Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SAF13J Arachis hypogaea HOM05D006163 ORTHO05D007625 3.4e-183 644.8 313 100.0
arahy.Tifrunner.gnm1.ann1.8Q7Z1Z Arachis hypogaea HOM05D006163 ORTHO05D007625 6.1e-116 421.4 221 95.0
arahy.Tifrunner.gnm1.ann1.D5BHID Arachis hypogaea HOM05D006163 ORTHO05D007625 8.8e-115 417.5 218 95.4
arahy.Tifrunner.gnm1.ann1.A5X75G Arachis hypogaea HOM05D006163 ORTHO05D007625 8.5e-110 401.0 221 91.4
arahy.Tifrunner.gnm1.ann1.HM2X2W Arachis hypogaea HOM05D006163 ORTHO05D007625 7.7e-103 377.9 226 88.1
Ca_18951_v3 Cicer arietinum L. HOM05D006163 ORTHO05D007625 4.1e-96 355.5 223 79.4
arahy.Tifrunner.gnm1.ann1.14ZLQ3 Arachis hypogaea HOM05D006163 ORTHO05D007625 9.1e-96 354.4 186 94.1
Psat7g170000 Pisum sativum HOM05D006163 ORTHO05D007625 1.2e-95 354.0 223 79.4
Lalb_Chr19g0140021 Lupinus albus HOM05D006163 ORTHO05D007625 5.9e-95 351.7 222 77.9
Glyma.12G016500 Glycine max HOM05D006163 ORTHO05D007625 1.1e-93 347.4 222 79.3
Glyma.11G108900 Glycine max HOM05D006163 ORTHO05D007625 1.5e-93 347.1 222 78.8
VMungo1127G1084 Vigna mungo HOM05D006163 ORTHO05D007625 3.3e-93 345.9 221 77.4
Phvul.011G018700 Phaseolus vulgaris HOM05D006163 ORTHO05D007625 4.2e-93 345.5 219 77.2
Medtr4g078150 Medicago truncatula HOM05D006163 ORTHO05D007625 2.1e-92 343.2 216 78.7
RcHm_v2.0_Chr1g0384531 Rosa chinensis HOM05D006163 ORTHO05D007625 8.0e-92 341.3 221 75.1
COL.COLO4_15169 Corchorus olitorius HOM05D006163 ORTHO05D007625 1.4e-91 340.5 223 72.6
Haze_00381 Corylus avellana HOM05D006163 ORTHO05D007625 3.0e-91 339.3 219 74.0
FvH4_7g34180 Fragaria vesca HOM05D006163 ORTHO05D007625 6.8e-91 338.2 221 74.2
FAN01G0917 Fragaria x ananassa HOM05D006163 ORTHO05D007625 6.8e-91 338.2 221 74.2
Potri.013G078600 Populus trichocarpa HOM05D006163 ORTHO05D007625 1.2e-90 337.4 220 74.5
Prupe.2G328500 Prunus persica HOM05D006163 ORTHO05D007625 1.2e-90 337.4 221 73.3
Lj3g0017647 Lotus japonicus HOM05D006163 ORTHO05D007625 1.5e-90 337.0 210 80.5
TPR.G28026 Trifolium pratense HOM05D006163 ORTHO05D007625 1.5e-90 337.0 216 77.3
FAN03G2098 Fragaria x ananassa HOM05D006163 ORTHO05D007625 2.0e-90 336.7 221 73.8
CiPaw.05G214500 Carya illinoinensis HOM05D006163 ORTHO05D007625 3.4e-90 335.9 221 73.8
Atru.chr12.1903 Acer truncatum HOM05D006163 ORTHO05D007625 4.4e-90 335.5 223 71.3
Atru.chr12.1911 Acer truncatum HOM05D006163 ORTHO05D007625 4.4e-90 335.5 223 71.3
Cfa016068 Carpinus fangiana HOM05D006163 ORTHO05D007625 4.4e-90 335.5 222 72.5
Gohir.D03G053900 Gossypium hirsutum HOM05D006163 ORTHO05D007625 4.4e-90 335.5 225 70.2
TAR375G0677 Trochodendron aralioides HOM05D006163 ORTHO05D007625 4.4e-90 335.5 221 72.9
Gorai.003G056400 Gossypium raimondii HOM05D006163 ORTHO05D007625 7.5e-90 334.7 225 70.2
FAN10G0627 Fragaria x ananassa HOM05D006163 ORTHO05D007625 9.8e-90 334.3 221 73.3
Manes.09G128800 Manihot esculenta HOM05D006163 ORTHO05D007625 9.8e-90 334.3 223 74.0
Thecc.05G221400 Theobroma cacao HOM05D006163 ORTHO05D007625 3.7e-89 332.4 223 70.9
Duzib177G0052 Durio zibethinus HOM05D006163 ORTHO05D007625 4.9e-89 332.0 223 71.3
Ciclev10031395m.g Citrus clementina HOM05D006163 ORTHO05D007625 6.3e-89 331.6 223 70.9
MD07G1310500 Malus domestica HOM05D006163 ORTHO05D007625 6.3e-89 331.6 221 72.9
QL09p021166 Quercus lobata HOM05D006163 ORTHO05D007625 8.3e-89 331.3 217 74.2
GSVIVG01024341001 Vitis vinifera HOM05D006163 ORTHO05D007625 8.3e-89 331.3 223 73.1
THA.LOC104821716 Tarenaya hassleriana HOM05D006163 ORTHO05D007625 1.1e-88 330.9 223 69.5
TAR636G3625 Trochodendron aralioides HOM05D006163 ORTHO05D007625 1.8e-88 330.1 223 72.2
Gohir.A02G127100 Gossypium hirsutum HOM05D006163 ORTHO05D007625 2.4e-88 329.7 225 69.8
PGSC0003DMG400026470 Solanum tuberosum HOM05D006163 ORTHO05D007625 3.1e-88 329.3 223 70.4
Duzib128G1201 Durio zibethinus HOM05D006163 ORTHO05D007625 4.1e-88 328.9 221 70.1
CSS0011721 Camellia sinensis var. sinensis HOM05D006163 ORTHO05D007625 7.0e-88 328.2 223 71.3
CSS0040571 Camellia sinensis var. sinensis HOM05D006163 ORTHO05D007625 7.0e-88 328.2 223 71.3
PSO782G2449 Papaver somniferum HOM05D006163 ORTHO05D007625 2.0e-87 326.6 221 72.4
Peaxi162Scf00516g00670 Petunia axillaris HOM05D006163 ORTHO05D007625 3.5e-87 325.9 220 70.5
Nitab4.5_0000021g0780 Nicotiana tabacum HOM05D006163 ORTHO05D007625 4.5e-87 325.5 223 69.5
CAN.G1131.33 Capsicum annuum HOM05D006163 ORTHO05D007625 5.9e-87 325.1 221 71.0
Nitab4.5_0004530g0040 Nicotiana tabacum HOM05D006163 ORTHO05D007625 7.8e-87 324.7 223 69.5
Rhsim03G0223500 Rhododendron simsii HOM05D006163 ORTHO05D007625 1.7e-86 323.6 223 70.4
Actinidia08761 Actinidia chinensis HOM05D006163 ORTHO05D007625 2.3e-86 323.2 223 70.4
AUR62002085 Chenopodium quinoa HOM05D006163 ORTHO05D007625 3.8e-86 322.4 204 74.0
Nn1g00138 Nelumbo nucifera HOM05D006163 ORTHO05D007625 5.0e-86 322.0 221 70.1
THA.LOC104823799 Tarenaya hassleriana HOM05D006163 ORTHO05D007625 5.0e-86 322.0 223 67.3
CANSAT21G1837 Cannabis sativa HOM05D006163 ORTHO05D007625 6.6e-86 321.6 227 68.7
PSO063G3404 Papaver somniferum HOM05D006163 ORTHO05D007625 8.6e-86 321.2 221 71.0
PGR042G2551 Punica granatum HOM05D006163 ORTHO05D007625 1.1e-85 320.9 221 67.4
TWI34G1340 Tripterygium wilfordii HOM05D006163 ORTHO05D007625 1.1e-85 320.9 223 69.1
Actinidia34326 Actinidia chinensis HOM05D006163 ORTHO05D007625 1.5e-85 320.5 223 69.5
AUR62028203 Chenopodium quinoa HOM05D006163 ORTHO05D007625 1.5e-85 320.5 200 75.0
A03p57370 Brassica napus HOM05D006163 ORTHO05D007625 1.9e-85 320.1 214 69.2
BraA03t14803Z Brassica rapa HOM05D006163 ORTHO05D007625 1.9e-85 320.1 214 69.2
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 3.3e-85 319.3 214 69.2
C07p55580 Brassica napus HOM05D006163 ORTHO05D007625 3.3e-85 319.3 214 69.2
BolC7t46037H Brassica oleracea HOM05D006163 ORTHO05D007625 3.3e-85 319.3 214 69.2
Eucgr.A02987 Eucalyptus grandis HOM05D006163 ORTHO05D007625 5.6e-85 318.5 223 66.8
CsaV3_3G050100 Cucumis sativus L. HOM05D006163 ORTHO05D007625 9.5e-85 317.8 217 68.7
MBI04_g22924_MAGBIO Magnolia biondii HOM05D006163 ORTHO05D007625 9.5e-85 317.8 223 69.1
Sed0018021 Sechium edule HOM05D006163 ORTHO05D007625 2.1e-84 316.6 217 68.2
MELO3C003308.2 Cucumis melo HOM05D006163 ORTHO05D007625 2.8e-84 316.2 217 68.2
Solyc03g097210.3 Solanum lycopersicum HOM05D006163 ORTHO05D007625 4.7e-84 315.5 204 71.6
ClCG09G013140 Citrullus lanatus HOM05D006163 ORTHO05D007625 8.0e-84 314.7 217 66.8
Sopen03g027970 Solanum pennellii HOM05D006163 ORTHO05D007625 8.0e-84 314.7 204 71.6
Thhalv10025109m.g Eutrema salsugineum HOM05D006163 ORTHO05D007625 1.4e-83 313.9 216 68.5
AL7G25120 Arabidopsis lyrata HOM05D006163 ORTHO05D007625 1.8e-83 313.5 215 68.8
AT4G27600 Arabidopsis thaliana HOM05D006163 ORTHO05D007625 1.8e-83 313.5 215 68.8
BcaNung01655 Brassica carinata HOM05D006163 ORTHO05D007625 1.8e-83 313.5 216 68.5
CARHR235300 Cardamine hirsuta HOM05D006163 ORTHO05D007625 1.8e-83 313.5 216 67.6
Migut.H00007 Erythranthe guttata HOM05D006163 ORTHO05D007625 1.8e-83 313.5 224 66.5
Lj3A885T47 Lonicera japonica HOM05D006163 ORTHO05D007625 1.8e-83 313.5 221 68.3
CANSAT35G0373 Cannabis sativa HOM05D006163 ORTHO05D007625 2.3e-83 313.2 229 66.8
A01p18840 Brassica napus HOM05D006163 ORTHO05D007625 3.1e-83 312.8 216 68.5
BraA01t01827Z Brassica rapa HOM05D006163 ORTHO05D007625 3.1e-83 312.8 216 68.5
Carub.0007s1325 Capsella rubella HOM05D006163 ORTHO05D007625 3.1e-83 312.8 215 68.4
Aa31LG9G8200 Aethionema arabicum HOM05D006163 ORTHO05D007625 5.2e-83 312.0 223 65.5
Nn6g33561 Nelumbo nucifera HOM05D006163 ORTHO05D007625 5.2e-83 312.0 221 67.0
MSTRG.8568 Avicennia marina HOM05D006163 ORTHO05D007625 6.8e-83 311.6 223 67.3
Sed0010720 Sechium edule HOM05D006163 ORTHO05D007625 6.8e-83 311.6 217 67.3
Hund09806 Selenicereus undatus HOM05D006163 ORTHO05D007625 6.8e-83 311.6 204 71.6
BcaC09g50576 Brassica carinata HOM05D006163 ORTHO05D007625 1.5e-82 310.5 216 68.1
Ah.13g072360 Amaranthus hybridus HOM05D006163 ORTHO05D007625 3.4e-82 309.3 200 73.5
Sp7g25550 Schrenkiella parvula HOM05D006163 ORTHO05D007625 5.8e-82 308.5 216 67.6
Sc13g0010940 Simmondsia chinensis HOM05D006163 ORTHO05D007625 1.3e-81 307.4 204 72.1
HanXRQChr17g0560551 Helianthus annuus HOM05D006163 ORTHO05D007625 1.7e-81 307.0 223 65.9
Cpa.g.c31592 Carica papaya HOM05D006163 ORTHO05D007625 2.2e-81 306.6 206 69.9
ECA233G4936 Erigeron canadensis HOM05D006163 ORTHO05D007625 2.2e-81 306.6 223 65.5
Hma1.2p1_0649F.1_g195200 Hydrangea macrophylla HOM05D006163 ORTHO05D007625 6.4e-81 305.1 221 67.9
Aqoxy3G02310 Aquilegia oxysepala HOM05D006163 ORTHO05D007625 3.2e-80 302.8 212 68.9
DCAR_010527 Daucus carota HOM05D006163 ORTHO05D007625 3.2e-80 302.8 205 69.3
vmacro06384 Vaccinium macrocarpon HOM05D006163 ORTHO05D007625 1.2e-79 300.8 253 60.9
SGA_v2.0_scaffold34G13939 Striga asiatica HOM05D006163 ORTHO05D007625 2.0e-79 300.1 207 68.1
Cc02_g00150 Coffea canephora HOM05D006163 ORTHO05D007625 2.7e-79 299.7 208 68.8
Os10g0573000 Oryza sativa ssp. japonica HOM05D006163 ORTHO05D007625 2.8e-76 289.7 221 62.9
SGA_v2.0_scaffold70G23507 Striga asiatica HOM05D006163 ORTHO05D007625 4.7e-76 288.9 207 65.7
Lsat_1_v5_gn_8_142440 Lactuca sativa HOM05D006163 ORTHO05D007625 1.2e-74 284.3 221 62.9
HPP92_002586 Vanilla planifolia HOM05D006163 ORTHO05D007625 1.7e-73 280.4 220 62.7
unitig_747.g21710 Utricularia gibba HOM05D006163 ORTHO05D007625 3.7e-73 279.3 213 64.8
Dinv29134 Davidia involucrata HOM05D006163 ORTHO05D007625 6.4e-73 278.5 186 69.9
ATR0057G079 Amborella trichopoda HOM05D006163 ORTHO05D007625 6.0e-71 271.9 218 60.1
Zm00001eb024550 Zea mays HOM05D006163 ORTHO05D007625 1.0e-70 271.2 208 63.5
SEGI_27900 Sequoiadendron giganteum HOM05D006163 ORTHO05D007625 1.2e-66 257.7 223 56.5
Pp3c17_23450 Physcomitrium patens HOM05D006163 ORTHO05D007625 3.2e-64 249.6 196 59.2
AagrBONN_evm.TU.Sc2ySwM_344.936 Anthoceros agrestis HOM05D006163 ORTHO05D007625 4.6e-63 245.7 198 59.1
Pp3c2_520 Physcomitrium patens HOM05D006163 ORTHO05D007625 1.0e-62 244.6 196 59.2
EL10Ac3g05052 Beta vulgaris HOM05D006163 ORTHO05D007625 9.5e-61 238.0 204 58.8
Mapoly0014s0025 Marchantia polymorpha HOM05D006163 ORTHO05D007625 9.5e-61 238.0 196 57.7
Pp3c14_24300 Physcomitrium patens HOM05D006163 ORTHO05D007625 2.1e-60 236.9 196 56.6
SMO139G0077 Selaginella moellendorffii HOM05D006163 ORTHO05D007625 7.6e-58 228.4 202 54.5
C01p23770 Brassica napus HOM05D006163 ORTHO05D007625 1.9e-37 160.6 106 68.9
BolC1t02328H Brassica oleracea HOM05D006163 ORTHO05D007625 9.6e-37 158.3 106 67.9
CDE11G0223 Ceratophyllum demersum HOM05D006163 ORTHO05D007625 7.9e-31 138.7 91 67.0
THA.LOC104824563 Tarenaya hassleriana HOM05D002657 ORTHO05D003059 7.4e-29 132.1 103 59.2
Cre03.g185850 Chlamydomonas reinhardtii HOM05D006163 ORTHO05D007625 3.5e-23 113.2 227 30.4
BcaB03g12539 Brassica carinata HOM05D006163 ORTHO05D007625 1.8e-22 110.9 72 72.2
Mapoly0012s0094 Marchantia polymorpha HOM05D004293 ORTHO05D005044 4.1e-11 73.2 144 31.2
FvH4_2g39580 Fragaria vesca HOM05D004293 ORTHO05D005044 2.7e-07 60.5 143 30.1
FAN27G1442 Fragaria x ananassa HOM05D004293 ORTHO05D005044 4.7e-07 59.7 155 28.4
FAN20G0470 Fragaria x ananassa HOM05D004293 ORTHO05D005044 6.1e-07 59.3 155 28.4
TWI36G0587 Tripterygium wilfordii HOM05D004293 ORTHO05D005044 6.1e-07 59.3 155 27.1
ATR0568G055 Amborella trichopoda HOM05D004293 ORTHO05D005044 1.4e-06 58.2 159 25.8
ECA246G0240 Erigeron canadensis HOM05D004293 ORTHO05D005044 1.4e-06 58.2 126 27.8
Lsat_1_v5_gn_5_27761 Lactuca sativa HOM05D004293 ORTHO05D005044 1.4e-06 58.2 131 28.2
arahy.Tifrunner.gnm1.ann1.D196G9 Arachis hypogaea HOM05D004293 ORTHO05D005044 1.8e-06 57.8 131 26.0
arahy.Tifrunner.gnm1.ann1.KUDP7J Arachis hypogaea HOM05D004293 ORTHO05D005044 1.8e-06 57.8 131 26.0
COL.COLO4_26281 Corchorus olitorius HOM05D004293 ORTHO05D005044 2.3e-06 57.4 164 25.6
Pp3c18_21330 Physcomitrium patens HOM05D004293 ORTHO05D005044 2.3e-06 57.4 144 26.4
Pp3c21_3850 Physcomitrium patens HOM05D004293 ORTHO05D005044 2.3e-06 57.4 144 26.4
arahy.Tifrunner.gnm1.ann1.0FN7J8 Arachis hypogaea HOM05D004293 ORTHO05D005044 3.0e-06 57.0 131 28.2
arahy.Tifrunner.gnm1.ann1.5L5Q4S Arachis hypogaea HOM05D004293 ORTHO05D005044 3.0e-06 57.0 131 28.2
Gohir.D05G260400 Gossypium hirsutum HOM05D004293 ORTHO05D005044 3.0e-06 57.0 164 28.0
Gorai.009G272300 Gossypium raimondii HOM05D004293 ORTHO05D005044 3.0e-06 57.0 164 28.0
CDE02G3095 Ceratophyllum demersum HOM05D004293 ORTHO05D005044 3.9e-06 56.6 137 29.2
DCAR_013830 Daucus carota HOM05D004293 ORTHO05D005044 3.9e-06 56.6 131 27.5
Oeu002826.1 Olea europaea HOM05D004293 ORTHO05D005044 3.9e-06 56.6 160 25.6
Sopen04g034170 Solanum pennellii HOM05D004293 ORTHO05D005044 5.1e-06 56.2 131 27.5
AL1G32320 Arabidopsis lyrata HOM05D004293 ORTHO05D005044 6.7e-06 55.8 131 26.7
Lj5g0013851 Lotus japonicus HOM05D004293 ORTHO05D005044 6.7e-06 55.8 137 29.2
Solyc04g080580.3 Solanum lycopersicum HOM05D004293 ORTHO05D005044 6.7e-06 55.8 131 27.5
FAN15G0341 Fragaria x ananassa HOM05D004293 ORTHO05D005044 8.8e-06 55.5 157 29.3
Gohir.A05G258700 Gossypium hirsutum HOM05D004293 ORTHO05D005044 8.8e-06 55.5 164 27.4


User provided reference genes

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