Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SCY2K5 Arachis hypogaea HOM05D006291 ORTHO05D007669 4.0e-108 394.8 205 100.0
arahy.Tifrunner.gnm1.ann1.8H1PJC Arachis hypogaea HOM05D006291 ORTHO05D007669 2.2e-58 229.6 128 97.7
VMungo1127G1563 Vigna mungo HOM05D006291 ORTHO05D007669 6.3e-53 211.5 128 87.5
Phvul.011G206700 Phaseolus vulgaris HOM05D006291 ORTHO05D007669 4.1e-52 208.8 128 85.9
Glyma.15G235500 Glycine max HOM05D006291 ORTHO05D007669 1.2e-51 207.2 128 85.9
Lj3g0009914 Lotus japonicus HOM05D006291 ORTHO05D007669 2.6e-51 206.1 128 84.4
Glyma.13G197100 Glycine max HOM05D006291 ORTHO05D007669 5.9e-51 204.9 128 85.2
Lalb_Chr01g0007741 Lupinus albus HOM05D006291 ORTHO05D007669 7.7e-51 204.5 128 84.4
Ca_23954_v3 Cicer arietinum L. HOM05D006291 ORTHO05D007669 1.3e-50 203.8 128 84.4
TPR.G27823 Trifolium pratense HOM05D006291 ORTHO05D007669 3.8e-50 202.2 128 83.6
Psat0s418g0040 Pisum sativum HOM05D006291 ORTHO05D007669 1.2e-48 197.2 128 81.2
GSVIVG01032270001 Vitis vinifera HOM05D006291 ORTHO05D007669 1.6e-48 196.8 128 81.2
Duzib128G2031 Durio zibethinus HOM05D006291 ORTHO05D007669 4.6e-48 195.3 128 82.0
Gorai.009G302200 Gossypium raimondii HOM05D006291 ORTHO05D007669 4.6e-48 195.3 130 80.0
CAN.G54.10 Capsicum annuum HOM05D006291 ORTHO05D007669 1.0e-47 194.1 128 79.7
Ca_23960_v3 Cicer arietinum L. HOM05D006291 ORTHO05D007669 1.4e-47 193.7 120 85.8
Duzib128G1629 Durio zibethinus HOM05D006291 ORTHO05D007669 1.4e-47 193.7 128 81.2
Gohir.D05G287200 Gossypium hirsutum HOM05D006291 ORTHO05D007669 1.4e-47 193.7 128 80.5
Manes.02G198400 Manihot esculenta HOM05D006291 ORTHO05D007669 1.8e-47 193.4 128 78.9
Sc23g0004310 Simmondsia chinensis HOM05D006291 ORTHO05D007669 2.3e-47 193.0 128 79.7
PGSC0003DMG400013569 Solanum tuberosum HOM05D006291 ORTHO05D007669 3.0e-47 192.6 128 79.7
Actinidia38532 Actinidia chinensis HOM05D006291 ORTHO05D007669 6.7e-47 191.4 128 80.5
SGA_v2.0_scaffold21G09601 Striga asiatica HOM05D006291 ORTHO05D007669 8.8e-47 191.0 128 79.7
COL.COLO4_05650 Corchorus olitorius HOM05D006291 ORTHO05D007669 1.5e-46 190.3 128 79.7
Nn8g40626 Nelumbo nucifera HOM05D006291 ORTHO05D007669 1.5e-46 190.3 128 79.7
Solyc07g042620.4 Solanum lycopersicum HOM05D006291 ORTHO05D007669 1.5e-46 190.3 126 80.2
Sopen07g022310 Solanum pennellii HOM05D006291 ORTHO05D007669 1.5e-46 190.3 126 80.2
TAR362G0416 Trochodendron aralioides HOM05D006291 ORTHO05D007669 1.5e-46 190.3 131 77.9
MSTRG.10473 Avicennia marina HOM05D006291 ORTHO05D007669 2.0e-46 189.9 128 79.7
AUR62020734 Chenopodium quinoa HOM05D006291 ORTHO05D007669 2.0e-46 189.9 128 77.3
AUR62027977 Chenopodium quinoa HOM05D006291 ORTHO05D007669 2.0e-46 189.9 128 77.3
Cc06_g23850 Coffea canephora HOM05D006291 ORTHO05D007669 2.6e-46 189.5 128 80.5
Nitab4.5_0003139g0110 Nicotiana tabacum HOM05D006291 ORTHO05D007669 3.3e-46 189.1 129 76.7
THA.LOC104826574 Tarenaya hassleriana HOM05D006291 ORTHO05D007669 3.3e-46 189.1 128 78.9
Ah.10g032820 Amaranthus hybridus HOM05D006291 ORTHO05D007669 7.4e-46 188.0 128 76.6
EL10Ac2g03616 Beta vulgaris HOM05D006291 ORTHO05D007669 7.4e-46 188.0 128 75.8
ECA234G1508 Erigeron canadensis HOM05D006291 ORTHO05D007669 7.4e-46 188.0 128 78.1
Potri.006G079700 Populus trichocarpa HOM05D006291 ORTHO05D007669 7.4e-46 188.0 128 77.3
Actinidia02463 Actinidia chinensis HOM05D006291 ORTHO05D007669 1.3e-45 187.2 128 78.1
Gohir.A05G286200 Gossypium hirsutum HOM05D006291 ORTHO05D007669 1.3e-45 187.2 122 81.1
HanXRQChr12g0358571 Helianthus annuus HOM05D006291 ORTHO05D007669 1.3e-45 187.2 128 78.1
PGR044G0028 Punica granatum HOM05D006291 ORTHO05D007669 1.3e-45 187.2 128 77.3
Ciclev10009894m.g Citrus clementina HOM05D006291 ORTHO05D007669 1.7e-45 186.8 128 77.3
Aqoxy7G02914 Aquilegia oxysepala HOM05D006291 ORTHO05D007669 2.2e-45 186.4 128 76.6
Thecc.10G119800 Theobroma cacao HOM05D006291 ORTHO05D007669 2.2e-45 186.4 127 79.5
Rhsim01G0107900 Rhododendron simsii HOM05D006291 ORTHO05D007669 3.7e-45 185.7 127 77.2
Sabra06G0060300 Salix brachista HOM05D006291 ORTHO05D007669 3.7e-45 185.7 128 77.3
CSS0003994 Camellia sinensis var. sinensis HOM05D006291 ORTHO05D007669 4.8e-45 185.3 128 77.3
CSS0013846 Camellia sinensis var. sinensis HOM05D006291 ORTHO05D007669 4.8e-45 185.3 128 77.3
PSO170G1648 Papaver somniferum HOM05D006291 ORTHO05D007669 6.3e-45 184.9 128 76.6
Carub.0013s0004 Capsella rubella HOM05D006291 ORTHO05D007669 1.1e-44 184.1 128 75.8
Migut.L01922 Erythranthe guttata HOM05D006291 ORTHO05D007669 1.1e-44 184.1 128 76.6
HanXRQChr10g0309491 Helianthus annuus HOM05D006291 ORTHO05D007669 1.1e-44 184.1 126 78.6
PSO063G7114 Papaver somniferum HOM05D006291 ORTHO05D007669 1.4e-44 183.7 128 75.8
Peaxi162Scf00474g00519 Petunia axillaris HOM05D006291 ORTHO05D007669 1.4e-44 183.7 128 75.8
HPP92_021942 Vanilla planifolia HOM05D006291 ORTHO05D007669 1.4e-44 183.7 128 75.0
MD13G1231800 Malus domestica HOM05D006291 ORTHO05D007669 2.4e-44 183.0 128 75.8
RcHm_v2.0_Chr4g0397141 Rosa chinensis HOM05D006291 ORTHO05D007669 4.1e-44 182.2 128 75.0
CiPaw.16G104700 Carya illinoinensis HOM05D006291 ORTHO05D007669 5.3e-44 181.8 128 76.6
Prupe.1G063000 Prunus persica HOM05D006291 ORTHO05D007669 6.9e-44 181.4 128 75.8
HPP92_021968 Vanilla planifolia HOM05D006291 ORTHO05D007669 1.2e-43 180.6 127 74.0
ATR0580G035 Amborella trichopoda HOM05D006291 ORTHO05D007669 2.0e-43 179.9 129 74.4
CDE02G3570 Ceratophyllum demersum HOM05D006291 ORTHO05D007669 2.6e-43 179.5 125 76.0
Eucgr.G00957 Eucalyptus grandis HOM05D006291 ORTHO05D007669 2.6e-43 179.5 128 72.7
Zm00001eb240760 Zea mays HOM05D006291 ORTHO05D007669 2.6e-43 179.5 128 71.1
CDE06G0918 Ceratophyllum demersum HOM05D006291 ORTHO05D007669 5.9e-43 178.3 125 74.4
CsaV3_2G009230 Cucumis sativus L. HOM05D006291 ORTHO05D007669 1.0e-42 177.6 119 79.0
FAN07G2657 Fragaria x ananassa HOM05D006291 ORTHO05D007669 1.0e-42 177.6 128 72.7
FvH4_4g05950 Fragaria vesca HOM05D006291 ORTHO05D007669 1.7e-42 176.8 128 72.7
TWI63G0490 Tripterygium wilfordii HOM05D006291 ORTHO05D007669 1.7e-42 176.8 128 73.4
CSS0029803 Camellia sinensis var. sinensis HOM05D006291 ORTHO05D007669 2.2e-42 176.4 134 73.1
FAN22G0966 Fragaria x ananassa HOM05D006291 ORTHO05D007669 2.2e-42 176.4 128 72.7
MD16G1236600 Malus domestica HOM05D006291 ORTHO05D007669 2.2e-42 176.4 128 73.4
Potri.018G149200 Populus trichocarpa HOM05D006291 ORTHO05D007669 2.9e-42 176.0 128 72.7
unitig_8.g3543 Utricularia gibba HOM05D006291 ORTHO05D007669 2.9e-42 176.0 126 74.6
AT2G07340 Arabidopsis thaliana HOM05D006291 ORTHO05D007669 5.0e-42 175.3 128 71.1
Sp6g13890 Schrenkiella parvula HOM05D006291 ORTHO05D007669 8.5e-42 174.5 127 73.2
CDE06G1428 Ceratophyllum demersum HOM05D006291 ORTHO05D007669 1.1e-41 174.1 136 69.1
Thhalv10015026m.g Eutrema salsugineum HOM05D006291 ORTHO05D007669 2.5e-41 172.9 127 74.0
FAN12G2114 Fragaria x ananassa HOM05D006291 ORTHO05D007669 2.5e-41 172.9 130 70.8
Sed0008839 Sechium edule HOM05D006291 ORTHO05D007669 2.5e-41 172.9 121 79.3
MELO3C003910.2 Cucumis melo HOM05D006291 ORTHO05D007669 3.2e-41 172.6 130 71.5
Lsat_1_v5_gn_5_80980 Lactuca sativa HOM05D006291 ORTHO05D007669 4.2e-41 172.2 128 75.8
CANSAT56G1353 Cannabis sativa HOM05D006291 ORTHO05D007669 7.2e-41 171.4 128 71.1
Hund19355 Selenicereus undatus HOM05D006291 ORTHO05D007669 3.6e-40 169.1 119 77.3
BcaB01g04158 Brassica carinata HOM05D006291 ORTHO05D007669 7.9e-40 167.9 136 66.9
CANSAT56G3141 Cannabis sativa HOM05D006291 ORTHO05D007669 1.0e-39 167.5 128 70.3
Aa31LG8G11030 Aethionema arabicum HOM05D006291 ORTHO05D007669 1.8e-39 166.8 171 57.3
BcaC01g06135 Brassica carinata HOM05D006291 ORTHO05D007669 3.9e-39 165.6 127 70.1
A03p16050 Brassica napus HOM05D006291 ORTHO05D007669 3.9e-39 165.6 127 70.9
C03p18890 Brassica napus HOM05D006291 ORTHO05D007669 3.9e-39 165.6 127 70.1
Medtr8g039140 Medicago truncatula HOM05D006291 ORTHO05D007669 5.2e-39 165.2 103 85.4
Oeu028819.1 Olea europaea HOM05D006291 ORTHO05D007669 1.5e-38 163.7 112 78.6
Dinv26485 Davidia involucrata HOM05D006291 ORTHO05D007669 1.1e-36 157.5 125 71.2
MBI16_g09344_MAGBIO Magnolia biondii HOM05D006291 ORTHO05D007669 4.2e-33 145.6 185 50.8
Pp3c19_4350 Physcomitrium patens HOM05D006291 ORTHO05D007669 4.2e-33 145.6 140 55.7
DCAR_020455 Daucus carota HOM05D006291 ORTHO05D007669 7.2e-33 144.8 103 76.7
TWI32G0019 Tripterygium wilfordii HOM05D006291 ORTHO05D007669 1.6e-32 143.7 116 69.0
Mapoly0027s0144 Marchantia polymorpha HOM05D006291 ORTHO05D007669 2.0e-30 136.7 128 54.7
Atru.BG.15.p Acer truncatum HOM05D006291 ORTHO05D007669 3.3e-30 136.0 100 74.0
Actinidia02472 Actinidia chinensis HOM05D006291 ORTHO05D007669 5.7e-30 135.2 104 70.2
AL3G44130 Arabidopsis lyrata HOM05D006291 ORTHO05D007669 2.8e-29 132.9 98 70.4
Nitab4.5_0000170g0080 Nicotiana tabacum HOM05D006291 ORTHO05D007669 1.8e-28 130.2 96 71.9
Dinv12620 Davidia involucrata HOM05D006291 ORTHO05D007669 1.7e-26 123.6 92 73.9
SMO200G0161 Selaginella moellendorffii HOM05D006291 ORTHO05D007669 2.2e-26 123.2 119 52.1
BraA03t10896Z Brassica rapa HOM05D006291 ORTHO05D007669 1.4e-23 114.0 91 69.2
BcaC04g20645 Brassica carinata HOM05D006291 ORTHO05D007669 4.0e-23 112.5 92 68.5
BolC9t56988H Brassica oleracea HOM05D006291 ORTHO05D007669 3.4e-22 109.4 91 67.0
C09p41100 Brassica napus HOM05D006291 ORTHO05D007669 7.5e-22 108.2 93 65.6
AagrBONN_evm.TU.Sc2ySwM_362.1895 Anthoceros agrestis HOM05D006291 ORTHO05D007669 1.7e-21 107.1 99 52.5
SalBow3G3584 Salvia bowleyana HOM05D006291 ORTHO05D007669 1.7e-21 107.1 108 59.3
Nitab4.5_0002603g0030 Nicotiana tabacum HOM05D006291 ORTHO05D007669 2.4e-20 103.2 70 77.1
CARHR104040 Cardamine hirsuta HOM05D006291 ORTHO05D007669 3.1e-20 102.8 78 67.9
Os02g0462900 Oryza sativa ssp. japonica HOM05D006291 ORTHO05D007669 1.6e-19 100.5 62 77.4
ClCG11G011210 Citrullus lanatus HOM05D006291 ORTHO05D007669 2.3e-18 96.7 62 79.0
BolC3t14280H Brassica oleracea HOM05D006291 ORTHO05D007669 1.5e-17 94.0 62 75.8
SEGI_05817 Sequoiadendron giganteum HOM05D006291 ORTHO05D007669 3.6e-16 89.4 63 69.8
BolC3t14281H Brassica oleracea HOM05D006291 ORTHO05D007669 1.0e-15 87.8 64 70.3
BcaB08g35517 Brassica carinata HOM05D006291 ORTHO05D007669 3.0e-15 86.3 64 68.8
Cpa.g.sc91.61 Carica papaya HOM05D006291 ORTHO05D007669 4.0e-15 85.9 55 81.8
Actinidia07563 Actinidia chinensis HOM05D006291 ORTHO05D007669 8.8e-15 84.7 66 71.2
PRCOL_00006384 Prasinoderma coloniale HOM05D006291 ORTHO05D007669 8.6e-10 68.2 117 31.6
vmacro20755 Vaccinium macrocarpon HOM05D006291 ORTHO05D007669 2.5e-09 66.6 40 82.5
CBR_g16047 Chara braunii HOM05D006291 ORTHO05D007669 2.1e-08 63.5 61 47.5
Haze_19088 Corylus avellana HOM05D000287 ORTHO05D000319 6.1e-08 62.0 42 71.4
MCO11G208 Micromonas commoda HOM05D006291 ORTHO05D007669 2.3e-07 60.1 115 32.2


User provided reference genes

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