Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 0.0e+00 1109.0 552 100.0
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 2.2e-310 1068.1 552 96.9
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 6.8e-195 684.5 552 62.5
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 1.9e-189 666.4 552 61.4
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 1.6e-188 663.3 558 60.2
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 1.6e-188 663.3 552 61.8
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 4.7e-188 661.8 554 61.0
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 7.5e-186 654.4 552 60.5
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 9.2e-184 647.5 551 60.4
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 7.8e-183 644.4 551 59.2
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 6.6e-182 641.3 550 59.5
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 1.7e-158 563.5 558 50.2
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 1.4e-155 553.9 554 50.4
Medtr3g019010 Medicago truncatula HOM05D006558 ORTHO05D008424 4.2e-152 542.3 527 55.6
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 1.1e-149 534.3 561 48.7
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 3.3e-149 532.7 556 48.7
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 4.3e-149 532.3 557 49.9
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 2.6e-146 523.1 560 48.8
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 3.4e-146 522.7 557 48.3
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 4.5e-146 522.3 553 48.3
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 2.2e-145 520.0 561 48.0
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 1.4e-144 517.3 558 47.0
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 5.5e-144 515.4 548 47.1
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 9.3e-144 514.6 553 48.5
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 2.7e-143 513.1 553 48.8
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 6.0e-143 511.9 564 48.6
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 1.0e-142 511.1 548 46.9
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 5.1e-142 508.8 552 48.7
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 1.1e-141 507.7 557 47.4
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 4.3e-141 505.8 556 46.9
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 1.6e-140 503.8 557 47.2
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 1.1e-139 501.1 548 47.8
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 3.1e-139 499.6 556 47.1
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 6.9e-139 498.4 365 67.4
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 1.5e-138 497.3 560 46.4
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 4.5e-138 495.7 549 46.8
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 1.7e-137 493.8 572 46.0
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 5.0e-137 492.3 572 46.0
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 1.2e-135 487.6 538 46.5
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 2.1e-135 486.9 554 47.5
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 1.8e-134 483.8 552 44.7
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 2.3e-134 483.4 563 46.2
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 3.0e-134 483.0 558 45.9
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 3.0e-134 483.0 552 46.0
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 1.5e-133 480.7 559 44.0
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 2.8e-132 476.5 551 45.4
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 6.9e-131 471.9 562 45.4
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 6.9e-131 471.9 554 46.0
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 9.0e-131 471.5 559 43.8
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 2.6e-130 469.9 549 45.4
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 3.4e-130 469.5 559 43.6
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 3.4e-130 469.5 549 45.0
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 1.0e-129 468.0 611 42.2
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 1.7e-129 467.2 560 44.1
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 2.2e-129 466.8 552 45.8
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 1.4e-128 464.2 561 44.4
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 3.2e-128 463.0 559 45.4
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 3.2e-128 463.0 553 42.7
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 1.2e-127 461.1 565 44.1
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 6.1e-127 458.8 553 41.6
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 1.4e-126 457.6 570 41.1
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 1.1e-125 454.5 561 43.7
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 2.6e-125 453.4 560 42.0
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 3.3e-125 453.0 565 43.4
Dinv09252 Davidia involucrata HOM05D006558 ORTHO05D008424 1.3e-124 451.1 535 46.0
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 1.7e-124 450.7 555 44.3
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 2.2e-124 450.3 568 41.5
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 9.1e-123 444.9 561 41.2
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 7.7e-122 441.8 553 43.8
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 1.9e-120 437.2 556 42.4
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 2.5e-120 436.8 383 55.9
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 4.2e-120 436.0 557 41.8
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 1.6e-119 434.1 552 41.5
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 3.0e-118 429.9 594 41.1
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 4.1e-115 419.5 553 42.3
PGSC0003DMG400031735 Solanum tuberosum HOM05D006558 ORTHO05D008424 2.3e-110 403.7 490 45.9
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 4.0e-110 402.9 556 41.5
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 6.7e-110 402.1 458 47.4
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 2.0e-109 400.6 370 52.4
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 7.5e-109 398.7 609 41.1
vmacro13739 Vaccinium macrocarpon HOM05D006558 ORTHO05D008424 2.2e-108 397.1 475 44.0
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 2.5e-104 383.6 492 44.9
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 2.0e-101 374.0 369 49.3
Gohir.A06G175900 Gossypium hirsutum HOM05D006558 ORTHO05D008424 2.6e-101 373.6 433 46.2
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 7.7e-98 362.1 551 37.7
ATR1093G023 Amborella trichopoda HOM05D006558 ORTHO05D008424 5.0e-97 359.4 541 38.1
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 1.2e-95 354.8 311 54.0
Zm00001eb143980 Zea mays HOM05D006558 ORTHO05D008424 1.0e-89 335.1 495 37.0
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 2.8e-87 327.0 295 52.9
AL908U10010 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 1.8e-83 314.3 378 44.2
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 2.4e-83 313.9 295 51.9
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 1.6e-82 311.2 476 38.2
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 6.2e-79 299.3 298 51.0
SEGI_06522 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 8.6e-65 252.3 377 38.7
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 3.8e-60 236.9 639 27.5
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 3.9e-57 226.9 637 27.3
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 8.1e-55 219.2 557 28.4
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 3.1e-54 217.2 548 28.5
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 5.8e-53 213.0 555 28.6
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 7.6e-53 212.6 555 28.6
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 6.4e-52 209.5 631 26.0
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.9e-48 198.0 514 29.4
Eucgr.H05138 Eucalyptus grandis HOM05D006558 ORTHO05D008424 8.1e-47 192.6 320 38.4
Gohir.A06G175902 Gossypium hirsutum HOM05D006558 ORTHO05D008424 1.5e-32 145.2 106 62.3
Cpa.g.sc96.48 Carica papaya HOM05D006558 ORTHO05D008424 2.8e-31 141.0 211 39.8
Cc02_g29630 Coffea canephora HOM05D006558 ORTHO05D008424 4.5e-29 133.7 127 49.6
CBR_g72661 Chara braunii HOM05D000019 ORTHO05D000353 5.8e-29 133.3 309 29.8
SEGI_00327 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 1.3e-23 115.5 117 43.6
Atru.chr11.2433 Acer truncatum HOM05D006558 ORTHO05D008424 5.3e-22 110.2 145 40.0
SGA_v2.0_scaffold2G00943 Striga asiatica HOM05D006558 ORTHO05D008424 1.4e-19 102.1 185 38.4
SEGI_36037 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 1.9e-19 101.7 263 29.3
Medtr3g019025 Medicago truncatula HOM05D006558 ORTHO05D008424 1.9e-16 91.7 57 70.2
Ca_02010_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 3.3e-16 90.9 58 69.0
DCAR_010374 Daucus carota HOM05D006558 ORTHO05D008424 9.7e-16 89.4 186 29.0
MD07G1035200 Malus domestica HOM05D006558 ORTHO05D008424 5.9e-13 80.1 126 35.7
MD07G1035100 Malus domestica HOM05D006558 ORTHO05D008424 8.5e-12 76.3 57 56.1
Rhsim12G0031700 Rhododendron simsii HOM05D000017 ORTHO05D000013 1.4e-06 58.9 50 60.0
Nn7g37167 Nelumbo nucifera HOM05D006558 ORTHO05D008424 2.4e-06 58.2 45 53.3
MBI08_g18916_MAGBIO Magnolia biondii HOM05D000017 ORTHO05D000013 3.1e-06 57.8 68 39.7
Atru.chr11.2476 Acer truncatum HOM05D006558 ORTHO05D008424 4.1e-06 57.4 39 61.5


User provided reference genes

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