Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 1.4e-245 852.4 420 100.0
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.2e-244 849.4 420 99.5
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 7.2e-229 797.0 420 92.9
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 8.7e-227 790.0 417 91.1
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 3.7e-225 784.6 417 91.4
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 4.8e-225 784.3 417 90.6
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 1.4e-224 782.7 417 89.7
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 2.4e-224 781.9 417 91.4
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 9.1e-224 780.0 453 86.3
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 4.5e-223 777.7 415 88.9
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 5.0e-222 774.2 417 89.9
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 8.5e-222 773.5 415 89.2
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 9.4e-221 770.0 417 89.4
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 1.4e-216 756.1 415 87.0
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 3.1e-216 755.0 417 86.3
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 6.1e-212 740.7 417 83.7
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 3.9e-211 738.0 414 83.6
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 1.1e-208 729.9 420 82.4
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 5.9e-207 724.2 416 82.0
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 7.7e-207 723.8 420 82.4
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 1.3e-206 723.0 419 81.6
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 5.0e-206 721.1 420 81.2
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 5.0e-206 721.1 420 81.7
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 8.5e-206 720.3 418 80.9
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.1e-205 719.9 415 81.9
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.5e-205 718.8 420 81.2
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 3.2e-205 718.4 416 81.0
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 4.2e-205 718.0 414 80.9
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 5.5e-205 717.6 420 81.0
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 9.4e-205 716.8 418 81.8
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.2e-204 716.5 416 81.0
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 1.6e-204 716.1 420 80.5
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 1.6e-204 716.1 414 80.9
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 2.1e-204 715.7 420 82.9
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 2.7e-204 715.3 442 77.8
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 2.7e-204 715.3 420 81.7
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 4.7e-204 714.5 414 81.2
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 8.0e-204 713.8 418 79.9
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.0e-203 713.4 416 81.2
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 2.3e-203 712.2 416 81.0
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 2.3e-203 712.2 420 80.2
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.3e-203 712.2 420 81.0
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 4.0e-203 711.4 416 81.2
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 4.0e-203 711.4 418 80.4
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 5.2e-203 711.1 438 78.5
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 8.8e-203 710.3 418 79.7
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 1.5e-202 709.5 416 80.3
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 7.5e-202 707.2 415 80.0
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 1.3e-201 706.4 418 79.9
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 1.7e-201 706.1 419 79.5
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 2.8e-201 705.3 420 79.0
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 2.8e-201 705.3 418 80.4
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 1.4e-200 703.0 418 79.4
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 3.1e-200 701.8 420 79.3
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 7.0e-200 700.7 418 80.1
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.2e-199 699.9 416 78.6
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 4.5e-199 698.0 418 78.5
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 1.0e-198 696.8 437 76.7
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 1.3e-198 696.4 416 80.0
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 1.7e-198 696.0 418 79.4
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 2.9e-198 695.3 418 79.4
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 2.9e-198 695.3 420 79.3
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 1.9e-197 692.6 420 77.6
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 2.5e-197 692.2 437 76.7
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 3.2e-197 691.8 418 78.7
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 1.6e-196 689.5 418 76.6
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 6.1e-196 687.6 411 77.9
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 8.0e-196 687.2 416 77.6
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 4.0e-195 684.9 434 76.3
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 5.2e-195 684.5 418 78.5
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 8.8e-195 683.7 416 79.1
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 8.8e-195 683.7 418 77.8
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.2e-194 683.3 418 77.8
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 1.2e-194 683.3 420 76.0
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 2.0e-194 682.6 418 75.6
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 2.0e-194 682.6 421 78.1
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 2.6e-194 682.2 418 77.8
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 2.6e-194 682.2 417 75.3
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 2.6e-194 682.2 420 76.9
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 7.5e-194 680.6 430 77.2
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 9.8e-194 680.2 415 76.9
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 1.7e-193 679.5 416 76.7
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.2e-193 679.1 434 75.8
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 2.2e-193 679.1 418 77.3
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 2.8e-193 678.7 414 76.3
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 2.8e-193 678.7 416 76.7
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.8e-193 678.7 419 76.4
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.8e-193 678.7 420 77.6
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 2.8e-193 678.7 420 76.2
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 3.7e-193 678.3 416 76.7
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.8e-192 676.0 434 75.3
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 2.4e-192 675.6 420 76.2
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 5.4e-192 674.5 420 77.1
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 7.0e-192 674.1 416 76.2
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 7.0e-192 674.1 416 76.0
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 1.6e-191 672.9 416 77.2
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 3.5e-191 671.8 415 76.6
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 7.7e-191 670.6 417 76.5
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 1.7e-190 669.5 416 75.7
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 5.0e-190 667.9 422 75.6
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 6.5e-190 667.5 416 76.7
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 1.9e-189 666.0 418 76.3
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.9e-189 666.0 419 75.2
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 9.5e-189 663.7 417 74.6
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 1.6e-188 662.9 417 75.1
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 1.0e-187 660.2 409 78.2
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.3e-187 659.1 419 74.9
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 2.3e-187 659.1 413 74.3
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 2.6e-186 655.6 458 69.0
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 7.5e-186 654.1 412 76.5
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 9.8e-186 653.7 419 72.1
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 1.3e-185 653.3 417 74.6
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 1.3e-185 653.3 412 74.3
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 1.7e-185 652.9 412 74.3
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 2.8e-185 652.1 420 75.0
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 1.1e-184 650.2 416 75.0
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 3.1e-184 648.7 411 74.5
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 3.1e-184 648.7 418 74.9
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 1.0e-182 643.7 420 71.7
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 2.3e-182 642.5 414 72.9
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 3.8e-182 641.7 363 83.5
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 5.0e-182 641.3 342 88.9
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 1.5e-181 639.8 415 71.8
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 2.1e-180 636.0 420 73.8
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 2.1e-180 636.0 417 71.7
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 8.0e-180 634.0 420 74.8
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 1.4e-179 633.3 502 62.2
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 3.7e-177 625.2 368 79.9
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 4.9e-177 624.8 419 72.3
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 1.9e-173 612.8 411 70.6
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 4.0e-171 605.1 360 78.9
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 5.2e-171 604.7 363 78.2
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 4.4e-170 601.7 411 70.3
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 3.0e-166 589.0 416 70.0
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 4.4e-162 575.1 341 78.9
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 1.5e-157 560.1 412 63.8
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 4.4e-154 548.5 412 61.7
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 7.1e-152 541.2 437 63.4
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.3e-150 537.0 317 84.9
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 1.9e-149 533.1 417 62.6
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 1.8e-147 526.6 411 59.9
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 2.4e-144 516.2 410 59.0
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 2.6e-138 496.1 301 78.7
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 7.9e-135 484.6 427 54.8
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.6e-132 476.9 345 67.2
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 3.7e-124 449.1 302 74.2
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 8.2e-124 448.0 235 92.8
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 9.0e-115 417.9 223 86.5
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 1.0e-110 404.4 291 67.7
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 3.7e-108 396.0 421 49.2
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 1.3e-105 387.5 498 42.0
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 1.3e-100 370.9 244 73.0
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 1.7e-100 370.5 406 47.8
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 5.0e-97 359.0 198 84.8
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 6.5e-97 358.6 411 45.7
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.1e-95 353.6 198 83.3
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 8.8e-86 321.6 226 75.7
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 2.9e-81 306.6 225 67.6
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 2.1e-71 273.9 156 84.0
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 6.1e-71 272.3 258 56.6
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 7.5e-69 265.4 178 70.8
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.3e-68 264.6 167 79.6
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 7.5e-61 238.8 178 66.3
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 7.0e-59 232.3 160 70.0
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 1.3e-57 228.0 229 54.1
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 1.3e-52 211.5 129 75.2
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.2e-52 210.7 124 77.4
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.6e-50 204.5 121 76.0
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.3e-49 200.7 181 57.5
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.9e-48 197.6 339 37.8
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.4e-46 191.4 126 72.2
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.0e-45 187.6 345 37.4
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.6e-37 160.6 122 63.1
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 4.9e-36 156.4 87 90.8
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 1.5e-32 144.8 95 72.6
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 5.8e-29 132.9 128 54.7
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 2.7e-26 124.0 71 81.7
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 1.3e-25 121.7 66 83.3
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 6.9e-22 109.4 87 57.5
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 3.4e-21 107.1 87 57.5
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.2e-13 82.0 57 64.9
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 6.7e-09 66.2 59 59.3
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 1.9e-08 64.7 296 23.0
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 1.8e-06 58.2 58 43.1
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 4.0e-06 57.0 35 71.4


User provided reference genes

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