Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.SA9RL2 Arachis hypogaea HOM05D007837 ORTHO05D009965 5.6e-220 767.3 386 100.0
arahy.Tifrunner.gnm1.ann1.FUT705 Arachis hypogaea HOM05D007837 ORTHO05D009965 5.2e-149 531.6 309 88.7
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 4.4e-140 501.9 420 66.0
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 7.0e-138 494.6 424 63.4
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 4.8e-131 471.9 385 66.2
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 4.2e-127 458.8 419 60.6
Atru.chr10.652 Acer truncatum HOM05D007837 ORTHO05D009965 3.3e-111 406.0 438 51.6
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 1.1e-109 401.0 425 53.6
COL.COLO4_22875 Corchorus olitorius HOM05D007837 ORTHO05D009965 1.8e-109 400.2 408 51.7
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 2.3e-109 399.8 420 52.4
Prupe.4G103700 Prunus persica HOM05D007837 ORTHO05D009965 3.1e-109 399.4 420 52.4
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 1.5e-108 397.1 425 51.1
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 3.4e-108 396.0 421 52.5
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 7.5e-108 394.8 423 52.0
MD10G1240200 Malus domestica HOM05D007837 ORTHO05D009965 1.7e-107 393.7 418 52.2
Lj1A1155T50 Lonicera japonica HOM05D007837 ORTHO05D009965 2.9e-107 392.9 419 52.0
CSS0012057 Camellia sinensis var. sinensis HOM05D007837 ORTHO05D009965 3.7e-107 392.5 420 51.9
MD05G1261900 Malus domestica HOM05D007837 ORTHO05D009965 3.7e-107 392.5 420 51.9
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 3.5e-105 386.0 430 51.4
Potri.011G153800 Populus trichocarpa HOM05D007837 ORTHO05D009965 4.6e-105 385.6 424 50.5
FAN21G3089 Fragaria x ananassa HOM05D007837 ORTHO05D009965 5.0e-104 382.1 425 50.6
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 6.6e-104 381.7 424 49.8
FAN25G3065 Fragaria x ananassa HOM05D007837 ORTHO05D009965 1.5e-103 380.6 422 50.9
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 2.5e-103 379.8 417 49.9
RcHm_v2.0_Chr5g0018641 Rosa chinensis HOM05D007837 ORTHO05D009965 3.3e-103 379.4 425 50.8
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 7.3e-103 378.3 429 49.2
FvH4_3g11620 Fragaria vesca HOM05D007837 ORTHO05D009965 9.5e-103 377.9 425 49.9
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 2.8e-102 376.3 417 49.4
Dinv15942 Davidia involucrata HOM05D007837 ORTHO05D009965 3.1e-101 372.9 394 54.1
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 3.1e-101 372.9 443 47.2
Cc09_g07320 Coffea canephora HOM05D007837 ORTHO05D009965 1.7e-99 367.1 419 48.2
Aqoxy3G03542 Aquilegia oxysepala HOM05D007837 ORTHO05D009965 2.2e-99 366.7 437 49.4
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 4.9e-99 365.5 414 48.3
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 1.1e-98 364.4 406 50.2
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 2.7e-97 359.8 421 49.4
FAN16G2143 Fragaria x ananassa HOM05D007837 ORTHO05D009965 1.5e-95 354.0 436 47.7
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 1.5e-95 354.0 422 49.1
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 3.3e-95 352.8 423 48.2
QL05p065337 Quercus lobata HOM05D007837 ORTHO05D009965 3.4e-92 342.8 420 46.7
Sed0012016 Sechium edule HOM05D007837 ORTHO05D009965 2.2e-91 340.1 421 47.0
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 4.6e-89 332.4 440 43.4
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 4.6e-89 332.4 440 43.4
TAR626G0822 Trochodendron aralioides HOM05D007837 ORTHO05D009965 5.2e-85 318.9 403 47.1
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 9.0e-85 318.2 252 65.5
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 6.4e-83 312.0 421 45.6
Medtr4g035250 Medicago truncatula HOM05D007837 ORTHO05D009965 3.2e-82 309.7 385 48.6
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 1.4e-77 294.3 290 53.4
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 6.9e-77 292.0 291 53.6
ATR1098G128 Amborella trichopoda HOM05D007837 ORTHO05D009965 2.0e-76 290.4 425 40.2
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 7.6e-76 288.5 482 39.0
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 8.4e-75 285.0 286 52.8
Nitab4.5_0011721g0030 Nicotiana tabacum HOM05D007837 ORTHO05D009965 7.9e-73 278.5 510 36.3
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 1.5e-71 274.2 299 48.8
MBI18_g28215_MAGBIO Magnolia biondii HOM05D007837 ORTHO05D009965 1.3e-70 271.2 406 40.9
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 1.2e-68 264.6 481 36.4
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 1.4e-66 257.7 566 32.3
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 2.4e-66 256.9 562 32.4
Potri.001G443025 Populus trichocarpa HOM05D007837 ORTHO05D009965 2.6e-60 236.9 248 50.8
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 1.4e-58 231.1 198 60.1
TPR.G1949 Trifolium pratense HOM05D007837 ORTHO05D009965 7.1e-58 228.8 185 66.5
Lsat_1_v5_gn_1_90680 Lactuca sativa HOM05D007837 ORTHO05D001664 6.0e-57 225.7 283 46.6
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 3.1e-53 213.4 395 36.2
TPR.G10794 Trifolium pratense HOM05D007837 ORTHO05D009965 4.4e-39 166.4 130 66.9
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 5.7e-39 166.0 405 29.9
Haze_05985 Corylus avellana HOM05D007837 ORTHO05D009965 9.7e-39 165.2 125 64.8
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 8.2e-38 162.2 302 33.8
Hma1.2p1_0410F.1_g147010 Hydrangea macrophylla HOM05D007837 ORTHO05D009965 8.8e-32 142.1 104 66.3
Glyma.03G069100 Glycine max HOM05D007837 ORTHO05D009965 4.4e-31 139.8 152 54.6
Medtr4g035220 Medicago truncatula HOM05D007837 ORTHO05D009965 3.7e-30 136.7 89 78.7
TAR633G0058 Trochodendron aralioides HOM05D007837 ORTHO05D009965 2.7e-25 120.6 143 47.6
SMO263G0007 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 4.8e-14 83.2 140 35.7
TAR365G1222 Trochodendron aralioides HOM05D001154 ORTHO05D010892 1.8e-13 81.3 63 60.3
TAR626G1098 Trochodendron aralioides HOM05D001154 ORTHO05D010892 3.1e-13 80.5 63 60.3
GSVIVG01037970001 Vitis vinifera HOM05D007837 ORTHO05D009965 1.6e-12 78.2 59 66.1
Sabra11G0145700 Salix brachista HOM05D007837 ORTHO05D009965 2.0e-12 77.8 113 38.1
Cpa.g.sc192.14 Carica papaya HOM05D007837 ORTHO05D009965 2.1e-09 67.8 60 56.7
Mapoly0020s0028 Marchantia polymorpha HOM05D007670 ORTHO05D009646 2.8e-09 67.4 199 24.6
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 4.0e-08 63.5 169 29.0
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 4.0e-08 63.5 169 29.0
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 4.0e-08 63.5 212 26.4
Oeu008971.1 Olea europaea HOM05D007837 ORTHO05D009965 2.6e-07 60.8 60 51.7
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 2.6e-07 60.8 224 25.0
TAR371G0483 Trochodendron aralioides HOM05D001154 ORTHO05D010892 4.4e-07 60.1 39 66.7
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 1.3e-06 58.5 169 27.8
TAR362G0005 Trochodendron aralioides HOM05D007837 ORTHO05D009965 1.3e-06 58.5 54 57.4
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 1.7e-06 58.2 197 26.9
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 2.2e-06 57.8 221 24.0
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 2.2e-06 57.8 221 28.1
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 3.7e-06 57.0 221 24.0
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 3.7e-06 57.0 221 24.0
FAN18G1020 Fragaria x ananassa HOM05D007670 ORTHO05D009646 3.7e-06 57.0 221 24.0
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 3.7e-06 57.0 165 30.3
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 4.9e-06 56.6 194 27.8
TAR086G0001 Trochodendron aralioides HOM05D007837 ORTHO05D009965 4.9e-06 56.6 33 72.7
FAN04G2873 Fragaria x ananassa HOM05D007670 ORTHO05D009646 6.3e-06 56.2 221 24.0
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 8.3e-06 55.8 180 26.7


User provided reference genes

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