Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.S6TU68 Arachis hypogaea HOM05D002034 ORTHO05D004251 6.5e-72 273.9 129 100.0
arahy.Tifrunner.gnm1.ann1.WA30K5 Arachis hypogaea HOM05D002034 ORTHO05D004251 8.3e-27 124.0 60 91.7
arahy.Tifrunner.gnm1.ann1.RZ6BDN Arachis hypogaea HOM05D002034 ORTHO05D004251 1.6e-25 119.8 60 90.0
Lalb_Chr04g0252081 Lupinus albus HOM05D002034 ORTHO05D004251 1.2e-17 93.6 61 68.9
Atru.chr3.4154 Acer truncatum HOM05D002034 ORTHO05D004251 7.8e-17 90.9 62 69.4
Lj6g0001278 Lotus japonicus HOM05D002034 ORTHO05D004251 1.3e-16 90.1 61 68.9
Ciclev10027766m.g Citrus clementina HOM05D002034 ORTHO05D004251 2.3e-16 89.4 61 68.9
HanXRQChr08g0229181 Helianthus annuus HOM05D002034 ORTHO05D004251 2.5e-15 85.9 61 62.3
Haze_24388 Corylus avellana HOM05D002034 ORTHO05D004251 4.3e-15 85.1 62 66.1
Phvul.006G072400 Phaseolus vulgaris HOM05D002034 ORTHO05D004251 4.3e-15 85.1 64 60.9
QL01p039781 Quercus lobata HOM05D002034 ORTHO05D004251 4.3e-15 85.1 63 66.7
Dinv28678 Davidia involucrata HOM05D002034 ORTHO05D004251 5.6e-15 84.7 61 63.9
Eucgr.B02225 Eucalyptus grandis HOM05D002034 ORTHO05D004251 5.6e-15 84.7 61 62.3
Cfa011748 Carpinus fangiana HOM05D002034 ORTHO05D004251 7.3e-15 84.3 62 66.1
Nn2g10970 Nelumbo nucifera HOM05D002034 ORTHO05D004251 7.3e-15 84.3 67 62.7
Ca_14990_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 9.5e-15 84.0 61 63.9
Ca_30101_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 9.5e-15 84.0 61 63.9
Glyma.18G058700 Glycine max HOM05D002034 ORTHO05D004251 9.5e-15 84.0 64 59.4
PGR102G2830 Punica granatum HOM05D002034 ORTHO05D004251 9.5e-15 84.0 61 63.9
Thecc.09G354800 Theobroma cacao HOM05D002034 ORTHO05D004251 1.2e-14 83.6 61 63.9
Glyma.11G165900 Glycine max HOM05D002034 ORTHO05D004251 1.6e-14 83.2 61 62.3
Manes.02G215950 Manihot esculenta HOM05D002034 ORTHO05D004251 1.6e-14 83.2 61 63.9
arahy.Tifrunner.gnm1.ann1.Z7E5WK Arachis hypogaea HOM05D002034 ORTHO05D004251 2.1e-14 82.8 61 63.9
MD11G1065500 Malus domestica HOM05D002034 ORTHO05D004251 2.1e-14 82.8 55 67.3
Lsat_1_v5_gn_9_18521 Lactuca sativa HOM05D002034 ORTHO05D004251 2.8e-14 82.4 61 59.0
ECA247G1661 Erigeron canadensis HOM05D002034 ORTHO05D004251 3.6e-14 82.0 67 56.7
TAR357G0005 Trochodendron aralioides HOM05D002034 ORTHO05D004251 3.6e-14 82.0 61 62.3
Lalb_Chr15g0083121 Lupinus albus HOM05D002034 ORTHO05D004251 4.7e-14 81.6 63 58.7
VMungo0647G1991 Vigna mungo HOM05D002034 ORTHO05D004251 4.7e-14 81.6 68 63.2
Aqoxy2G00822 Aquilegia oxysepala HOM05D002034 ORTHO05D004251 6.2e-14 81.3 61 60.7
arahy.Tifrunner.gnm1.ann1.H18R60 Arachis hypogaea HOM05D002034 ORTHO05D004251 6.2e-14 81.3 61 63.9
Medtr3g465600 Medicago truncatula HOM05D002034 ORTHO05D004251 6.2e-14 81.3 64 59.4
Cpa.g.sc2.386 Carica papaya HOM05D002034 ORTHO05D004251 8.0e-14 80.9 64 59.4
Gohir.A03G026800 Gossypium hirsutum HOM05D002034 ORTHO05D004251 1.1e-13 80.5 60 63.3
Gorai.003G148700 Gossypium raimondii HOM05D002034 ORTHO05D004251 1.1e-13 80.5 60 63.3
Potri.009G076000 Populus trichocarpa HOM05D002034 ORTHO05D004251 1.1e-13 80.5 61 63.9
Prupe.6G051700 Prunus persica HOM05D002034 ORTHO05D004251 1.4e-13 80.1 55 65.5
Duzib168G1938 Durio zibethinus HOM05D002034 ORTHO05D004251 1.8e-13 79.7 61 62.3
Sabra09G0057900 Salix brachista HOM05D002034 ORTHO05D004251 1.8e-13 79.7 61 63.9
Hma1.2p1_0841F.1_g226850 Hydrangea macrophylla HOM05D002034 ORTHO05D004251 4.0e-13 78.6 66 57.6
CSS0000627 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 5.2e-13 78.2 61 59.0
CSS0027541 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 5.2e-13 78.2 61 59.0
Duzib150G0116 Durio zibethinus HOM05D002034 ORTHO05D004251 5.2e-13 78.2 61 60.7
TPR.G32915 Trifolium pratense HOM05D002034 ORTHO05D004251 5.2e-13 78.2 64 56.2
Gohir.D03G141700 Gossypium hirsutum HOM05D002034 ORTHO05D004251 6.8e-13 77.8 60 61.7
CiPaw.13G072000 Carya illinoinensis HOM05D002034 ORTHO05D004251 8.9e-13 77.4 62 58.1
Sc12g0000270 Simmondsia chinensis HOM05D002034 ORTHO05D004251 8.9e-13 77.4 63 58.7
Sp6g20200 Schrenkiella parvula HOM05D002034 ORTHO05D004251 1.5e-12 76.6 65 53.8
Aa31LG11G290 Aethionema arabicum HOM05D002034 ORTHO05D004251 2.0e-12 76.3 65 53.8
Nitab4.5_0001469g0010 Nicotiana tabacum HOM05D002034 ORTHO05D004251 2.0e-12 76.3 66 57.6
PSO339G3538 Papaver somniferum HOM05D002034 ORTHO05D004251 2.0e-12 76.3 61 55.7
Ah.15g096260 Amaranthus hybridus HOM05D002034 ORTHO05D004251 2.6e-12 75.9 61 57.4
TWI31G1212 Tripterygium wilfordii HOM05D002034 ORTHO05D004251 2.6e-12 75.9 61 59.0
TAR369G0522 Trochodendron aralioides HOM05D002034 ORTHO05D004251 2.6e-12 75.9 67 58.2
PSO801G0069 Papaver somniferum HOM05D002034 ORTHO05D004251 3.4e-12 75.5 61 54.1
Psat5g155480 Pisum sativum HOM05D002034 ORTHO05D004251 3.4e-12 75.5 64 54.7
COL.COLO4_11121 Corchorus olitorius HOM05D002034 ORTHO05D004251 5.8e-12 74.7 67 59.7
Sed0002046 Sechium edule HOM05D002034 ORTHO05D004251 5.8e-12 74.7 61 57.4
THA.LOC104799388 Tarenaya hassleriana HOM05D002034 ORTHO05D004251 5.8e-12 74.7 65 52.3
GSVIVG01024678001 Vitis vinifera HOM05D002034 ORTHO05D004251 5.8e-12 74.7 61 60.7
Rhsim13G0065900 Rhododendron simsii HOM05D002034 ORTHO05D004251 7.5e-12 74.3 61 59.0
Nitab4.5_0001115g0080 Nicotiana tabacum HOM05D002034 ORTHO05D004251 9.8e-12 73.9 61 59.0
SHI19193 Sapria himalayana HOM05D002034 ORTHO05D004251 9.8e-12 73.9 60 56.7
BolC3t13874H Brassica oleracea HOM05D002034 ORTHO05D004251 1.3e-11 73.6 65 50.8
RcHm_v2.0_Chr5g0070931 Rosa chinensis HOM05D002034 ORTHO05D004251 1.3e-11 73.6 55 61.8
AUR62009695 Chenopodium quinoa HOM05D002034 ORTHO05D004251 2.2e-11 72.8 61 55.7
AUR62036251 Chenopodium quinoa HOM05D002034 ORTHO05D004251 2.9e-11 72.4 61 55.7
AUR62036252 Chenopodium quinoa HOM05D002034 ORTHO05D004251 2.9e-11 72.4 61 55.7
Thhalv10012586m.g Eutrema salsugineum HOM05D002034 ORTHO05D004251 2.9e-11 72.4 65 52.3
AL8G34750 Arabidopsis lyrata HOM05D002034 ORTHO05D004251 3.7e-11 72.0 65 50.8
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 4.9e-11 71.6 65 50.8
C09p50470 Brassica napus HOM05D002034 ORTHO05D004251 4.9e-11 71.6 65 50.8
BolC9t57903H Brassica oleracea HOM05D002034 ORTHO05D004251 4.9e-11 71.6 65 50.8
BraA10t43651Z Brassica rapa HOM05D002034 ORTHO05D004251 4.9e-11 71.6 65 50.8
Cc01_g14670 Coffea canephora HOM05D002034 ORTHO05D004251 4.9e-11 71.6 61 57.4
Nitab4.5_0006148g0070 Nicotiana tabacum HOM05D002034 ORTHO05D004251 4.9e-11 71.6 63 55.6
AT5G58510 Arabidopsis thaliana HOM05D002034 ORTHO05D004251 6.4e-11 71.2 65 50.8
MSTRG.8115 Avicennia marina HOM05D002034 ORTHO05D004251 6.4e-11 71.2 61 50.8
vmacro02935 Vaccinium macrocarpon HOM05D002034 ORTHO05D004251 6.4e-11 71.2 61 59.0
MELO3C020522.2 Cucumis melo HOM05D002034 ORTHO05D004251 8.3e-11 70.9 61 55.7
Gohir.A13G234000 Gossypium hirsutum HOM05D002034 ORTHO05D004251 8.3e-11 70.9 61 57.4
Gohir.D13G239600 Gossypium hirsutum HOM05D002034 ORTHO05D004251 8.3e-11 70.9 61 57.4
Gorai.013G270500 Gossypium raimondii HOM05D002034 ORTHO05D004251 8.3e-11 70.9 61 57.4
Actinidia23213 Actinidia chinensis HOM05D002034 ORTHO05D004251 1.1e-10 70.5 61 57.4
CAN.G1095.17 Capsicum annuum HOM05D002034 ORTHO05D004251 1.1e-10 70.5 64 54.7
FvH4_3g39400 Fragaria vesca HOM05D002034 ORTHO05D004251 1.9e-10 69.7 55 58.2
FAN11G3897 Fragaria x ananassa HOM05D002034 ORTHO05D004251 1.9e-10 69.7 55 58.2
FAN16G1479 Fragaria x ananassa HOM05D002034 ORTHO05D004251 1.9e-10 69.7 55 58.2
FAN25G3060 Fragaria x ananassa HOM05D002034 ORTHO05D004251 1.9e-10 69.7 55 58.2
ATR0174G009 Amborella trichopoda HOM05D002034 ORTHO05D004251 2.4e-10 69.3 62 54.8
Carub.0008s1910 Capsella rubella HOM05D002034 ORTHO05D004251 2.4e-10 69.3 65 49.2
ClCG03G000460 Citrullus lanatus HOM05D002034 ORTHO05D004251 2.4e-10 69.3 61 55.7
Nitab4.5_0004155g0040 Nicotiana tabacum HOM05D002034 ORTHO05D004251 2.4e-10 69.3 63 54.0
Solyc06g082200.4 Solanum lycopersicum HOM05D002034 ORTHO05D004251 3.2e-10 68.9 64 53.1
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 4.1e-10 68.6 65 50.8
C03p14280 Brassica napus HOM05D002034 ORTHO05D004251 4.1e-10 68.6 65 50.8
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 4.1e-10 68.6 65 50.8
CsaV3_1G036460 Cucumis sativus L. HOM05D002034 ORTHO05D004251 4.1e-10 68.6 61 54.1
Sopen06g033580 Solanum pennellii HOM05D002034 ORTHO05D004251 4.1e-10 68.6 64 53.1
EL10Ac7g15893 Beta vulgaris HOM05D002034 ORTHO05D004251 7.0e-10 67.8 62 51.6
Peaxi162Scf00808g00111 Petunia axillaris HOM05D002034 ORTHO05D004251 9.2e-10 67.4 61 55.7
DCAR_018219 Daucus carota HOM05D002034 ORTHO05D004251 1.2e-09 67.0 61 55.7
CANSAT54G3012 Cannabis sativa HOM05D002034 ORTHO05D004251 1.6e-09 66.6 61 50.8
Hund18961 Selenicereus undatus HOM05D002034 ORTHO05D004251 2.7e-09 65.9 61 49.2
Peaxi162Scf00390g00823 Petunia axillaris HOM05D002034 ORTHO05D004251 3.5e-09 65.5 70 48.6
unitig_736.g22533 Utricularia gibba HOM05D002034 ORTHO05D004251 6.0e-09 64.7 46 63.0
BcaB08g36187 Brassica carinata HOM05D002034 ORTHO05D004251 1.1e-07 60.5 66 43.9
arahy.Tifrunner.gnm1.ann1.A2LLI3 Arachis hypogaea HOM05D000315 ORTHO05D004251 4.3e-07 58.5 64 48.4
CDE08G0674 Ceratophyllum demersum HOM05D002034 ORTHO05D004251 2.1e-06 56.2 61 44.3
HPP92_012023 Vanilla planifolia HOM05D002034 ORTHO05D004251 4.7e-06 55.1 63 47.6


User provided reference genes

Program Settings