Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 1.4e-225 786.2 453 100.0
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 8.3e-207 723.8 453 92.3
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 9.7e-131 471.1 442 60.6
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 4.5e-128 462.2 448 60.3
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 1.4e-126 457.2 459 56.9
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 1.0e-124 451.1 450 57.8
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 5.3e-121 438.7 477 53.7
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 8.8e-116 421.4 450 54.7
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 7.2e-110 401.7 435 53.8
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 1.4e-108 397.5 446 52.9
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 4.5e-104 382.5 450 50.7
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 5.5e-102 375.6 435 51.5
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 7.2e-102 375.2 440 49.8
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 1.2e-101 374.4 419 50.1
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 2.3e-100 370.2 443 49.2
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 3.0e-100 369.8 445 49.4
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 8.9e-100 368.2 434 47.0
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 1.5e-99 367.5 438 47.9
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 2.2e-98 363.6 439 48.1
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 1.1e-97 361.3 444 47.1
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 1.1e-97 361.3 434 48.4
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 5.4e-97 359.0 442 48.9
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.7e-96 356.7 436 48.9
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 2.9e-95 353.2 440 47.7
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 1.5e-94 350.9 440 47.7
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 6.1e-93 345.5 449 47.0
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 8.0e-93 345.1 445 46.3
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 5.2e-92 342.4 540 42.2
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 6.8e-92 342.0 426 45.8
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 8.9e-92 341.7 376 52.9
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 3.4e-91 339.7 476 44.3
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 7.5e-91 338.6 428 45.1
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 2.2e-90 337.0 435 45.7
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 2.9e-90 336.7 440 45.7
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 1.1e-89 334.7 435 48.0
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 1.4e-89 334.3 448 43.8
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 2.4e-89 333.6 436 46.8
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 9.2e-89 331.6 434 46.5
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 1.2e-88 331.3 439 42.8
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 2.0e-88 330.5 441 46.0
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 3.5e-88 329.7 439 43.5
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 4.6e-88 329.3 434 44.9
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 1.7e-87 327.4 433 45.5
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 8.6e-87 325.1 427 44.5
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 7.3e-86 322.0 435 44.6
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 1.1e-84 318.2 456 41.7
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 1.2e-83 314.7 441 42.6
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 2.0e-83 313.9 435 43.7
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 2.0e-83 313.9 434 44.0
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 5.8e-83 312.4 434 42.9
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 7.5e-83 312.0 395 46.8
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 2.2e-82 310.5 448 42.2
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 3.7e-82 309.7 371 48.5
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 3.7e-82 309.7 440 41.1
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 1.1e-81 308.1 434 42.9
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 3.2e-81 306.6 434 41.2
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 7.0e-81 305.4 439 41.7
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 9.2e-81 305.1 439 41.2
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 1.2e-80 304.7 439 42.8
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 4.6e-80 302.8 448 42.2
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 6.0e-80 302.4 444 44.4
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 7.8e-80 302.0 456 40.6
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.0e-79 301.6 439 41.5
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 1.0e-79 301.6 439 42.8
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.3e-79 301.2 435 44.4
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 1.3e-79 301.2 485 42.5
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 2.3e-79 300.4 435 48.5
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 5.6e-78 295.8 450 41.6
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 7.3e-78 295.4 443 41.5
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 7.3e-78 295.4 443 40.6
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 9.5e-78 295.0 439 42.1
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 1.2e-77 294.7 457 40.9
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 1.2e-77 294.7 439 40.1
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 8.1e-77 292.0 457 40.9
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 8.1e-77 292.0 457 40.9
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 8.1e-77 292.0 371 46.1
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 1.1e-76 291.6 438 44.7
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 6.8e-76 288.9 435 40.5
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 8.9e-76 288.5 446 41.7
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 8.9e-76 288.5 423 44.2
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 1.2e-75 288.1 439 40.3
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 3.4e-75 286.6 354 46.6
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 5.8e-75 285.8 434 43.3
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 2.9e-74 283.5 417 46.3
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 4.9e-74 282.7 461 38.4
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 9.2e-73 278.5 435 39.1
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 1.6e-72 277.7 594 35.0
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 6.0e-72 275.8 466 37.6
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 6.6e-71 272.3 499 37.5
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 8.6e-71 271.9 434 38.2
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 8.6e-71 271.9 435 46.4
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 1.9e-70 270.8 441 39.0
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 4.3e-70 269.6 435 39.1
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 1.2e-69 268.1 443 41.8
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 2.1e-69 267.3 286 51.4
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 3.1e-68 263.5 431 39.7
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 3.1e-68 263.5 443 38.6
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 8.9e-68 261.9 417 46.5
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.2e-67 261.5 332 46.1
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 1.0e-63 248.4 387 40.3
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 1.0e-63 248.4 450 38.2
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 2.5e-62 243.8 305 47.2
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 1.1e-60 238.4 466 36.3
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 5.3e-60 236.1 439 37.8
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 1.3e-58 231.5 349 41.8
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 1.3e-58 231.5 454 36.1
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 3.2e-57 226.9 331 42.0
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 7.1e-57 225.7 435 34.3
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 5.1e-55 219.5 612 29.7
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 9.6e-54 215.3 440 35.2
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 2.6e-51 207.2 249 43.0
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 7.6e-51 205.7 447 35.3
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 4.9e-50 203.0 406 36.0
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 1.1e-49 201.8 442 33.5
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 1.5e-46 191.4 353 39.1
Os03g0577100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 4.3e-46 189.9 449 31.4
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 8.1e-45 185.7 299 40.8
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 2.6e-43 180.6 445 31.2
MELO3C002916.2 Cucumis melo HOM05D004546 ORTHO05D005419 5.8e-43 179.5 221 51.1
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 1.4e-41 174.9 449 29.8
arahy.Tifrunner.gnm1.ann1.MTQ0B2 Arachis hypogaea HOM05D004546 ORTHO05D005419 7.1e-41 172.6 113 84.1
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 1.3e-39 168.3 215 53.5
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 1.3e-37 161.8 222 42.8
Oeu027800.1 Olea europaea HOM05D004546 ORTHO05D005419 2.1e-37 161.0 181 51.9
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 8.2e-37 159.1 208 45.2
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 1.3e-34 151.8 232 38.4
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 5.5e-33 146.4 414 31.4
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 1.0e-31 142.1 159 48.4
FAN10G1533 Fragaria x ananassa HOM05D004546 ORTHO05D005419 6.9e-28 129.4 426 29.1
C05p50930 Brassica napus HOM05D004546 ORTHO05D005419 9.0e-28 129.0 208 38.0
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 1.1e-25 122.1 343 28.0
Zm00001eb064460 Zea mays HOM05D004546 ORTHO05D005419 3.2e-25 120.6 422 29.4
Atru.chr4.610 Acer truncatum HOM05D004546 ORTHO05D005419 1.3e-21 108.6 133 43.6
SEGI_32079 Sequoiadendron giganteum HOM05D004546 ORTHO05D005419 8.2e-21 105.9 431 24.8
C05p50920 Brassica napus HOM05D004546 ORTHO05D005419 1.5e-19 101.7 153 41.8
Hund15500 Selenicereus undatus HOM05D004546 ORTHO05D005419 1.5e-19 101.7 137 46.0
MD08G1232500 Malus domestica HOM05D004546 ORTHO05D005419 5.9e-19 99.8 98 45.9
TPR.G37996 Trifolium pratense HOM05D004546 ORTHO05D005419 7.7e-19 99.4 179 38.5
CAN.G1882.2 Capsicum annuum HOM05D004546 ORTHO05D005419 2.9e-18 97.4 115 50.4
PSO210G1504 Papaver somniferum HOM05D004546 ORTHO05D005419 2.5e-17 94.4 150 42.7
Aqoxy7G01614 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 3.3e-14 84.0 391 26.3
Rhsim09G0049000 Rhododendron simsii HOM05D004546 ORTHO05D005419 8.2e-13 79.3 104 38.5
RhsimUnG0234900 Rhododendron simsii HOM05D004546 ORTHO05D005419 7.0e-12 76.3 103 35.9
Mapoly0004s0096 Marchantia polymorpha HOM05D004546 ORTHO05D005419 1.5e-09 68.6 204 25.0
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 2.5e-09 67.8 91 39.6
Rhsim09G0048500 Rhododendron simsii HOM05D004546 ORTHO05D005419 5.5e-09 66.6 396 24.5
TPR.G18400 Trifolium pratense HOM05D004546 ORTHO05D005419 2.1e-08 64.7 42 81.0
CAN.G1882.3 Capsicum annuum HOM05D004546 ORTHO05D005419 2.3e-07 61.2 82 45.1
TPR.G7268 Trifolium pratense HOM05D004546 ORTHO05D005419 6.7e-07 59.7 72 51.4


User provided reference genes

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