Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SCS43X Arachis hypogaea HOM05D007495 ORTHO05D009552 2.0e-77 292.4 149 100.0
arahy.Tifrunner.gnm1.ann1.KSB81E Arachis hypogaea HOM05D002446 ORTHO05D002941 1.7e-31 139.8 76 89.5
arahy.Tifrunner.gnm1.ann1.0C4R8T Arachis hypogaea HOM05D002446 ORTHO05D016628 4.9e-31 138.3 73 91.8
arahy.Tifrunner.gnm1.ann1.XALJ0Y Arachis hypogaea HOM05D002446 ORTHO05D002941 1.4e-30 136.7 73 93.2
arahy.Tifrunner.gnm1.ann1.JQQ4L1 Arachis hypogaea HOM05D002446 ORTHO05D001054 2.4e-30 136.0 106 67.9
arahy.Tifrunner.gnm1.ann1.F5YJ3L Arachis hypogaea HOM05D007495 ORTHO05D009552 1.1e-22 110.5 59 93.2
arahy.Tifrunner.gnm1.ann1.KUS9HA Arachis hypogaea HOM05D007495 ORTHO05D009552 4.6e-21 105.1 56 91.1
Ca_01373_v3 Cicer arietinum L. HOM05D002446 ORTHO05D002941 6.2e-18 94.7 73 64.4
Lalb_Chr14g0374471 Lupinus albus HOM05D002446 ORTHO05D002941 7.6e-16 87.8 75 62.7
TPR.G11628 Trifolium pratense HOM05D002446 ORTHO05D002941 7.6e-16 87.8 73 58.9
arahy.Tifrunner.gnm1.ann1.7AH051 Arachis hypogaea HOM05D000145 ORTHO05D000115 1.7e-15 86.7 46 87.0
arahy.Tifrunner.gnm1.ann1.V2BP3N Arachis hypogaea HOM05D000145 ORTHO05D000115 1.7e-15 86.7 46 87.0
Medtr2g095700 Medicago truncatula HOM05D002446 ORTHO05D002941 4.9e-15 85.1 73 57.5
Lj3g0002991 Lotus japonicus HOM05D002446 ORTHO05D002941 8.4e-15 84.3 73 57.5
QL01p015626 Quercus lobata HOM05D002446 ORTHO05D002941 1.1e-14 84.0 71 59.2
Psat5g281200 Pisum sativum HOM05D002446 ORTHO05D002941 3.2e-14 82.4 73 57.5
Glyma.13G322800 Glycine max HOM05D002446 ORTHO05D002941 5.4e-14 81.6 77 59.7
Cfa010305 Carpinus fangiana HOM05D002446 ORTHO05D002941 1.6e-13 80.1 71 57.7
Aa31LG5G8040 Aethionema arabicum HOM05D002446 ORTHO05D002941 2.1e-13 79.7 202 28.2
Haze_23730 Corylus avellana HOM05D002446 ORTHO05D002941 3.5e-13 79.0 71 57.7
Phvul.005G131200 Phaseolus vulgaris HOM05D002446 ORTHO05D002941 4.6e-13 78.6 71 60.6
VMungo1080G0537 Vigna mungo HOM05D002446 ORTHO05D002941 1.0e-12 77.4 71 57.7
RcHm_v2.0_Chr5g0057471 Rosa chinensis HOM05D002446 ORTHO05D002941 1.8e-12 76.6 75 56.0
Dinv29364 Davidia involucrata HOM05D002446 ORTHO05D002941 3.0e-12 75.9 76 53.9
Lj2A1012T37 Lonicera japonica HOM05D002446 ORTHO05D002941 1.1e-11 73.9 72 54.2
FAN16G1400 Fragaria x ananassa HOM05D002446 ORTHO05D002941 1.5e-11 73.6 75 54.7
Glyma.13G322700 Glycine max HOM05D007495 ORTHO05D009552 1.5e-11 73.6 58 56.9
Lalb_Chr24g0394861 Lupinus albus HOM05D007495 ORTHO05D009552 1.5e-11 73.6 55 61.8
VMungo1080G0225 Vigna mungo HOM05D007495 ORTHO05D009552 1.5e-11 73.6 58 56.9
Prupe.6G109300 Prunus persica HOM05D002446 ORTHO05D002941 2.5e-11 72.8 64 59.4
Phvul.005G131100 Phaseolus vulgaris HOM05D007495 ORTHO05D009552 3.3e-11 72.4 58 53.4
Nn6g35262 Nelumbo nucifera HOM05D007495 ORTHO05D009552 4.3e-11 72.0 55 58.2
Ah.01g003160 Amaranthus hybridus HOM05D007495 ORTHO05D009552 5.6e-11 71.6 53 62.3
HanXRQChr10g0313301 Helianthus annuus HOM05D002446 ORTHO05D002941 5.6e-11 71.6 76 50.0
TAR633G0467 Trochodendron aralioides HOM05D002446 ORTHO05D002941 5.6e-11 71.6 73 52.1
FvH4_3g30940 Fragaria vesca HOM05D002446 ORTHO05D002941 7.4e-11 71.2 75 52.0
FAN25G2647 Fragaria x ananassa HOM05D002446 ORTHO05D002941 7.4e-11 71.2 75 52.0
Lsat_1_v5_gn_6_44060 Lactuca sativa HOM05D002446 ORTHO05D002941 9.6e-11 70.9 75 45.3
Potri.009G006900 Populus trichocarpa HOM05D002446 ORTHO05D002941 9.6e-11 70.9 73 52.1
GSVIVG01031491001 Vitis vinifera HOM05D007495 ORTHO05D009552 9.6e-11 70.9 54 61.1
Ciclev10029419m.g Citrus clementina HOM05D007495 ORTHO05D009552 2.1e-10 69.7 50 60.0
MD00G1032500 Malus domestica HOM05D002446 ORTHO05D002941 2.1e-10 69.7 70 55.7
TAR633G0300 Trochodendron aralioides HOM05D007495 ORTHO05D009552 2.8e-10 69.3 55 60.0
Migut.D02281 Erythranthe guttata HOM05D002446 ORTHO05D002941 3.7e-10 68.9 73 49.3
PSO339G6334 Papaver somniferum HOM05D002446 ORTHO05D002941 3.7e-10 68.9 71 52.1
Sabra09G0004000 Salix brachista HOM05D002446 ORTHO05D002941 3.7e-10 68.9 73 50.7
AUR62014942 Chenopodium quinoa HOM05D007495 ORTHO05D009552 4.8e-10 68.6 46 67.4
AUR62029199 Chenopodium quinoa HOM05D007495 ORTHO05D009552 4.8e-10 68.6 46 67.4
Thecc.09G349400 Theobroma cacao HOM05D002446 ORTHO05D002941 6.2e-10 68.2 73 47.9
Cpa.g.sc65.36 Carica papaya HOM05D002446 ORTHO05D002941 8.1e-10 67.8 75 56.0
TWI31G1393 Tripterygium wilfordii HOM05D002446 ORTHO05D002941 8.1e-10 67.8 73 52.1
Ciclev10028210m.g Citrus clementina HOM05D002446 ORTHO05D002941 1.1e-09 67.4 55 63.6
Duzib168G0452 Durio zibethinus HOM05D002446 ORTHO05D002941 1.1e-09 67.4 73 50.7
Oeu018478.1 Olea europaea HOM05D002446 ORTHO05D002941 1.1e-09 67.4 67 55.2
Manes.04G014700 Manihot esculenta HOM05D002446 ORTHO05D002941 1.4e-09 67.0 87 43.7
Aqoxy1G01135 Aquilegia oxysepala HOM05D007495 ORTHO05D009552 1.8e-09 66.6 62 53.2
CANSAT80G1262 Cannabis sativa HOM05D002446 ORTHO05D002941 2.4e-09 66.2 39 79.5
CANSAT80G1316 Cannabis sativa HOM05D002446 ORTHO05D002941 2.4e-09 66.2 39 79.5
CANSAT80G1879 Cannabis sativa HOM05D002446 ORTHO05D002941 2.4e-09 66.2 39 79.5
COL.COLO4_11064 Corchorus olitorius HOM05D002446 ORTHO05D002941 2.4e-09 66.2 51 58.8
Prupe.6G109500 Prunus persica HOM05D007495 ORTHO05D009552 2.4e-09 66.2 50 64.0
Hma1.2p1_0051F.1_g029290 Hydrangea macrophylla HOM05D002446 ORTHO05D002941 3.1e-09 65.9 47 59.6
SalBow3G3637 Salvia bowleyana HOM05D007495 ORTHO05D009552 3.1e-09 65.9 53 52.8
QL01p015526 Quercus lobata HOM05D007495 ORTHO05D009552 4.0e-09 65.5 50 58.0
Atru.chr3.3537 Acer truncatum HOM05D007495 ORTHO05D009552 5.3e-09 65.1 49 55.1
EL10Ac9g22596 Beta vulgaris HOM05D007495 ORTHO05D009552 5.3e-09 65.1 49 59.2
ClCG02G021470 Citrullus lanatus HOM05D002446 ORTHO05D002941 5.3e-09 65.1 75 52.0
Medtr2g095720 Medicago truncatula HOM05D002446 ORTHO05D002941 5.3e-09 65.1 43 67.4
Atru.chr3.3539 Acer truncatum HOM05D002446 ORTHO05D002941 6.9e-09 64.7 64 53.1
Solyc11g069010.2 Solanum lycopersicum HOM05D002446 ORTHO05D002941 6.9e-09 64.7 57 57.9
Cfa010302 Carpinus fangiana HOM05D007495 ORTHO05D009552 9.0e-09 64.3 50 62.0
Cc01_g10460 Coffea canephora HOM05D007495 ORTHO05D009552 9.0e-09 64.3 49 59.2
Eucgr.J00367 Eucalyptus grandis HOM05D002446 ORTHO05D002941 9.0e-09 64.3 70 50.0
AUR62029202 Chenopodium quinoa HOM05D002446 ORTHO05D002941 1.2e-08 63.9 56 57.1
Haze_23728 Corylus avellana HOM05D007495 ORTHO05D009552 1.2e-08 63.9 50 60.0
HanXRQChr09g0259381 Helianthus annuus HOM05D007495 ORTHO05D009552 1.2e-08 63.9 58 51.7
MBI11_g41957_MAGBIO Magnolia biondii HOM05D007495 ORTHO05D009552 1.2e-08 63.9 61 49.2
Sopen11g027720 Solanum pennellii HOM05D002446 ORTHO05D002941 1.2e-08 63.9 57 57.9
vmacro03266 Vaccinium macrocarpon HOM05D002446 ORTHO05D002941 1.2e-08 63.9 74 48.6
ATR1132G058 Amborella trichopoda HOM05D007495 ORTHO05D009552 1.5e-08 63.5 55 54.5
DCAR_018779 Daucus carota HOM05D002446 ORTHO05D002941 1.5e-08 63.5 51 62.7
Sabra04G0146300 Salix brachista HOM05D007495 ORTHO05D009552 1.5e-08 63.5 46 60.9
SGA_v2.0_scaffold436G51603 Striga asiatica HOM05D007495 ORTHO05D009552 1.5e-08 63.5 60 48.3
THA.LOC104826383 Tarenaya hassleriana HOM05D002446 ORTHO05D002941 1.5e-08 63.5 61 50.8
MSTRG.17767 Avicennia marina HOM05D007495 ORTHO05D009552 2.0e-08 63.2 57 47.4
Sed0010722 Sechium edule HOM05D007495 ORTHO05D009552 2.0e-08 63.2 49 59.2
Hund01470 Selenicereus undatus HOM05D002446 ORTHO05D002941 2.0e-08 63.2 86 38.4
Aqoxy2G01739 Aquilegia oxysepala HOM05D002446 ORTHO05D002941 2.6e-08 62.8 72 50.0
Gohir.A08G200300 Gossypium hirsutum HOM05D002446 ORTHO05D002941 2.6e-08 62.8 73 46.6
Gohir.D08G217500 Gossypium hirsutum HOM05D002446 ORTHO05D002941 2.6e-08 62.8 73 46.6
Hma1.2p1_0051F.1_g029310 Hydrangea macrophylla HOM05D007495 ORTHO05D009552 2.6e-08 62.8 50 56.0
Hund08367 Selenicereus undatus HOM05D007495 ORTHO05D009552 2.6e-08 62.8 46 58.7
CiPaw.13G124600 Carya illinoinensis HOM05D007495 ORTHO05D009552 3.4e-08 62.4 58 50.0
COL.COLO4_11063 Corchorus olitorius HOM05D002446 ORTHO05D002941 3.4e-08 62.4 71 45.1
Oeu018477.1 Olea europaea HOM05D007495 ORTHO05D009552 3.4e-08 62.4 50 58.0
Rhsim13G0099400 Rhododendron simsii HOM05D002446 ORTHO05D002941 3.4e-08 62.4 74 48.6
Carub.0004s0887 Capsella rubella HOM05D002446 ORTHO05D002941 4.5e-08 62.0 45 66.7
CsaV3_6G014260 Cucumis sativus L. HOM05D002446 ORTHO05D002941 4.5e-08 62.0 71 49.3
Eucgr.J00379 Eucalyptus grandis HOM05D002446 ORTHO05D002941 4.5e-08 62.0 54 55.6
SalBow1G5708 Salvia bowleyana HOM05D007495 ORTHO05D009552 4.5e-08 62.0 53 49.1
Sed0004628 Sechium edule HOM05D002446 ORTHO05D002941 4.5e-08 62.0 53 60.4
Actinidia24135 Actinidia chinensis HOM05D002446 ORTHO05D002941 5.8e-08 61.6 63 55.6
Eucgr.B03939 Eucalyptus grandis HOM05D007495 ORTHO05D009552 5.8e-08 61.6 46 56.5
PSO210G3489 Papaver somniferum HOM05D007495 ORTHO05D009552 5.8e-08 61.6 66 48.5
THA.LOC104800583 Tarenaya hassleriana HOM05D007495 ORTHO05D009552 5.8e-08 61.6 55 50.9
EL10Ac9g22590 Beta vulgaris HOM05D002446 ORTHO05D002941 7.6e-08 61.2 52 57.7
AUR62014939 Chenopodium quinoa HOM05D002446 ORTHO05D002941 7.6e-08 61.2 56 53.6
Gorai.004G231200 Gossypium raimondii HOM05D002446 ORTHO05D002941 7.6e-08 61.2 73 45.2
Lj2C1012G12 Lonicera japonica HOM05D007495 ORTHO05D009552 7.6e-08 61.2 53 50.9
MELO3C026905.2 Cucumis melo HOM05D002446 ORTHO05D002941 9.9e-08 60.8 75 48.0
Migut.N02567 Erythranthe guttata HOM05D007495 ORTHO05D009552 9.9e-08 60.8 56 46.4
Thhalv10017338m.g Eutrema salsugineum HOM05D007495 ORTHO05D009552 9.9e-08 60.8 61 49.2
MD11G1146400 Malus domestica HOM05D007495 ORTHO05D009552 9.9e-08 60.8 50 56.0
Manes.04G014200 Manihot esculenta HOM05D007495 ORTHO05D009552 9.9e-08 60.8 45 64.4
Nitab4.5_0000329g0280 Nicotiana tabacum HOM05D007495 ORTHO05D009552 9.9e-08 60.8 46 56.5
Nitab4.5_0005092g0010 Nicotiana tabacum HOM05D007495 ORTHO05D009552 9.9e-08 60.8 52 51.9
Solyc11g066240.3 Solanum lycopersicum HOM05D007495 ORTHO05D009552 9.9e-08 60.8 44 61.4
Sopen11g025970 Solanum pennellii HOM05D007495 ORTHO05D009552 9.9e-08 60.8 44 61.4
Actinidia24137 Actinidia chinensis HOM05D007495 ORTHO05D009552 1.3e-07 60.5 49 55.1
CSS0017583 Camellia sinensis var. sinensis HOM05D007495 ORTHO05D009552 1.3e-07 60.5 52 51.9
CAN.G546.18 Capsicum annuum HOM05D002446 ORTHO05D002941 1.3e-07 60.5 49 61.2
ClCG02G021490 Citrullus lanatus HOM05D007495 ORTHO05D009552 1.3e-07 60.5 48 58.3
ECA233G0707 Erigeron canadensis HOM05D002446 ORTHO05D002941 1.3e-07 60.5 72 44.4
Potri.004G215300 Populus trichocarpa HOM05D007495 ORTHO05D009552 1.3e-07 60.5 46 58.7
PGR102G0900 Punica granatum HOM05D007495 ORTHO05D009552 1.3e-07 60.5 47 53.2
Sopen01g017570 Solanum pennellii HOM05D007495 ORTHO05D009552 1.3e-07 60.5 44 61.4
Thecc.09G349200 Theobroma cacao HOM05D002446 ORTHO05D002941 1.3e-07 60.5 51 60.8
vmacro03264 Vaccinium macrocarpon HOM05D007495 ORTHO05D009552 1.3e-07 60.5 46 54.3
Ah.01g003200 Amaranthus hybridus HOM05D002446 ORTHO05D002941 1.7e-07 60.1 54 51.9
CSS0041005 Camellia sinensis var. sinensis HOM05D002446 ORTHO05D002941 1.7e-07 60.1 71 47.9
CsaV3_6G014270 Cucumis sativus L. HOM05D007495 ORTHO05D009552 1.7e-07 60.1 49 57.1
Lsat_1_v5_gn_2_96660 Lactuca sativa HOM05D007495 ORTHO05D009552 1.7e-07 60.1 52 51.9
MELO3C026944.2 Cucumis melo HOM05D007495 ORTHO05D009552 2.2e-07 59.7 49 57.1
Manes.11G151202 Manihot esculenta HOM05D002446 ORTHO05D002941 2.2e-07 59.7 51 52.9
Peaxi162Scf00892g00019 Petunia axillaris HOM05D007495 ORTHO05D009552 2.2e-07 59.7 56 48.2
PGSC0003DMG400010906 Solanum tuberosum HOM05D007495 ORTHO05D009552 2.2e-07 59.7 44 59.1
CAN.G546.21 Capsicum annuum HOM05D007495 ORTHO05D009552 2.9e-07 59.3 46 54.3
CARHR120860 Cardamine hirsuta HOM05D002446 ORTHO05D002941 2.9e-07 59.3 39 69.2
FAN21G3793 Fragaria x ananassa HOM05D007495 ORTHO05D009552 2.9e-07 59.3 53 52.8
Oeu029890.1 Olea europaea HOM05D002446 ORTHO05D002941 2.9e-07 59.3 43 67.4
PGSC0003DMG400019638 Solanum tuberosum HOM05D002446 ORTHO05D002941 2.9e-07 59.3 57 52.6
MBI19_g35849_MAGBIO Magnolia biondii HOM05D002446 ORTHO05D002941 3.8e-07 58.9 40 67.5
PSO210G2188 Papaver somniferum HOM05D007495 ORTHO05D009552 3.8e-07 58.9 66 47.0
Peaxi162Scf00892g00124 Petunia axillaris HOM05D002446 ORTHO05D002941 3.8e-07 58.9 58 53.4
RcHm_v2.0_Chr5g0057451 Rosa chinensis HOM05D007495 ORTHO05D009552 3.8e-07 58.9 52 50.0
SalBow3G4404 Salvia bowleyana HOM05D002446 ORTHO05D002941 3.8e-07 58.9 43 58.1
PGSC0003DMG400000407 Solanum tuberosum HOM05D007495 ORTHO05D009552 3.8e-07 58.9 44 56.8
CSS0045964 Camellia sinensis var. sinensis HOM05D002446 ORTHO05D002941 4.9e-07 58.5 71 47.9
Nitab4.5_0000329g0260 Nicotiana tabacum HOM05D002446 ORTHO05D002941 4.9e-07 58.5 60 48.3
A04p21330 Brassica napus HOM05D002446 ORTHO05D002941 6.4e-07 58.2 43 60.5
CARHR120870 Cardamine hirsuta HOM05D007495 ORTHO05D009552 6.4e-07 58.2 61 45.9
FAN25G1473 Fragaria x ananassa HOM05D007495 ORTHO05D009552 6.4e-07 58.2 47 55.3
Nitab4.5_0011893g0010 Nicotiana tabacum HOM05D002446 ORTHO05D002941 6.4e-07 58.2 60 48.3
BraA04t17699Z Brassica rapa HOM05D002446 ORTHO05D002941 8.4e-07 57.8 43 60.5
DCAR_018778 Daucus carota HOM05D007495 ORTHO05D009552 8.4e-07 57.8 50 54.0
Rhsim13G0099600 Rhododendron simsii HOM05D007495 ORTHO05D009552 8.4e-07 57.8 49 55.1
THA.LOC104808393 Tarenaya hassleriana HOM05D007495 ORTHO05D009552 8.4e-07 57.8 55 49.1
Carub.0004s0888 Capsella rubella HOM05D007495 ORTHO05D009552 1.1e-06 57.4 56 48.2
Cc01_g10480 Coffea canephora HOM05D002446 ORTHO05D002941 1.1e-06 57.4 43 60.5
Sp4g10910 Schrenkiella parvula HOM05D007495 ORTHO05D009552 1.1e-06 57.4 64 42.2
Zm00001eb074120 Zea mays HOM05D002446 ORTHO05D002941 1.4e-06 57.0 48 56.2
Thhalv10016468m.g Eutrema salsugineum HOM05D002446 ORTHO05D002941 1.9e-06 56.6 45 55.6
AT2G28105 Arabidopsis thaliana HOM05D007495 ORTHO05D009552 2.4e-06 56.2 61 44.3
BcaB01g03091 Brassica carinata HOM05D007495 ORTHO05D009552 2.4e-06 56.2 56 46.4
BcaC01g04959 Brassica carinata HOM05D007495 ORTHO05D009552 2.4e-06 56.2 56 46.4
BcaC02g08208 Brassica carinata HOM05D002446 ORTHO05D002941 2.4e-06 56.2 43 60.5
A03p26400 Brassica napus HOM05D007495 ORTHO05D009552 2.4e-06 56.2 56 46.4
C03p31690 Brassica napus HOM05D007495 ORTHO05D009552 2.4e-06 56.2 56 46.4
C04p57250 Brassica napus HOM05D002446 ORTHO05D002941 2.4e-06 56.2 43 60.5
BolC3t15512H Brassica oleracea HOM05D007495 ORTHO05D009552 2.4e-06 56.2 56 46.4
BolC4t27251H Brassica oleracea HOM05D002446 ORTHO05D002941 2.4e-06 56.2 43 60.5
BraA03t11855Z Brassica rapa HOM05D007495 ORTHO05D009552 2.4e-06 56.2 56 46.4
Dinv34730 Davidia involucrata HOM05D007495 ORTHO05D009552 2.4e-06 56.2 50 54.0
TAR636G3027 Trochodendron aralioides HOM05D007495 ORTHO05D009552 2.4e-06 56.2 46 56.5
AL4G22060 Arabidopsis lyrata HOM05D002446 ORTHO05D002941 3.2e-06 55.8 64 45.3
PGR119G2270 Punica granatum HOM05D002446 ORTHO05D002941 5.5e-06 55.1 73 41.1
Sc21g0007230 Simmondsia chinensis HOM05D002446 ORTHO05D002941 5.5e-06 55.1 76 42.1
ATR0680G143 Amborella trichopoda HOM05D002446 ORTHO05D002941 9.3e-06 54.3 40 65.0
ATR0680G222 Amborella trichopoda HOM05D002446 ORTHO05D002941 9.3e-06 54.3 40 65.0
Thecc.09G349500 Theobroma cacao HOM05D007495 ORTHO05D009552 9.3e-06 54.3 44 52.3
unitig_0.g1500 Utricularia gibba HOM05D002446 ORTHO05D002941 9.3e-06 54.3 63 44.4


User provided reference genes

Program Settings