Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SC2WWN Arachis hypogaea HOM05D007411 ORTHO05D009025 1.5e-107 392.9 206 100.0
arahy.Tifrunner.gnm1.ann1.UE7NK8 Arachis hypogaea HOM05D007411 ORTHO05D009025 1.2e-104 383.3 206 97.6
Ca_24421_v3 Cicer arietinum L. HOM05D007411 ORTHO05D009025 3.4e-30 136.0 173 50.9
Psat2g190000 Pisum sativum HOM05D007411 ORTHO05D009025 2.0e-27 126.7 186 46.8
Hma1.2p1_1572F.1_g291440 Hydrangea macrophylla HOM05D007411 ORTHO05D009025 2.8e-24 116.3 123 49.6
Hma1.2p1_2201F.1_g317040 Hydrangea macrophylla HOM05D007411 ORTHO05D009025 2.8e-24 116.3 123 49.6
Cfa008473 Carpinus fangiana HOM05D007411 ORTHO05D009025 3.6e-24 115.9 109 55.0
Phvul.002G042700 Phaseolus vulgaris HOM05D007411 ORTHO05D009025 3.6e-24 115.9 173 48.0
Dinv14014 Davidia involucrata HOM05D007411 ORTHO05D009025 4.7e-24 115.5 155 45.8
Prupe.1G017200 Prunus persica HOM05D007411 ORTHO05D009025 4.7e-24 115.5 203 39.4
HanXRQChr05g0131941 Helianthus annuus HOM05D007411 ORTHO05D009025 6.1e-24 115.2 123 48.0
C06p16920 Brassica napus HOM05D007411 ORTHO05D009025 1.4e-23 114.0 131 48.1
Glyma.01G235100 Glycine max HOM05D007411 ORTHO05D009025 1.8e-23 113.6 104 59.6
Lalb_Chr05g0211151 Lupinus albus HOM05D007411 ORTHO05D009025 2.3e-23 113.2 99 55.6
VMungo1215G0970 Vigna mungo HOM05D007411 ORTHO05D009025 2.3e-23 113.2 191 44.5
BolC6t36888H Brassica oleracea HOM05D007411 ORTHO05D009025 3.0e-23 112.8 153 44.4
LjContig00222g0000468 Lotus japonicus HOM05D007411 ORTHO05D009025 5.2e-23 112.1 200 41.5
ECA236G4939 Erigeron canadensis HOM05D007411 ORTHO05D009025 1.2e-22 110.9 121 47.1
Potri.010G085000 Populus trichocarpa HOM05D007411 ORTHO05D009025 1.5e-22 110.5 114 46.5
THA.LOC104808560 Tarenaya hassleriana HOM05D007411 ORTHO05D009025 2.0e-22 110.2 161 42.2
FAN17G1166 Fragaria x ananassa HOM05D007411 ORTHO05D009025 2.6e-22 109.8 154 44.2
FvH4_4g15980 Fragaria vesca HOM05D007411 ORTHO05D009025 3.4e-22 109.4 144 45.1
Ciclev10006648m.g Citrus clementina HOM05D007411 ORTHO05D009025 4.4e-22 109.0 113 54.9
Medtr5g006900 Medicago truncatula HOM05D007411 ORTHO05D009025 4.4e-22 109.0 133 49.6
AT4G14805 Arabidopsis thaliana HOM05D007411 ORTHO05D009025 9.8e-22 107.8 146 45.2
FAN12G4330 Fragaria x ananassa HOM05D007411 ORTHO05D009025 2.2e-21 106.7 148 43.9
BcaC02g11603 Brassica carinata HOM05D007411 ORTHO05D009025 3.7e-21 105.9 170 41.2
C04p13410 Brassica napus HOM05D007411 ORTHO05D009025 3.7e-21 105.9 170 41.2
CiPaw.01G198400 Carya illinoinensis HOM05D007411 ORTHO05D009025 6.4e-21 105.1 195 40.5
ClCG06G006330 Citrullus lanatus HOM05D007411 ORTHO05D009025 6.4e-21 105.1 124 46.8
Nitab4.5_0004062g0070 Nicotiana tabacum HOM05D007411 ORTHO05D009025 8.3e-21 104.8 132 44.7
BcaC08g44271 Brassica carinata HOM05D007411 ORTHO05D009025 1.4e-20 104.0 150 43.3
A08p11480 Brassica napus HOM05D007411 ORTHO05D009025 1.4e-20 104.0 129 44.2
BraA08t33142Z Brassica rapa HOM05D007411 ORTHO05D009025 1.4e-20 104.0 129 44.2
FAN07G0509 Fragaria x ananassa HOM05D007411 ORTHO05D009025 1.4e-20 104.0 153 43.1
FAN22G0418 Fragaria x ananassa HOM05D007411 ORTHO05D009025 1.4e-20 104.0 154 43.5
Lsat_1_v5_gn_9_80381 Lactuca sativa HOM05D007411 ORTHO05D009025 1.4e-20 104.0 107 49.5
QL06p001698 Quercus lobata HOM05D007411 ORTHO05D009025 1.8e-20 103.6 174 37.9
Medtr2g049980 Medicago truncatula HOM05D007411 ORTHO05D009025 2.4e-20 103.2 174 43.1
MELO3C012663.2 Cucumis melo HOM05D007411 ORTHO05D009025 3.2e-20 102.8 123 47.2
PGR004G0639 Punica granatum HOM05D007411 ORTHO05D009025 3.2e-20 102.8 101 52.5
AL7G41060 Arabidopsis lyrata HOM05D007411 ORTHO05D009025 4.1e-20 102.4 158 42.4
Sopen09g031190 Solanum pennellii HOM05D007411 ORTHO05D009025 4.1e-20 102.4 131 46.6
Gohir.D09G219700 Gossypium hirsutum HOM05D007411 ORTHO05D009025 5.4e-20 102.1 124 47.6
Gorai.006G240700 Gossypium raimondii HOM05D007411 ORTHO05D009025 5.4e-20 102.1 124 47.6
Psat7g023320 Pisum sativum HOM05D007411 ORTHO05D009025 5.4e-20 102.1 147 46.3
BraA05t20476Z Brassica rapa HOM05D007411 ORTHO05D009025 7.0e-20 101.7 167 40.1
Gohir.A09G217300 Gossypium hirsutum HOM05D007411 ORTHO05D009025 7.0e-20 101.7 124 46.0
LjContig00222g0003473 Lotus japonicus HOM05D007411 ORTHO05D009025 7.0e-20 101.7 136 49.3
SGA_v2.0_scaffold151G36714 Striga asiatica HOM05D007411 ORTHO05D009025 7.0e-20 101.7 193 39.9
Migut.G00360 Erythranthe guttata HOM05D007411 ORTHO05D009025 9.2e-20 101.3 100 50.0
MD13G1196400 Malus domestica HOM05D007411 ORTHO05D009025 1.2e-19 100.9 118 45.8
BcaC07g37855 Brassica carinata HOM05D007411 ORTHO05D009025 1.6e-19 100.5 114 45.6
BolC8t48245H Brassica oleracea HOM05D007411 ORTHO05D009025 1.6e-19 100.5 114 45.6
SalBow2G3064 Salvia bowleyana HOM05D007411 ORTHO05D009025 1.6e-19 100.5 129 44.2
Solyc09g082310.2 Solanum lycopersicum HOM05D007411 ORTHO05D009025 2.0e-19 100.1 131 45.8
A05p16750 Brassica napus HOM05D007411 ORTHO05D009025 2.7e-19 99.8 154 40.9
RcHm_v2.0_Chr4g0415591 Rosa chinensis HOM05D007411 ORTHO05D009025 2.7e-19 99.8 117 47.0
Nitab4.5_0002307g0080 Nicotiana tabacum HOM05D007411 ORTHO05D009025 3.5e-19 99.4 132 43.9
Sp7g12940 Schrenkiella parvula HOM05D007411 ORTHO05D009025 3.5e-19 99.4 150 44.0
BcaB04g18262 Brassica carinata HOM05D007411 ORTHO05D009025 4.6e-19 99.0 131 42.7
CsaV3_7G022390 Cucumis sativus L. HOM05D007411 ORTHO05D009025 4.6e-19 99.0 111 47.7
CARHR221360 Cardamine hirsuta HOM05D007411 ORTHO05D009025 1.0e-18 97.8 160 41.2
A05p15610 Brassica napus HOM05D007411 ORTHO05D009025 1.3e-18 97.4 167 38.9
MD16G1196900 Malus domestica HOM05D007411 ORTHO05D009025 1.3e-18 97.4 93 51.6
Sed0024167 Sechium edule HOM05D007411 ORTHO05D009025 2.3e-18 96.7 130 45.4
Actinidia23528 Actinidia chinensis HOM05D007411 ORTHO05D009025 3.0e-18 96.3 128 45.3
BcaB02g07857 Brassica carinata HOM05D007411 ORTHO05D009025 5.0e-18 95.5 114 47.4
Duzib151G0508 Durio zibethinus HOM05D007411 ORTHO05D009025 6.6e-18 95.1 117 47.9
Aqoxy5G00439 Aquilegia oxysepala HOM05D007411 ORTHO05D009025 8.6e-18 94.7 131 42.0
CAN.G1094.25 Capsicum annuum HOM05D007411 ORTHO05D009025 8.6e-18 94.7 103 46.6
BraA05t20579Z Brassica rapa HOM05D007411 ORTHO05D009025 2.5e-17 93.2 217 35.9
CSS0014995 Camellia sinensis var. sinensis HOM05D007411 ORTHO05D009025 2.5e-17 93.2 110 50.9
Atru.chr4.2432 Acer truncatum HOM05D007411 ORTHO05D009025 3.3e-17 92.8 120 44.2
RcHm_v2.0_Chr4g0391821 Rosa chinensis HOM05D007411 ORTHO05D009025 3.3e-17 92.8 124 43.5
Sc13g0004560 Simmondsia chinensis HOM05D007411 ORTHO05D009025 5.6e-17 92.0 130 40.0
Thecc.04G235100 Theobroma cacao HOM05D007411 ORTHO05D009025 1.2e-16 90.9 109 45.0
Cpa.g.sc58.79 Carica papaya HOM05D007411 ORTHO05D009025 1.6e-16 90.5 134 42.5
CANSAT78G1457 Cannabis sativa HOM05D007411 ORTHO05D009025 2.1e-16 90.1 155 38.1
Nn6g34119 Nelumbo nucifera HOM05D007411 ORTHO05D009025 2.1e-16 90.1 127 42.5
TWI09G1055 Tripterygium wilfordii HOM05D007411 ORTHO05D009025 2.1e-16 90.1 145 38.6
TPR.G3913 Trifolium pratense HOM05D007411 ORTHO05D009025 3.6e-16 89.4 88 55.7
PSO210G5563 Papaver somniferum HOM05D007411 ORTHO05D009025 2.3e-15 86.7 131 39.7
Manes.03G176101 Manihot esculenta HOM05D007411 ORTHO05D009025 3.1e-15 86.3 127 40.2
Peaxi162Scf00092g00336 Petunia axillaris HOM05D007411 ORTHO05D009025 3.1e-15 86.3 90 46.7
COL.COLO4_21515 Corchorus olitorius HOM05D007411 ORTHO05D009025 4.0e-15 85.9 130 40.8
Thhalv10027383m.g Eutrema salsugineum HOM05D007411 ORTHO05D009025 4.0e-15 85.9 217 34.6
PSO832G1886 Papaver somniferum HOM05D007411 ORTHO05D009025 4.0e-15 85.9 136 39.0
DCAR_027228 Daucus carota HOM05D002080 ORTHO05D002062 1.5e-14 84.0 97 45.4
Carub.0007s2732 Capsella rubella HOM05D007411 ORTHO05D009025 9.8e-14 81.3 65 53.8
Eucgr.H03438 Eucalyptus grandis HOM05D007411 ORTHO05D009025 1.3e-13 80.9 79 53.2
CDE05G0749 Ceratophyllum demersum HOM05D007411 ORTHO05D009025 2.2e-13 80.1 106 42.5
TAR633G2267 Trochodendron aralioides HOM05D007411 ORTHO05D009025 4.9e-13 79.0 126 38.1
Potri.008G155300 Populus trichocarpa HOM05D007411 ORTHO05D009025 6.4e-13 78.6 81 44.4
PSO724G0575 Papaver somniferum HOM05D007411 ORTHO05D009025 2.3e-10 70.1 102 39.2
ATR0665G366 Amborella trichopoda HOM05D007411 ORTHO05D009025 1.2e-08 64.3 117 36.8
MBI11_g32995_MAGBIO Magnolia biondii HOM05D007411 ORTHO05D009025 1.8e-07 60.5 146 35.6
SEGI_16230 Sequoiadendron giganteum HOM05D000489 ORTHO05D000372 2.3e-07 60.1 124 36.3
SEGI_32233 Sequoiadendron giganteum HOM05D000489 ORTHO05D000372 3.1e-07 59.7 117 35.0
FvH4_3g08061 Fragaria vesca HOM05D007411 ORTHO05D009025 5.2e-07 58.9 74 41.9
SEGI_37893 Sequoiadendron giganteum HOM05D000489 ORTHO05D000372 5.2e-07 58.9 99 36.4
FvH4_3g16330 Fragaria vesca HOM05D018240 ORTHO05D025480 1.2e-06 57.8 54 46.3
Eucgr.K03348 Eucalyptus grandis HOM05D000489 ORTHO05D000372 3.4e-06 56.2 132 35.6
Lalb_Chr09g0335101 Lupinus albus HOM05D000489 ORTHO05D000372 3.4e-06 56.2 117 35.9
Ah.14g085460 Amaranthus hybridus HOM05D000489 ORTHO05D000372 5.8e-06 55.5 98 35.7
TAR633G1834 Trochodendron aralioides HOM05D007411 ORTHO05D009025 5.8e-06 55.5 97 37.1


User provided reference genes

Program Settings