Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 1.5e-161 572.8 292 100.0
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 7.0e-98 361.3 293 70.3
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 1.6e-73 280.4 314 54.8
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 7.8e-65 251.5 321 51.4
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 7.8e-65 251.5 325 51.7
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 1.9e-63 246.9 314 52.2
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 1.2e-62 244.2 325 50.2
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 3.6e-62 242.7 324 51.9
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 4.7e-62 242.3 322 53.1
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 8.1e-62 241.5 327 50.5
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 8.1e-62 241.5 327 50.5
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 2.3e-61 240.0 324 51.5
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 3.1e-61 239.6 321 52.3
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 4.0e-61 239.2 314 48.1
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 2.6e-60 236.5 299 55.2
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 2.6e-60 236.5 314 49.0
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 4.4e-60 235.7 316 52.2
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 1.9e-58 230.3 321 49.8
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 3.2e-58 229.6 329 49.2
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 1.7e-56 223.8 329 49.8
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 3.9e-56 222.6 325 50.8
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 6.8e-53 211.8 289 49.1
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 2.9e-51 206.5 325 48.0
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 1.1e-50 204.5 319 48.3
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 1.3e-48 197.6 259 52.9
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 3.0e-48 196.4 319 44.5
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 1.9e-47 193.7 329 45.3
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 3.3e-47 193.0 319 45.8
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 4.3e-47 192.6 324 44.1
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 2.8e-46 189.9 319 44.8
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 6.2e-46 188.7 325 46.2
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 2.4e-45 186.8 326 44.8
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 2.4e-45 186.8 254 51.6
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 2.4e-45 186.8 248 50.4
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 4.0e-45 186.0 304 46.4
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 2.6e-44 183.3 322 44.7
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 9.9e-44 181.4 329 42.2
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 1.7e-43 180.6 329 42.6
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 2.9e-43 179.9 327 44.0
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 6.4e-43 178.7 329 42.2
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 6.4e-43 178.7 329 43.8
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 1.1e-42 177.9 273 49.5
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 1.4e-42 177.6 329 41.9
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 2.4e-42 176.8 329 43.5
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 2.4e-42 176.8 332 42.8
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 3.2e-42 176.4 311 46.0
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 5.4e-42 175.6 321 43.9
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 1.2e-41 174.5 246 48.8
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.2e-41 174.5 320 45.6
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 1.6e-41 174.1 360 43.1
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.6e-41 174.1 315 43.5
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 1.6e-41 174.1 319 42.6
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 1.6e-41 174.1 295 45.8
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 3.5e-41 172.9 310 43.2
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 4.6e-41 172.6 297 45.8
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.0e-40 171.4 299 46.2
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 1.3e-40 171.0 310 42.9
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 3.0e-40 169.9 320 45.0
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 3.9e-40 169.5 323 42.1
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 2.5e-39 166.8 277 45.5
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 5.6e-39 165.6 297 44.1
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 5.6e-39 165.6 270 49.3
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 1.6e-38 164.1 331 40.5
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 2.1e-38 163.7 284 45.8
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 2.1e-38 163.7 337 39.5
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 3.6e-38 162.9 297 43.8
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 8.1e-38 161.8 313 40.9
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 3.1e-37 159.8 342 38.6
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 4.0e-37 159.5 291 47.1
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 4.0e-37 159.5 279 43.4
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 5.3e-37 159.1 326 42.6
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 6.9e-37 158.7 353 38.0
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 1.5e-36 157.5 321 41.4
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 2.0e-36 157.1 235 48.1
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 2.6e-36 156.8 261 46.4
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 2.6e-36 156.8 333 39.0
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 5.8e-36 155.6 330 38.5
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 7.6e-36 155.2 291 43.6
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 9.9e-36 154.8 304 41.4
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 9.9e-36 154.8 327 39.1
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 6.4e-35 152.1 330 38.8
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 4.2e-34 149.4 352 38.6
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 7.1e-34 148.7 259 43.2
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.1e-33 147.1 325 36.6
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 4.6e-33 146.0 243 49.4
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 1.0e-32 144.8 221 49.3
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 1.3e-32 144.4 237 45.1
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 1.3e-32 144.4 282 44.0
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 5.1e-32 142.5 321 37.4
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 1.5e-31 141.0 289 41.5
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 1.9e-31 140.6 323 38.4
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 2.5e-31 140.2 321 36.8
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.8e-29 134.0 154 56.5
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 4.0e-29 132.9 274 42.3
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 6.9e-29 132.1 344 35.2
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 9.0e-29 131.7 286 38.8
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 9.9e-28 128.3 239 40.2
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 9.9e-28 128.3 239 40.2
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 9.9e-28 128.3 138 59.4
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 8.4e-27 125.2 329 35.9
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 1.1e-26 124.8 245 41.6
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 1.9e-26 124.0 298 37.6
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 3.2e-26 123.2 269 35.3
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 5.5e-26 122.5 239 38.9
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 7.1e-26 122.1 219 43.4
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 1.2e-25 121.3 305 35.1
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 1.2e-25 121.3 239 38.9
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 2.1e-25 120.6 216 43.5
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 2.1e-25 120.6 312 34.3
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 2.7e-25 120.2 251 38.6
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 6.0e-25 119.0 322 34.2
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 6.0e-25 119.0 278 37.1
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 7.9e-25 118.6 307 35.2
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 7.9e-25 118.6 300 35.0
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 1.3e-24 117.9 328 34.8
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 1.3e-24 117.9 302 35.4
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 1.3e-24 117.9 233 42.1
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 1.3e-24 117.9 246 39.8
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 3.9e-24 116.3 261 37.5
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 5.1e-24 115.9 279 39.1
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 8.7e-24 115.2 309 34.6
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 8.7e-24 115.2 235 40.4
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 2.5e-23 113.6 237 37.6
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 2.5e-23 113.6 128 53.9
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 3.3e-23 113.2 285 39.6
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 1.3e-22 111.3 308 34.7
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 2.1e-22 110.5 268 35.8
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 2.1e-22 110.5 221 40.3
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 3.7e-22 109.8 225 43.1
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 1.8e-21 107.5 299 34.4
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 6.9e-21 105.5 245 36.3
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 1.5e-20 104.4 283 34.3
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 5.8e-20 102.4 272 35.7
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 7.6e-20 102.1 136 48.5
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 1.0e-19 101.7 243 37.9
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 1.0e-19 101.7 246 35.8
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 1.0e-19 101.7 243 37.9
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 1.3e-19 101.3 247 35.6
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 1.7e-19 100.9 305 32.8
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 3.8e-19 99.8 297 33.0
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 8.4e-19 98.6 269 36.1
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 1.4e-18 97.8 259 36.7
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 2.5e-18 97.1 320 33.1
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 4.2e-18 96.3 286 31.8
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 9.3e-18 95.1 299 33.4
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 1.2e-17 94.7 293 34.1
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 2.3e-16 90.5 191 39.8
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 3.9e-16 89.7 234 39.7
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 3.3e-15 86.7 242 35.5
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 3.7e-14 83.2 257 32.7
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 4.8e-14 82.8 257 31.5
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 1.4e-13 81.3 253 32.4
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 1.8e-13 80.9 151 38.4
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 1.8e-13 80.9 117 47.9
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 3.1e-13 80.1 85 56.5
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 4.1e-13 79.7 190 37.4
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 1.5e-12 77.8 240 35.0
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 2.6e-12 77.0 184 38.6
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 3.4e-12 76.6 254 31.9
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 3.8e-11 73.2 114 45.6
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 4.2e-10 69.7 160 38.1


User provided reference genes

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