Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 9.1e-145 516.9 267 100.0
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 8.0e-117 424.1 235 94.0
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 3.4e-115 418.7 235 92.8
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 2.6e-75 286.2 238 66.8
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 2.4e-73 279.6 263 60.8
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 1.0e-71 274.2 238 65.1
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 1.8e-63 246.9 142 89.4
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 2.3e-63 246.5 228 61.4
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 2.4e-60 236.5 241 60.2
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 7.6e-59 231.5 237 56.1
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 8.4e-58 228.0 237 56.5
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 7.1e-57 224.9 238 57.6
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 1.0e-55 221.1 236 55.1
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 5.1e-55 218.8 238 56.7
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 2.5e-54 216.5 236 54.7
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 2.8e-53 213.0 231 55.4
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 9.0e-52 208.0 232 53.9
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 1.7e-50 203.8 233 56.2
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 5.5e-49 198.7 238 51.3
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 7.2e-49 198.4 237 51.5
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 3.5e-48 196.1 231 51.1
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 1.5e-46 190.7 231 54.1
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 5.7e-46 188.7 235 51.5
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 5.7e-46 188.7 235 51.5
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 2.8e-45 186.4 235 48.1
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 4.8e-45 185.7 258 46.1
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 6.3e-45 185.3 256 46.1
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 2.4e-44 183.3 233 50.2
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 4.1e-44 182.6 237 49.4
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 4.1e-44 182.6 244 47.5
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 6.9e-44 181.8 233 52.4
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 6.9e-44 181.8 235 50.2
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 9.0e-44 181.4 230 49.6
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 1.5e-43 180.6 230 48.7
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 5.9e-43 178.7 263 47.5
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 1.7e-42 177.2 227 49.8
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 2.2e-42 176.8 267 46.4
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 5.0e-42 175.6 269 43.5
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 8.5e-42 174.9 258 48.1
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 1.1e-41 174.5 234 46.6
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 1.9e-41 173.7 234 46.2
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 2.5e-41 173.3 229 46.7
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 2.5e-41 173.3 233 47.2
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 3.2e-41 172.9 228 51.3
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 4.2e-41 172.6 231 46.8
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 6.1e-40 168.7 228 50.4
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 6.1e-40 168.7 215 49.3
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 6.1e-40 168.7 258 46.1
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 1.0e-39 167.9 245 45.3
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 8.8e-39 164.9 231 44.6
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 1.1e-38 164.5 266 42.5
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 1.5e-38 164.1 232 47.8
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.0e-38 163.7 233 45.9
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 9.7e-38 161.4 214 49.5
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.7e-37 160.6 233 45.9
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 2.8e-37 159.8 258 44.6
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 2.8e-37 159.8 226 45.6
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 8.2e-37 158.3 265 43.4
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 1.8e-36 157.1 225 46.7
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 2.4e-36 156.8 224 48.2
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 3.1e-36 156.4 233 43.8
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 2.6e-35 153.3 231 44.6
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 5.9e-35 152.1 231 44.2
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 7.7e-35 151.8 170 52.4
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.2e-34 150.2 221 46.2
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 2.9e-34 149.8 244 43.0
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 2.9e-34 149.8 244 43.0
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 6.5e-34 148.7 232 44.0
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.4e-33 147.5 232 44.0
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 1.2e-32 144.4 223 41.3
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 3.6e-32 142.9 232 41.8
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 3.6e-32 142.9 254 40.2
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 1.0e-31 141.4 256 41.4
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.4e-31 141.0 239 40.6
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 1.5e-30 137.5 270 38.1
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 2.2e-29 133.7 243 42.0
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 4.1e-28 129.4 260 38.5
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 4.1e-28 129.4 247 36.0
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 2.0e-27 127.1 225 38.2
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 2.6e-27 126.7 243 37.4
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 5.9e-27 125.6 226 38.5
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 7.7e-27 125.2 216 42.6
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 7.7e-27 125.2 233 39.1
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 1.1e-25 121.3 231 40.3
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 1.1e-25 121.3 227 42.3
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 1.2e-24 117.9 231 35.5
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 1.6e-24 117.5 238 35.3
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 1.4e-23 114.4 183 47.5
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 2.3e-23 113.6 256 34.4
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 8.8e-23 111.7 195 37.4
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 1.1e-22 111.3 195 37.4
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 2.0e-22 110.5 256 35.5
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 4.1e-20 102.8 229 37.1
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 1.1e-17 94.7 227 37.0
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 9.4e-17 91.7 209 36.4
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 1.6e-16 90.9 180 37.8
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 2.1e-16 90.5 124 44.4
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 6.1e-16 89.0 253 32.8
Lalb_Chr12g0205771 Lupinus albus HOM05D005839 ORTHO05D005686 6.1e-16 89.0 63 65.1
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 5.2e-15 85.9 129 38.0
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 5.2e-15 85.9 225 34.7
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 2.0e-14 84.0 129 38.8
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 4.4e-14 82.8 151 39.1
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 5.7e-14 82.4 130 37.7
arahy.Tifrunner.gnm1.ann1.BWA67Y Arachis hypogaea HOM05D001957 ORTHO05D005931 1.3e-13 81.3 60 68.3
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 2.2e-13 80.5 127 38.6
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 8.3e-13 78.6 124 40.3
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 1.4e-12 77.8 150 38.0
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 9.1e-12 75.1 271 32.1
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 1.2e-11 74.7 132 37.1
Glyma.11G253800 Glycine max HOM05D005839 ORTHO05D005686 2.0e-11 73.9 144 39.6
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 1.1e-09 68.2 132 34.8
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 1.1e-09 68.2 132 34.8
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 1.5e-09 67.8 132 34.1
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 1.5e-09 67.8 132 34.1
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 1.5e-09 67.8 124 36.3
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 7.2e-09 65.5 122 38.5
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 1.2e-08 64.7 118 38.1
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 1.2e-08 64.7 134 35.1
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 1.2e-08 64.7 129 34.1
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 6.1e-08 62.4 133 34.6
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 6.1e-08 62.4 256 28.1
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 5.2e-07 59.3 133 33.8
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 5.2e-07 59.3 261 29.1
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.8e-07 58.9 231 29.0
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 6.8e-07 58.9 261 27.6


User provided reference genes

Program Settings