Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.S7BBNZ Arachis hypogaea HOM05D007094 ORTHO05D008264 4.3e-59 231.1 116 100.0
arahy.Tifrunner.gnm1.ann1.WS3KYJ Arachis hypogaea HOM05D007094 ORTHO05D008264 8.2e-58 226.9 116 98.3
arahy.Tifrunner.gnm1.ann1.MLT6HR Arachis hypogaea HOM05D007094 ORTHO05D008264 7.9e-53 210.3 116 91.4
Lalb_Chr17g0347841 Lupinus albus HOM05D007094 ORTHO05D008264 2.4e-41 172.2 118 78.0
Lalb_Chr04g0249301 Lupinus albus HOM05D007094 ORTHO05D008264 1.7e-39 166.0 118 77.1
Glyma.02G277800 Glycine max HOM05D007094 ORTHO05D008264 6.5e-39 164.1 117 75.2
Glyma.14G036700 Glycine max HOM05D007094 ORTHO05D008264 9.4e-38 160.2 117 73.5
LjContig00564g0008375 Lotus japonicus HOM05D007094 ORTHO05D008264 2.1e-37 159.1 118 72.9
Medtr5g089030 Medicago truncatula HOM05D007094 ORTHO05D008264 1.1e-35 153.3 122 69.7
Psat0s2305g0120 Pisum sativum HOM05D007094 ORTHO05D008264 2.0e-35 152.5 118 66.9
TPR.G16423 Trifolium pratense HOM05D007094 ORTHO05D008264 9.7e-35 150.2 118 67.8
Phvul.008G203100 Phaseolus vulgaris HOM05D007094 ORTHO05D008264 4.1e-33 144.8 117 66.7
Dinv22210 Davidia involucrata HOM05D007094 ORTHO05D008264 2.7e-29 132.1 117 63.2
CiPaw.14G110600 Carya illinoinensis HOM05D007094 ORTHO05D008264 2.0e-27 125.9 116 58.6
Gohir.A09G108300 Gossypium hirsutum HOM05D007094 ORTHO05D008264 2.6e-27 125.6 115 58.3
Prupe.6G146500 Prunus persica HOM05D007094 ORTHO05D008264 4.4e-27 124.8 118 58.5
RcHm_v2.0_Chr5g0048901 Rosa chinensis HOM05D007094 ORTHO05D008264 4.4e-27 124.8 118 59.3
MD11G1174500 Malus domestica HOM05D007094 ORTHO05D008264 5.7e-27 124.4 118 56.8
QL01p016497 Quercus lobata HOM05D007094 ORTHO05D008264 7.4e-27 124.0 118 57.6
QL01p024141 Quercus lobata HOM05D007094 ORTHO05D008264 7.4e-27 124.0 118 57.6
VMungo0647G0750 Vigna mungo HOM05D007094 ORTHO05D008264 3.7e-26 121.7 132 57.6
Migut.D00679 Erythranthe guttata HOM05D007094 ORTHO05D008264 1.4e-25 119.8 116 55.2
MSTRG.21339 Avicennia marina HOM05D007094 ORTHO05D008264 2.4e-25 119.0 117 55.6
Haze_23270 Corylus avellana HOM05D007094 ORTHO05D008264 3.1e-25 118.6 117 55.6
Cfa003293 Carpinus fangiana HOM05D007094 ORTHO05D008264 5.3e-25 117.9 117 56.4
FvH4_3g26230 Fragaria vesca HOM05D007094 ORTHO05D008264 1.6e-24 116.3 118 54.2
FAN11G3047 Fragaria x ananassa HOM05D007094 ORTHO05D008264 1.6e-24 116.3 118 54.2
FAN25G3244 Fragaria x ananassa HOM05D007094 ORTHO05D008264 2.0e-24 115.9 118 53.4
Gorai.006G122200 Gossypium raimondii HOM05D007094 ORTHO05D008264 2.0e-24 115.9 116 56.0
Sc16g0010910 Simmondsia chinensis HOM05D007094 ORTHO05D008264 4.5e-24 114.8 115 53.0
GSVIVG01037355001 Vitis vinifera HOM05D007094 ORTHO05D008264 4.5e-24 114.8 116 58.6
Nn7g36894 Nelumbo nucifera HOM05D007094 ORTHO05D008264 5.9e-24 114.4 117 54.7
Gohir.D09G105400 Gossypium hirsutum HOM05D007094 ORTHO05D008264 7.7e-24 114.0 116 55.2
Ciclev10017201m.g Citrus clementina HOM05D007094 ORTHO05D008264 1.3e-23 113.2 118 58.5
THA.LOC104811204 Tarenaya hassleriana HOM05D007094 ORTHO05D008264 1.7e-23 112.8 115 53.9
Rhsim13G0205900 Rhododendron simsii HOM05D007094 ORTHO05D008264 2.2e-23 112.5 123 54.5
MSTRG.21340 Avicennia marina HOM05D007094 ORTHO05D008264 3.8e-23 111.7 114 54.4
Duzib168G1032 Durio zibethinus HOM05D007094 ORTHO05D008264 5.0e-23 111.3 117 57.3
Duzib170G0850 Durio zibethinus HOM05D007094 ORTHO05D008264 1.5e-22 109.8 117 55.6
Manes.01G177900 Manihot esculenta HOM05D007094 ORTHO05D008264 2.5e-22 109.0 119 49.6
Atru.chr3.2855 Acer truncatum HOM05D007094 ORTHO05D008264 3.2e-22 108.6 116 54.3
Atru.chr3.2857 Acer truncatum HOM05D007094 ORTHO05D008264 3.2e-22 108.6 116 54.3
Thecc.09G254700 Theobroma cacao HOM05D007094 ORTHO05D008264 5.5e-22 107.8 116 52.6
Oeu001497.1 Olea europaea HOM05D007094 ORTHO05D008264 7.2e-22 107.5 115 54.8
HPP92_015618 Vanilla planifolia HOM05D007094 ORTHO05D008264 7.2e-22 107.5 117 48.7
Aqoxy2G00509 Aquilegia oxysepala HOM05D007094 ORTHO05D008264 9.4e-22 107.1 115 54.8
Sed0011068 Sechium edule HOM05D007094 ORTHO05D008264 9.4e-22 107.1 115 53.0
Cpa.g.sc743.4 Carica papaya HOM05D007094 ORTHO05D008264 1.2e-21 106.7 120 49.2
Ah.04g159660 Amaranthus hybridus HOM05D007094 ORTHO05D008264 2.1e-21 105.9 115 47.8
ClCG02G022690 Citrullus lanatus HOM05D007094 ORTHO05D008264 2.1e-21 105.9 115 52.2
PGR119G0280 Punica granatum HOM05D007094 ORTHO05D008264 2.1e-21 105.9 116 50.0
TWI31G1326 Tripterygium wilfordii HOM05D007094 ORTHO05D008264 4.7e-21 104.8 120 51.7
Actinidia06990 Actinidia chinensis HOM05D007094 ORTHO05D008264 6.1e-21 104.4 115 50.4
EL10Ac4g10089 Beta vulgaris HOM05D007094 ORTHO05D008264 8.0e-21 104.0 116 50.0
PSO339G5619 Papaver somniferum HOM05D007094 ORTHO05D008264 8.0e-21 104.0 122 49.2
PSO384G3224 Papaver somniferum HOM05D007094 ORTHO05D008264 1.4e-20 103.2 122 48.4
Duzib150G1213 Durio zibethinus HOM05D007094 ORTHO05D008264 3.0e-20 102.1 116 53.4
ATR0307G079 Amborella trichopoda HOM05D007094 ORTHO05D008264 5.2e-20 101.3 112 50.9
COL.COLO4_24933 Corchorus olitorius HOM05D007094 ORTHO05D008264 5.2e-20 101.3 116 52.6
MBI13_g09208_MAGBIO Magnolia biondii HOM05D007094 ORTHO05D008264 6.8e-20 100.9 117 50.4
C03p06400 Brassica napus HOM05D007094 ORTHO05D008264 1.2e-19 100.1 118 49.2
CANSAT54G2518 Cannabis sativa HOM05D007094 ORTHO05D008264 1.5e-19 99.8 118 44.1
SGA_v2.0_scaffold29G12215 Striga asiatica HOM05D007094 ORTHO05D008264 1.5e-19 99.8 102 52.9
MELO3C014546.2 Cucumis melo HOM05D007094 ORTHO05D008264 2.0e-19 99.4 100 58.0
unitig_52.g16873 Utricularia gibba HOM05D007094 ORTHO05D008264 2.0e-19 99.4 116 50.0
Aa31LG3G14990 Aethionema arabicum HOM05D007094 ORTHO05D008264 3.4e-19 98.6 116 50.9
BcaB01g05415 Brassica carinata HOM05D007094 ORTHO05D008264 5.7e-19 97.8 119 47.9
Carub.0006s1075 Capsella rubella HOM05D007094 ORTHO05D008264 5.7e-19 97.8 117 48.7
Cc01_g06340 Coffea canephora HOM05D007094 ORTHO05D008264 9.7e-19 97.1 125 45.6
A03p05490 Brassica napus HOM05D007094 ORTHO05D008264 1.7e-18 96.3 117 49.6
BraA03t09887Z Brassica rapa HOM05D007094 ORTHO05D008264 1.7e-18 96.3 117 49.6
TAR633G0748 Trochodendron aralioides HOM05D007094 ORTHO05D008264 2.2e-18 95.9 101 57.4
CDE04G2345 Ceratophyllum demersum HOM05D007094 ORTHO05D008264 6.3e-18 94.4 121 45.5
FAN21G1281 Fragaria x ananassa HOM05D007094 ORTHO05D008264 6.3e-18 94.4 101 55.4
AT5G12240 Arabidopsis thaliana HOM05D007094 ORTHO05D008264 1.1e-17 93.6 119 47.1
Potri.009G069000 Populus trichocarpa HOM05D007094 ORTHO05D008264 1.1e-17 93.6 130 46.9
CARHR200870 Cardamine hirsuta HOM05D007094 ORTHO05D008264 1.4e-17 93.2 113 47.8
Zm00001eb110280 Zea mays HOM05D007094 ORTHO05D008264 5.3e-17 91.3 116 47.4
Potri.001G274400 Populus trichocarpa HOM05D007094 ORTHO05D008264 1.2e-16 90.1 115 45.2
BolC9t59296H Brassica oleracea HOM05D007094 ORTHO05D008264 1.6e-16 89.7 125 43.2
Lsat_1_v5_gn_2_26200 Lactuca sativa HOM05D007094 ORTHO05D008264 1.6e-16 89.7 116 46.6
ECA238G4818 Erigeron canadensis HOM05D007094 ORTHO05D008264 7.7e-16 87.4 116 44.8
Lj1A303G25 Lonicera japonica HOM05D007094 ORTHO05D008264 2.9e-15 85.5 74 62.2
Lj1A294T17 Lonicera japonica HOM05D007094 ORTHO05D008264 3.8e-15 85.1 73 63.0
Solyc11g065080.2 Solanum lycopersicum HOM05D007094 ORTHO05D008264 3.8e-15 85.1 116 44.8
Zm00001eb329040 Zea mays HOM05D007094 ORTHO05D008264 3.8e-15 85.1 115 43.5
CAN.G1167.7 Capsicum annuum HOM05D007094 ORTHO05D008264 6.5e-15 84.3 116 44.0
Sopen11g024820 Solanum pennellii HOM05D007094 ORTHO05D008264 1.1e-14 83.6 117 43.6
PGSC0003DMG402031249 Solanum tuberosum HOM05D007094 ORTHO05D008264 1.5e-14 83.2 117 43.6
DCAR_029904 Daucus carota HOM05D007094 ORTHO05D008264 7.2e-14 80.9 94 48.9
Sabra16G0168900 Salix brachista HOM05D007094 ORTHO05D008264 1.2e-13 80.1 134 39.6
BraA10t44623Z Brassica rapa HOM05D007094 ORTHO05D008264 3.6e-13 78.6 121 41.3
Hund21962 Selenicereus undatus HOM05D007094 ORTHO05D008264 4.7e-13 78.2 202 30.2
A10p25550 Brassica napus HOM05D007094 ORTHO05D008264 1.0e-12 77.0 116 41.4
HanXRQChr12g0381391 Helianthus annuus HOM05D007094 ORTHO05D008264 1.5e-11 73.2 100 46.0
BolC3t13146H Brassica oleracea HOM05D000282 ORTHO05D000272 4.4e-11 71.6 78 47.4
Oeu032576.1 Olea europaea HOM05D007094 ORTHO05D008264 7.5e-11 70.9 50 66.0
Peaxi162Scf00004g04119 Petunia axillaris HOM05D007094 ORTHO05D008264 8.3e-10 67.4 89 43.8
Nitab4.5_0004018g0040 Nicotiana tabacum HOM05D007094 ORTHO05D008264 1.1e-09 67.0 89 43.8
Eucgr.J00674 Eucalyptus grandis HOM05D007094 ORTHO05D008264 1.4e-09 66.6 96 43.8
AagrBONN_evm.TU.Sc2ySwM_368.1089 Anthoceros agrestis HOM05D007094 ORTHO05D008264 1.6e-08 63.2 124 35.5
vmacro08628 Vaccinium macrocarpon HOM05D007094 ORTHO05D008264 3.5e-08 62.0 80 48.8
Os07g0641800 Oryza sativa ssp. japonica HOM05D007094 ORTHO05D008264 7.7e-08 60.8 48 58.3
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 3.8e-07 58.5 43 55.8
Nitab4.5_0000390g0140 Nicotiana tabacum HOM05D021104 ORTHO05D008264 8.6e-07 57.4 88 40.9
Hma1.2p1_0460F.1_g157640 Hydrangea macrophylla HOM05D007094 ORTHO05D008264 1.5e-06 56.6 53 58.5
Peaxi162Scf00032g02018 Petunia axillaris HOM05D021104 ORTHO05D008264 2.5e-06 55.8 84 38.1
Nitab4.5_0006052g0020 Nicotiana tabacum HOM05D021104 ORTHO05D008264 3.3e-06 55.5 83 41.0
Pp3c24_4990 Physcomitrium patens HOM05D007094 ORTHO05D008264 4.2e-06 55.1 117 32.5
SalBow6G5897 Salvia bowleyana HOM05D007094 ORTHO05D008264 5.5e-06 54.7 57 54.4
PGSC0003DMG400004429 Solanum tuberosum HOM05D021104 ORTHO05D008264 5.5e-06 54.7 84 39.3
Mapoly0029s0132 Marchantia polymorpha HOM05D001703 ORTHO05D005708 9.5e-06 53.9 118 32.2
Solyc01g008680.4 Solanum lycopersicum HOM05D021104 ORTHO05D008264 9.5e-06 53.9 84 39.3
Sopen01g004200 Solanum pennellii HOM05D021104 ORTHO05D008264 9.5e-06 53.9 84 39.3


User provided reference genes

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