Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.7e-288 995.3 509 100.0
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 9.8e-281 969.5 509 97.6
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 3.0e-274 948.0 510 95.5
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 4.1e-255 884.4 521 89.4
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 1.9e-215 752.7 480 78.8
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 2.6e-209 732.3 510 75.1
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 5.5e-207 724.5 490 77.3
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 3.3e-204 715.3 485 75.5
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 2.8e-203 712.2 485 75.5
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 7.6e-201 704.1 510 73.1
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 2.9e-200 702.2 510 73.1
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 8.8e-189 664.1 484 73.3
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 3.6e-182 642.1 513 65.5
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 2.0e-180 636.3 516 64.3
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 5.7e-180 634.8 516 64.9
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 1.3e-179 633.6 516 64.1
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.7e-179 633.3 516 64.1
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 2.4e-178 629.4 515 63.9
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 2.6e-177 625.9 491 66.6
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 4.7e-174 615.1 484 68.0
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 3.0e-173 612.5 519 63.2
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 5.2e-173 611.7 513 64.9
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 1.2e-172 610.5 438 70.5
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 3.3e-172 609.0 587 56.4
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 2.2e-171 606.3 493 64.3
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 3.7e-171 605.5 487 65.5
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 4.5e-169 598.6 511 63.0
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 5.9e-169 598.2 512 63.9
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 1.5e-167 593.6 512 61.5
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 1.9e-167 593.2 512 60.9
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 2.5e-167 592.8 511 62.6
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 1.2e-166 590.5 489 65.0
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 2.1e-166 589.7 473 63.2
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 6.1e-166 588.2 489 64.8
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 2.3e-165 586.3 513 60.6
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 1.2e-164 583.9 511 60.5
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 1.1e-162 577.4 499 59.1
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 3.1e-162 575.9 439 67.0
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 3.1e-162 575.9 492 63.6
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 1.3e-160 570.5 517 60.5
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 1.5e-159 567.0 472 62.5
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 2.5e-159 566.2 519 59.5
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 3.3e-159 565.8 495 59.2
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 4.2e-159 565.5 494 58.7
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 5.5e-159 565.1 497 58.6
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 7.2e-159 564.7 488 63.9
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 4.7e-158 562.0 495 59.0
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 1.4e-157 560.5 490 59.2
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 2.3e-157 559.7 512 60.7
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 1.2e-156 557.4 490 59.4
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 1.7e-155 553.5 490 61.6
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 2.2e-155 553.1 479 61.8
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 1.1e-154 550.8 509 60.3
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 1.4e-154 550.4 517 57.3
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 5.4e-154 548.5 478 58.8
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 9.2e-154 547.7 441 63.3
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 3.5e-153 545.8 491 59.1
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 5.9e-153 545.0 474 60.5
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 1.5e-151 540.4 410 66.3
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 1.5e-151 540.4 511 56.4
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 2.5e-151 539.7 491 58.0
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 3.3e-151 539.3 479 59.5
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 2.8e-150 536.2 494 57.5
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 2.8e-150 536.2 492 59.6
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 2.8e-150 536.2 492 59.6
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 4.4e-148 528.9 478 57.1
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 5.8e-148 528.5 457 58.6
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 1.3e-147 527.3 501 55.1
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 1.7e-147 526.9 508 58.3
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 2.2e-147 526.6 493 57.2
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 2.9e-147 526.2 485 57.5
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 6.4e-147 525.0 494 56.5
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 8.3e-147 524.6 512 56.8
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 1.1e-146 524.2 417 65.5
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 1.9e-146 523.5 460 61.7
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 9.2e-146 521.2 480 57.3
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 2.7e-145 519.6 413 63.0
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 3.5e-145 519.2 430 62.8
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 3.5e-145 519.2 431 63.8
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 6.0e-145 518.5 477 58.7
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 6.0e-145 518.5 426 65.3
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 2.3e-144 516.5 440 62.7
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 3.9e-144 515.8 471 57.3
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 1.1e-143 514.2 487 56.7
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 1.9e-143 513.5 481 56.3
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 4.3e-143 512.3 470 56.8
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 7.3e-143 511.5 515 53.8
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 7.3e-143 511.5 470 56.2
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 2.8e-142 509.6 520 55.4
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 6.2e-142 508.4 471 56.7
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 1.8e-141 506.9 436 60.1
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 2.0e-140 503.4 511 53.2
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 6.4e-139 498.4 413 63.4
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 9.2e-138 494.6 509 53.8
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 4.6e-137 492.3 440 60.0
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 2.3e-136 490.0 475 56.6
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 3.0e-136 489.6 487 55.4
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 3.0e-136 489.6 500 54.0
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 1.5e-135 487.3 489 53.6
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 2.5e-135 486.5 413 62.0
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 3.3e-135 486.1 487 53.8
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 7.3e-135 485.0 491 54.6
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 7.3e-135 485.0 427 60.0
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 1.6e-134 483.8 507 54.2
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 1.6e-134 483.8 450 58.4
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 4.4e-132 475.7 487 53.8
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 9.9e-132 474.6 495 51.9
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 2.2e-131 473.4 484 54.1
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 7.8e-129 464.9 461 53.8
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 6.8e-125 451.8 439 57.4
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 2.6e-124 449.9 423 57.2
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 5.8e-124 448.7 512 50.2
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 8.7e-120 434.9 400 57.0
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 5.4e-114 415.6 431 54.3
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 1.3e-112 411.0 394 57.6
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 1.1e-111 407.9 409 56.0
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 2.5e-111 406.8 313 62.6
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 1.4e-109 401.0 500 47.0
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 4.5e-108 396.0 476 48.5
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 2.3e-104 383.6 382 56.0
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 1.3e-102 377.9 301 63.8
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 1.3e-99 367.9 337 57.0
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 1.8e-96 357.5 479 48.9
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 2.8e-94 350.1 518 41.7
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 3.7e-94 349.7 444 44.4
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 1.2e-92 344.7 366 55.2
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 1.3e-91 341.3 298 59.4
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 3.9e-88 329.7 481 43.0
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 2.6e-76 290.4 293 51.9
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 4.5e-76 289.7 215 67.0
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 2.9e-75 287.0 249 55.8
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 5.0e-75 286.2 321 48.3
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 2.6e-68 263.8 491 34.6
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 2.2e-67 260.8 189 67.7
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 2.3e-64 250.8 305 48.9
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 2.6e-63 247.3 227 61.7
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 2.2e-54 217.6 126 81.7
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 3.6e-49 200.3 181 58.0
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 4.9e-38 163.3 298 34.6
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 2.7e-36 157.5 442 29.4
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 7.3e-34 149.4 122 62.3
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 2.6e-31 141.0 203 39.9
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 2.5e-26 124.4 93 62.4
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 4.3e-26 123.6 83 69.9
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 2.0e-23 114.8 80 65.0
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 3.3e-18 97.4 67 68.7
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 4.7e-17 93.6 63 69.8
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 2.3e-16 91.3 63 68.3
MBI15_g38533_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 4.0e-16 90.5 129 42.6
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 1.1e-13 82.4 167 35.9
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 1.7e-11 75.1 57 66.7
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 1.1e-10 72.4 46 69.6
PRCOL_00002815 Prasinoderma coloniale HOM05D000452 ORTHO05D333388 1.1e-08 65.9 388 24.5
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 1.5e-07 62.0 66 50.0


User provided reference genes

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