Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.S7P5W6 Arachis hypogaea HOM05D006469 ORTHO05D008034 3.3e-186 654.8 318 100.0
arahy.Tifrunner.gnm1.ann1.DLPQ3A Arachis hypogaea HOM05D006469 ORTHO05D008034 3.2e-181 638.3 318 97.8
Psat4g100640 Pisum sativum HOM05D006469 ORTHO05D008034 7.0e-136 487.6 318 77.4
TPR.G24083 Trifolium pratense HOM05D006469 ORTHO05D008034 6.0e-135 484.6 319 76.2
Lalb_Chr05g0229831 Lupinus albus HOM05D006469 ORTHO05D008034 2.8e-132 475.7 317 75.4
Lj4g0017154 Lotus japonicus HOM05D006469 ORTHO05D008034 6.2e-132 474.6 319 75.2
Glyma.02G047300 Glycine max HOM05D006469 ORTHO05D008034 1.4e-131 473.4 320 76.2
Medtr8g075480 Medicago truncatula HOM05D006469 ORTHO05D008034 5.2e-131 471.5 323 73.7
Phvul.003G263600 Phaseolus vulgaris HOM05D006469 ORTHO05D008034 6.8e-131 471.1 316 76.6
VMungo0251G1912 Vigna mungo HOM05D006469 ORTHO05D008034 2.6e-122 442.6 351 67.5
Haze_03751 Corylus avellana HOM05D006469 ORTHO05D008034 1.3e-118 430.3 324 66.4
QL06p050655 Quercus lobata HOM05D006469 ORTHO05D008034 4.3e-117 425.2 328 65.5
QL06p050760 Quercus lobata HOM05D006469 ORTHO05D008034 5.6e-117 424.9 328 65.5
CiPaw.07G059900 Carya illinoinensis HOM05D006469 ORTHO05D008034 4.1e-112 408.7 334 62.0
GSVIVG01018765001 Vitis vinifera HOM05D006469 ORTHO05D008034 3.5e-111 405.6 319 63.6
TAR376G0066 Trochodendron aralioides HOM05D006469 ORTHO05D008034 7.8e-111 404.4 315 65.4
Dinv33650 Davidia involucrata HOM05D006469 ORTHO05D008034 6.6e-110 401.4 315 64.4
Atru.chr3.815 Acer truncatum HOM05D006469 ORTHO05D008034 2.5e-109 399.4 315 66.7
Ciclev10026134m.g Citrus clementina HOM05D006469 ORTHO05D008034 5.6e-109 398.3 320 63.8
QL11p035074 Quercus lobata HOM05D006469 ORTHO05D008034 5.6e-109 398.3 381 55.9
Manes.02G105600 Manihot esculenta HOM05D006469 ORTHO05D008034 2.1e-108 396.4 312 63.5
Cfa006983 Carpinus fangiana HOM05D006469 ORTHO05D008034 3.6e-108 395.6 320 63.8
MD02G1130100 Malus domestica HOM05D006469 ORTHO05D008034 6.9e-107 391.3 312 63.5
CsaV3_6G047220 Cucumis sativus L. HOM05D006469 ORTHO05D008034 1.2e-106 390.6 323 61.3
Thecc.01G016800 Theobroma cacao HOM05D006469 ORTHO05D008034 1.2e-106 390.6 316 63.6
FvH4_1g11701 Fragaria vesca HOM05D006469 ORTHO05D008034 1.5e-106 390.2 315 62.9
Potri.007G057000 Populus trichocarpa HOM05D006469 ORTHO05D008034 1.5e-106 390.2 317 62.8
Sopen03g006220 Solanum pennellii HOM05D006469 ORTHO05D008034 2.6e-106 389.4 316 60.1
RcHm_v2.0_Chr2g0099281 Rosa chinensis HOM05D006469 ORTHO05D008034 3.4e-106 389.0 315 62.5
Lj4A220G94 Lonicera japonica HOM05D006469 ORTHO05D008034 9.9e-106 387.5 318 62.3
Solyc03g033470.3 Solanum lycopersicum HOM05D006469 ORTHO05D008034 1.3e-105 387.1 316 59.8
CANSAT25G3476 Cannabis sativa HOM05D006469 ORTHO05D008034 1.7e-105 386.7 319 59.9
MELO3C007914.2 Cucumis melo HOM05D006469 ORTHO05D008034 1.9e-104 383.3 323 60.1
Lsat_1_v5_gn_2_76041 Lactuca sativa HOM05D006469 ORTHO05D008034 5.4e-104 381.7 321 61.4
Gohir.A02G171200 Gossypium hirsutum HOM05D006469 ORTHO05D008034 9.3e-104 380.9 316 60.4
Nn6g32040 Nelumbo nucifera HOM05D006469 ORTHO05D008034 9.3e-104 380.9 327 60.9
Gohir.D03G008900 Gossypium hirsutum HOM05D006469 ORTHO05D008034 1.6e-103 380.2 316 60.1
CAN.G1817.1 Capsicum annuum HOM05D006469 ORTHO05D008034 6.0e-103 378.3 311 58.8
Gorai.003G009100 Gossypium raimondii HOM05D006469 ORTHO05D008034 6.0e-103 378.3 316 60.1
PGSC0003DMG402022530 Solanum tuberosum HOM05D006469 ORTHO05D008034 6.0e-103 378.3 318 58.5
Eucgr.I02338 Eucalyptus grandis HOM05D006469 ORTHO05D008034 3.9e-102 375.6 313 60.7
Migut.L00672 Erythranthe guttata HOM05D006469 ORTHO05D008034 1.1e-101 374.0 317 58.0
Thhalv10025786m.g Eutrema salsugineum HOM05D006469 ORTHO05D008034 3.3e-101 372.5 307 60.6
AT4G35987 Arabidopsis thaliana HOM05D006469 ORTHO05D008034 1.3e-100 370.5 313 58.5
A01p02720 Brassica napus HOM05D006469 ORTHO05D008034 3.6e-100 369.0 313 58.1
BraA01t00258Z Brassica rapa HOM05D006469 ORTHO05D008034 3.1e-99 365.9 314 58.6
BcaNung00773 Brassica carinata HOM05D006469 ORTHO05D008034 5.3e-99 365.2 314 58.0
CARHR244380 Cardamine hirsuta HOM05D006469 ORTHO05D008034 6.9e-99 364.8 309 59.9
HanXRQChr04g0119941 Helianthus annuus HOM05D006469 ORTHO05D008034 6.9e-99 364.8 326 60.1
PSO170G4882 Papaver somniferum HOM05D006469 ORTHO05D008034 6.9e-99 364.8 308 61.7
Aa31LG6G12960 Aethionema arabicum HOM05D006469 ORTHO05D008034 1.2e-98 364.0 309 58.9
C01p03020 Brassica napus HOM05D006469 ORTHO05D008034 1.2e-98 364.0 314 57.6
FAN26G2561 Fragaria x ananassa HOM05D006469 ORTHO05D008034 1.2e-98 364.0 288 62.8
SalBow5G1778 Salvia bowleyana HOM05D006469 ORTHO05D008034 1.5e-98 363.6 318 58.5
Migut.L00699 Erythranthe guttata HOM05D006469 ORTHO05D008034 3.4e-98 362.5 317 56.8
BolC1t00288H Brassica oleracea HOM05D006469 ORTHO05D008034 5.8e-98 361.7 314 57.0
TWI73G0981 Tripterygium wilfordii HOM05D006469 ORTHO05D008034 7.6e-98 361.3 306 59.2
Sp7g33770 Schrenkiella parvula HOM05D006469 ORTHO05D008034 2.9e-97 359.4 313 58.5
Cc07_g10870 Coffea canephora HOM05D006469 ORTHO05D008034 4.9e-97 358.6 328 55.8
CSS0000310 Camellia sinensis var. sinensis HOM05D006469 ORTHO05D008034 1.1e-96 357.5 309 60.5
MSTRG.3610 Avicennia marina HOM05D006469 ORTHO05D008034 1.9e-96 356.7 317 57.1
FAN19G1692 Fragaria x ananassa HOM05D006469 ORTHO05D008034 1.6e-95 353.6 326 58.3
CSS0021178 Camellia sinensis var. sinensis HOM05D006469 ORTHO05D008034 2.1e-95 353.2 309 59.9
PGR102G1692 Punica granatum HOM05D006469 ORTHO05D008034 4.6e-95 352.1 324 59.6
PSO700G0153 Papaver somniferum HOM05D006469 ORTHO05D008034 1.0e-94 350.9 278 62.9
Hma1.2p1_0258F.1_g104050 Hydrangea macrophylla HOM05D006469 ORTHO05D008034 7.4e-93 344.7 242 68.2
Sc07g0001050 Simmondsia chinensis HOM05D006469 ORTHO05D008034 1.6e-92 343.6 309 56.3
Ca_22385_v3 Cicer arietinum L. HOM05D006469 ORTHO05D008034 1.1e-91 340.9 200 84.5
Os03g0243800 Oryza sativa ssp. japonica HOM05D006469 ORTHO05D008034 3.1e-91 339.3 320 54.4
ECA238G1797 Erigeron canadensis HOM05D006469 ORTHO05D008034 5.3e-91 338.6 335 54.0
AUR62029479 Chenopodium quinoa HOM05D006469 ORTHO05D008034 9.0e-91 337.8 314 56.1
Zm00001eb398850 Zea mays HOM05D006469 ORTHO05D008034 9.0e-91 337.8 322 54.3
Aqoxy5G01802 Aquilegia oxysepala HOM05D006469 ORTHO05D008034 9.9e-90 334.3 309 55.3
EL10Ac6g15486 Beta vulgaris HOM05D006469 ORTHO05D008034 1.3e-89 334.0 316 54.7
Oeu005141.2 Olea europaea HOM05D006469 ORTHO05D008034 3.5e-87 325.9 321 53.9
CANSAT25G3534 Cannabis sativa HOM05D006469 ORTHO05D008034 1.3e-86 323.9 283 59.0
Carub.0007s0423 Capsella rubella HOM05D006469 ORTHO05D008034 1.9e-85 320.1 309 54.7
Sed0020941 Sechium edule HOM05D006469 ORTHO05D008034 1.9e-85 320.1 223 69.1
THA.LOC104807502 Tarenaya hassleriana HOM05D006469 ORTHO05D008034 4.8e-84 315.5 240 63.8
Actinidia22967 Actinidia chinensis HOM05D006469 ORTHO05D008034 1.4e-83 313.9 292 56.2
SGA_v2.0_scaffold45G17085 Striga asiatica HOM05D006469 ORTHO05D008034 2.5e-80 303.1 404 43.1
AUR62003357 Chenopodium quinoa HOM05D006469 ORTHO05D008034 1.2e-79 300.8 223 63.7
MBI05_g33508_MAGBIO Magnolia biondii HOM05D006469 ORTHO05D008034 2.7e-79 299.7 262 57.6
Hma1.2p1_0258F.1_g104040 Hydrangea macrophylla HOM05D006469 ORTHO05D008034 1.8e-75 287.0 199 68.8
Nitab4.5_0003548g0050 Nicotiana tabacum HOM05D006469 ORTHO05D008034 2.4e-75 286.6 279 53.8
Pp3c16_25190 Physcomitrium patens HOM05D006469 ORTHO05D008034 1.9e-72 276.9 309 43.7
Mapoly0087s0053 Marchantia polymorpha HOM05D006469 ORTHO05D008034 2.1e-71 273.5 316 43.7
Nitab4.5_0000864g0140 Nicotiana tabacum HOM05D006469 ORTHO05D008034 5.1e-70 268.9 347 46.1
Hund14051 Selenicereus undatus HOM05D006469 ORTHO05D008034 1.7e-68 263.8 392 41.3
Sabra07G0048900 Salix brachista HOM05D006469 ORTHO05D008034 2.6e-66 256.5 225 60.9
Nitab4.5_0008011g0040 Nicotiana tabacum HOM05D006469 ORTHO05D008034 1.7e-65 253.8 345 44.6
Duzib147G1015 Durio zibethinus HOM05D006469 ORTHO05D008034 3.2e-64 249.6 316 45.6
Actinidia17434 Actinidia chinensis HOM05D006469 ORTHO05D008034 2.1e-63 246.9 228 57.9
DCAR_021507 Daucus carota HOM05D006469 ORTHO05D008034 2.8e-60 236.5 304 43.4
ClCG01G020380 Citrullus lanatus HOM05D000348 ORTHO05D000244 1.3e-57 227.6 352 41.8
Prupe.7G169600 Prunus persica HOM05D006469 ORTHO05D008034 2.5e-56 223.4 177 65.5
Peaxi162Scf00328g00828 Petunia axillaris HOM05D006469 ORTHO05D008034 1.4e-54 217.6 379 39.1
FAN23G0491 Fragaria x ananassa HOM05D000153 ORTHO05D000118 7.4e-53 211.8 249 47.8
Cpa.g.sc6.265 Carica papaya HOM05D006469 ORTHO05D008034 1.1e-51 208.0 182 59.3
SMO361G0665 Selaginella moellendorffii HOM05D006469 ORTHO05D008034 1.3e-49 201.1 194 47.4
CDE02G4243 Ceratophyllum demersum HOM05D006469 ORTHO05D008034 7.2e-48 195.3 223 46.2
unitig_46.g18721 Utricularia gibba HOM05D006469 ORTHO05D008034 1.0e-46 191.4 202 50.5
Manes.01G147000 Manihot esculenta HOM05D006469 ORTHO05D008034 2.0e-45 187.2 205 51.7
Ah.03g148920 Amaranthus hybridus HOM05D006469 ORTHO05D008034 1.6e-42 177.6 178 52.8
BcaC04g20386 Brassica carinata HOM05D006469 ORTHO05D008034 1.0e-41 174.9 243 44.0
BcaC04g20390 Brassica carinata HOM05D006469 ORTHO05D008034 1.0e-41 174.9 243 44.0
C09p44210 Brassica napus HOM05D006469 ORTHO05D008034 3.8e-41 172.9 249 43.4
Cpa.g.sc6.264 Carica papaya HOM05D006469 ORTHO05D008034 8.5e-41 171.8 119 66.4
BolC9t57293H Brassica oleracea HOM05D006469 ORTHO05D008034 1.8e-38 164.1 220 45.5
TAR376G1090 Trochodendron aralioides HOM05D006469 ORTHO05D008034 6.8e-38 162.2 106 71.7
ATR0810G135 Amborella trichopoda HOM05D006469 ORTHO05D008034 5.7e-37 159.1 182 48.9
BcaC03g14989 Brassica carinata HOM05D006469 ORTHO05D008034 2.8e-36 156.8 174 50.6
Nitab4.5_0000438g0160 Nicotiana tabacum HOM05D006469 ORTHO05D008034 3.3e-32 143.3 206 39.8
SEGI_12964 Sequoiadendron giganteum HOM05D006469 ORTHO05D008034 5.2e-30 136.0 137 46.0
Sabra07G0049000 Salix brachista HOM05D006469 ORTHO05D008034 1.6e-26 124.4 94 60.6
Sabra05G0092400 Salix brachista HOM05D006469 ORTHO05D008034 5.0e-25 119.4 180 40.0
CDE02G4028 Ceratophyllum demersum HOM05D006469 ORTHO05D008034 6.4e-20 102.4 96 54.2
BolC2t08600H Brassica oleracea HOM05D006469 ORTHO05D008034 5.4e-19 99.4 147 40.8
MD15G1244100 Malus domestica HOM05D006469 ORTHO05D008034 2.7e-18 97.1 87 55.2
COL.COLO4_22441 Corchorus olitorius HOM05D006469 ORTHO05D008034 4.1e-11 73.2 93 46.2
Cc08_g10920 Coffea canephora HOM05D001920 ORTHO05D004895 3.9e-09 66.6 207 23.7
SMO307G0066 Selaginella moellendorffii HOM05D002553 ORTHO05D002767 6.6e-09 65.9 165 30.9
Sc09g0003350 Simmondsia chinensis HOM05D002553 ORTHO05D002767 8.6e-09 65.5 128 32.8
QL03p004484 Quercus lobata HOM05D002553 ORTHO05D002767 1.9e-08 64.3 150 31.3
CiPaw.07G014700 Carya illinoinensis HOM05D002553 ORTHO05D002767 2.5e-08 63.9 136 32.4
Migut.M00920 Erythranthe guttata HOM05D002553 ORTHO05D002767 2.5e-08 63.9 163 28.8
Thhalv10003627m.g Eutrema salsugineum HOM05D002553 ORTHO05D002767 5.6e-08 62.8 143 28.7
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 7.3e-08 62.4 165 26.1
Phvul.006G093922 Phaseolus vulgaris HOM05D002553 ORTHO05D002767 9.5e-08 62.0 136 31.6
SMO364G0506 Selaginella moellendorffii HOM05D005677 ORTHO05D006966 1.2e-07 61.6 135 31.9
MSTRG.16234 Avicennia marina HOM05D002553 ORTHO05D002767 2.8e-07 60.5 135 32.6
Thecc.01G035800 Theobroma cacao HOM05D005677 ORTHO05D006966 2.8e-07 60.5 135 31.9
vmacro21977 Vaccinium macrocarpon HOM05D001920 ORTHO05D004895 2.8e-07 60.5 141 28.4
Aa31LG4G18970 Aethionema arabicum HOM05D005677 ORTHO05D006966 4.7e-07 59.7 135 31.9
Nitab4.5_0000438g0170 Nicotiana tabacum HOM05D006469 ORTHO05D008034 4.7e-07 59.7 96 39.6
Cc02_g32700 Coffea canephora HOM05D002553 ORTHO05D002767 6.2e-07 59.3 135 32.6
Lj7C259G6 Lonicera japonica HOM05D001920 ORTHO05D004895 6.2e-07 59.3 144 29.9
Aqoxy1G02454 Aquilegia oxysepala HOM05D002553 ORTHO05D002767 1.1e-06 58.5 151 28.5
Lsat_1_v5_gn_4_71781 Lactuca sativa HOM05D001920 ORTHO05D004895 1.1e-06 58.5 139 28.8
Sed0026712 Sechium edule HOM05D001920 ORTHO05D004895 1.4e-06 58.2 144 29.9
VMungo0464G1375 Vigna mungo HOM05D001602 ORTHO05D001470 1.4e-06 58.2 176 28.4
ClCG05G018010 Citrullus lanatus HOM05D001920 ORTHO05D004895 1.8e-06 57.8 148 27.7
Lalb_Chr16g0388501 Lupinus albus HOM05D005677 ORTHO05D006966 1.8e-06 57.8 102 37.3
MCO11G410 Micromonas commoda HOM05D016594 ORTHO05D018380 1.8e-06 57.8 138 29.7
SHI18719 Sapria himalayana HOM05D001920 ORTHO05D004895 1.8e-06 57.8 147 24.5
MELO3C016884.2 Cucumis melo HOM05D001920 ORTHO05D004895 2.3e-06 57.4 148 27.7
Pp3c15_20230 Physcomitrium patens HOM05D001920 ORTHO05D004895 2.3e-06 57.4 145 27.6
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 2.3e-06 57.4 142 29.6
TAR633G1107 Trochodendron aralioides HOM05D002553 ORTHO05D002767 2.3e-06 57.4 130 33.1
unitig_32.g11004 Utricularia gibba HOM05D002553 ORTHO05D002767 2.3e-06 57.4 72 38.9
arahy.Tifrunner.gnm1.ann1.Z4JLGK Arachis hypogaea HOM05D001920 ORTHO05D004895 3.1e-06 57.0 143 28.7
ClCG10G001950 Citrullus lanatus HOM05D001602 ORTHO05D001470 3.1e-06 57.0 136 32.4
Mapoly0115s0038 Marchantia polymorpha HOM05D001602 ORTHO05D001470 3.1e-06 57.0 151 33.8
Actinidia25711 Actinidia chinensis HOM05D001920 ORTHO05D004895 4.0e-06 56.6 141 28.4
Duzib168G0495 Durio zibethinus HOM05D001920 ORTHO05D004895 4.0e-06 56.6 144 27.8
ECA234G4475 Erigeron canadensis HOM05D001920 ORTHO05D004895 4.0e-06 56.6 145 29.0
Glyma.14G097800 Glycine max HOM05D001920 ORTHO05D004895 4.0e-06 56.6 145 27.6
Phvul.004G136600 Phaseolus vulgaris HOM05D001602 ORTHO05D001470 4.0e-06 56.6 170 27.6
TWI56G0412 Tripterygium wilfordii HOM05D002553 ORTHO05D002767 4.0e-06 56.6 136 30.1
Gohir.D06G085100 Gossypium hirsutum HOM05D001920 ORTHO05D004895 5.2e-06 56.2 144 28.5
Gorai.010G098400 Gossypium raimondii HOM05D001920 ORTHO05D004895 5.2e-06 56.2 144 28.5
HanXRQChr10g0309731 Helianthus annuus HOM05D001920 ORTHO05D004895 5.2e-06 56.2 144 29.2
Lj7C264T3 Lonicera japonica HOM05D001920 ORTHO05D004895 5.2e-06 56.2 141 30.5
Lalb_Chr14g0367171 Lupinus albus HOM05D001602 ORTHO05D001470 5.2e-06 56.2 107 31.8
Phvul.001G092600 Phaseolus vulgaris HOM05D001920 ORTHO05D004895 5.2e-06 56.2 145 27.6
SpUn0826_0010 Schrenkiella parvula HOM05D001602 ORTHO05D001470 5.2e-06 56.2 138 27.5
TPR.G13113 Trifolium pratense HOM05D001920 ORTHO05D004895 5.2e-06 56.2 144 26.4
arahy.Tifrunner.gnm1.ann1.ZYB4F6 Arachis hypogaea HOM05D001920 ORTHO05D004895 6.8e-06 55.8 144 27.8
Ca_13119_v3 Cicer arietinum L. HOM05D001920 ORTHO05D004895 6.8e-06 55.8 144 27.1
Lalb_Chr14g0366411 Lupinus albus HOM05D001920 ORTHO05D004895 6.8e-06 55.8 144 27.1
Zm00001eb417780 Zea mays HOM05D002553 ORTHO05D002767 6.8e-06 55.8 154 29.9
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 8.9e-06 55.5 159 28.9
Cre17.g747647 Chlamydomonas reinhardtii HOM05D002553 ORTHO05D002767 8.9e-06 55.5 182 27.5
Lj5g0021243 Lotus japonicus HOM05D001920 ORTHO05D004895 8.9e-06 55.5 140 29.3
Pp3c26_2100 Physcomitrium patens HOM05D001602 ORTHO05D001470 8.9e-06 55.5 151 29.1
Sc23g0005760 Simmondsia chinensis HOM05D001920 ORTHO05D004895 8.9e-06 55.5 140 29.3


User provided reference genes

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