023 5.6e-08 63.5 42 76.2
COL.COLO4_18371 Corchorus olitorius HOM05D004479 ORTHO05D005597 7.3e-08 63.2 63 57.1
Hma1.2p1_0370F.1_g138010 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 1.3e-07 62.4 46 71.7
BcaC02g11491 Brassica carinata HOM05D019637 ORTHO05D018695 1.6e-07 62.0 40 82.5
C04p14790 Brassica napus HOM05D004479 ORTHO05D018695 1.6e-07 62.0 40 82.5
BolC4t23053H Brassica oleracea HOM05D004479 ORTHO05D018695 1.6e-07 62.0 40 82.5
SHI34972 Sapria himalayana HOM05D004479 ORTHO05D005597 2.1e-07 61.6 255 27.8
QL08p038027 Quercus lobata HOM05D004479 ORTHO05D337893 2.8e-07 61.2 201 33.3
Nitab4.5_0005739g0060 Nicotiana tabacum HOM05D004479 ORTHO05D029161 3.1e-06 57.8 100 44.0


User provided reference genes

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