Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.S6BLSS Arachis hypogaea HOM05D006730 ORTHO05D008189 0.0e+00 1218.4 631 100.0
arahy.Tifrunner.gnm1.ann1.PF62HI Arachis hypogaea HOM05D006730 ORTHO05D008189 0.0e+00 1131.3 628 93.8
Phvul.011G201600 Phaseolus vulgaris HOM05D006730 ORTHO05D008189 1.8e-175 620.2 693 53.5
Glyma.12G050000 Glycine max HOM05D006730 ORTHO05D008189 3.3e-169 599.4 693 52.5
VMungo0720G0522 Vigna mungo HOM05D006730 ORTHO05D008189 1.7e-165 587.0 690 52.0
Lj3g0015132 Lotus japonicus HOM05D006730 ORTHO05D008189 2.7e-163 579.7 642 53.7
TPR.G34183 Trifolium pratense HOM05D006730 ORTHO05D008189 1.6e-155 553.9 688 50.1
VMungo0647G1321 Vigna mungo HOM05D006730 ORTHO05D008189 1.8e-154 550.4 683 49.9
Lalb_Chr03g0025971 Lupinus albus HOM05D006730 ORTHO05D008189 1.2e-150 537.7 678 47.6
Lalb_Chr03g0026031 Lupinus albus HOM05D006730 ORTHO05D008189 1.2e-150 537.7 678 47.6
Psat7g208760 Pisum sativum HOM05D006730 ORTHO05D008189 5.8e-150 535.4 676 48.4
Ca_03751_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 1.7e-149 533.9 688 49.0
Medtr4g068005 Medicago truncatula HOM05D006730 ORTHO05D008189 2.3e-146 523.5 655 50.1
Ca_07546_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 1.6e-139 500.7 652 48.8
Cfa015217 Carpinus fangiana HOM05D006730 ORTHO05D008189 8.5e-133 478.4 707 42.7
Prupe.8G045700 Prunus persica HOM05D006730 ORTHO05D008189 4.2e-124 449.5 657 42.3
QL10p052118 Quercus lobata HOM05D006730 ORTHO05D008189 1.7e-112 411.0 704 39.2
Duzib151G0982 Durio zibethinus HOM05D006730 ORTHO05D008189 3.1e-111 406.8 645 41.2
Sed0020880 Sechium edule HOM05D006730 ORTHO05D008189 9.1e-111 405.2 692 39.2
Thecc.04G171700 Theobroma cacao HOM05D006730 ORTHO05D008189 9.4e-108 395.2 651 40.2
Haze_01419 Corylus avellana HOM05D006730 ORTHO05D008189 3.6e-107 393.3 640 39.4
MD04G1046800 Malus domestica HOM05D006730 ORTHO05D008189 8.0e-107 392.1 659 39.5
CsaV3_7G002050 Cucumis sativus L. HOM05D006730 ORTHO05D008189 4.0e-106 389.8 671 39.0
Manes.04G048400 Manihot esculenta HOM05D006730 ORTHO05D008189 2.2e-104 384.0 686 38.5
MELO3C015702.2 Cucumis melo HOM05D006730 ORTHO05D008189 2.8e-104 383.6 668 39.5
TAR633G1963 Trochodendron aralioides HOM05D006730 ORTHO05D008189 7.0e-103 379.0 643 38.6
TAR633G0487 Trochodendron aralioides HOM05D006730 ORTHO05D008189 1.6e-102 377.9 643 38.4
CANSAT56G2182 Cannabis sativa HOM05D006730 ORTHO05D008189 6.5e-101 372.5 644 39.0
Gohir.D02G011000 Gossypium hirsutum HOM05D006730 ORTHO05D008189 3.2e-100 370.2 641 37.9
Ciclev10019155m.g Citrus clementina HOM05D006730 ORTHO05D008189 1.2e-99 368.2 672 38.1
Cpa.g.sc9.329 Carica papaya HOM05D006730 ORTHO05D008189 1.6e-99 367.9 689 37.4
Gorai.005G013400 Gossypium raimondii HOM05D006730 ORTHO05D008189 3.6e-99 366.7 641 37.8
COL.COLO4_28380 Corchorus olitorius HOM05D006730 ORTHO05D008189 1.8e-98 364.4 633 38.7
Potri.017G018300 Populus trichocarpa HOM05D006730 ORTHO05D008189 4.4e-97 359.8 659 37.6
CiPaw.01G173600 Carya illinoinensis HOM05D006730 ORTHO05D008189 1.3e-96 358.2 669 37.5
ClCG09G018880 Citrullus lanatus HOM05D006730 ORTHO05D008189 1.1e-95 355.1 638 37.9
Sc19g0000330 Simmondsia chinensis HOM05D006730 ORTHO05D008189 1.8e-95 354.4 701 35.0
Nn1g09713 Nelumbo nucifera HOM05D006730 ORTHO05D008189 9.1e-95 352.1 648 37.7
Sabra17G0012500 Salix brachista HOM05D006730 ORTHO05D008189 1.3e-93 348.2 660 36.8
Eucgr.A00038 Eucalyptus grandis HOM05D006730 ORTHO05D008189 1.9e-92 344.4 683 36.9
GSVIVG01038091001 Vitis vinifera HOM05D006730 ORTHO05D008189 1.2e-91 341.7 590 38.0
Actinidia27097 Actinidia chinensis HOM05D006730 ORTHO05D008189 6.1e-91 339.3 711 35.4
FAN26G1825 Fragaria x ananassa HOM05D006730 ORTHO05D008189 2.0e-89 334.3 665 37.1
FvH4_1g27220 Fragaria vesca HOM05D006730 ORTHO05D008189 3.4e-89 333.6 670 36.3
Atru.chr4.1340 Acer truncatum HOM05D006730 ORTHO05D008189 4.4e-89 333.2 675 35.3
AL7G49300 Arabidopsis lyrata HOM05D006730 ORTHO05D008189 5.7e-89 332.8 689 34.4
PGR102G2296 Punica granatum HOM05D006730 ORTHO05D008189 1.7e-88 331.3 678 35.3
TWI15G0430 Tripterygium wilfordii HOM05D006730 ORTHO05D008189 2.4e-87 327.4 661 35.6
Sabra06G0076300 Salix brachista HOM05D006730 ORTHO05D008189 3.2e-87 327.0 637 35.8
FAN19G2476 Fragaria x ananassa HOM05D006730 ORTHO05D008189 9.2e-87 325.5 664 35.8
Aa31LG1G25250 Aethionema arabicum HOM05D006730 ORTHO05D008189 1.7e-85 321.2 675 34.1
RcHm_v2.0_Chr3g0487611 Rosa chinensis HOM05D006730 ORTHO05D008189 5.0e-85 319.7 667 36.3
Carub.0007s3500 Capsella rubella HOM05D006730 ORTHO05D008189 3.3e-84 317.0 694 33.9
A05p16170 Brassica napus HOM05D006730 ORTHO05D008189 3.6e-83 313.5 653 35.2
BcaB02g08030 Brassica carinata HOM05D006730 ORTHO05D008189 4.7e-83 313.2 660 34.7
BraA05t20528Z Brassica rapa HOM05D006730 ORTHO05D008189 4.7e-83 313.2 652 35.1
Sp7g05120 Schrenkiella parvula HOM05D006730 ORTHO05D008189 8.0e-83 312.4 680 34.3
THA.LOC104805724 Tarenaya hassleriana HOM05D006730 ORTHO05D008189 1.5e-81 308.1 680 34.3
Oeu002416.1 Olea europaea HOM05D006730 ORTHO05D008189 7.5e-81 305.8 715 32.0
BcaC08g44345 Brassica carinata HOM05D006730 ORTHO05D008189 1.3e-80 305.1 640 34.2
C06p17830 Brassica napus HOM05D006730 ORTHO05D008189 1.9e-79 301.2 677 33.2
Gohir.A02G010500 Gossypium hirsutum HOM05D006730 ORTHO05D008189 1.6e-78 298.1 410 42.0
BolC6t36977H Brassica oleracea HOM05D006730 ORTHO05D008189 2.7e-78 297.4 658 34.2
vmacro21172 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 4.6e-78 296.6 726 32.9
AT5G40520 Arabidopsis thaliana HOM05D006730 ORTHO05D008189 3.0e-77 293.9 693 32.0
TAR633G2319 Trochodendron aralioides HOM05D006730 ORTHO05D008189 5.2e-74 283.1 464 39.7
Lj3A110T20 Lonicera japonica HOM05D006730 ORTHO05D008189 1.5e-73 281.6 603 35.2
MSTRG.27276 Avicennia marina HOM05D006730 ORTHO05D008189 4.4e-73 280.0 686 33.7
AUR62005936 Chenopodium quinoa HOM05D006730 ORTHO05D008189 9.8e-73 278.9 655 32.2
Dinv05091 Davidia involucrata HOM05D006730 ORTHO05D008189 1.9e-71 274.6 538 36.8
Lsat_1_v5_gn_5_69460 Lactuca sativa HOM05D006730 ORTHO05D008189 5.4e-71 273.1 581 34.6
vmacro00655 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 9.2e-71 272.3 649 33.1
CARHR138600 Cardamine hirsuta HOM05D006730 ORTHO05D008189 1.6e-70 271.6 581 33.6
AUR62028127 Chenopodium quinoa HOM05D006730 ORTHO05D008189 3.9e-69 266.9 646 31.1
Thhalv10027675m.g Eutrema salsugineum HOM05D006730 ORTHO05D008189 1.1e-68 265.4 656 32.5
Hma1.2p1_0324F.1_g125720 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 4.4e-65 253.4 520 38.3
Hma1.2p1_3037F.1_g331960 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 3.7e-64 250.4 520 37.7
MBI11_g10487_MAGBIO Magnolia biondii HOM05D006730 ORTHO05D008189 2.4e-63 247.7 584 32.7
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 1.2e-62 245.4 561 33.7
EL10Ac9g22987 Beta vulgaris HOM05D006730 ORTHO05D008189 1.6e-62 245.0 694 30.3
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 2.7e-62 244.2 642 31.8
SGA_v2.0_scaffold94G28623 Striga asiatica HOM05D006730 ORTHO05D008189 6.0e-62 243.0 642 31.2
Solyc06g073160.4 Solanum lycopersicum HOM05D006730 ORTHO05D008189 1.6e-59 235.0 716 30.4
Sopen06g029510 Solanum pennellii HOM05D006730 ORTHO05D008189 2.8e-59 234.2 721 30.9
Oeu029987.1 Olea europaea HOM05D006730 ORTHO05D008189 4.7e-59 233.4 680 28.8
SHI01154 Sapria himalayana HOM05D006730 ORTHO05D008189 2.4e-58 231.1 523 33.8
Nitab4.5_0001210g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 3.4e-57 227.3 728 29.8
Hund25530 Selenicereus undatus HOM05D006730 ORTHO05D008189 3.4e-57 227.3 542 32.5
PGSC0003DMG400026917 Solanum tuberosum HOM05D006730 ORTHO05D008189 2.9e-56 224.2 712 31.0
ATR0743G243 Amborella trichopoda HOM05D006730 ORTHO05D008189 1.1e-55 222.2 637 30.3
Nitab4.5_0001586g0210 Nicotiana tabacum HOM05D006730 ORTHO05D008189 7.1e-55 219.5 649 30.5
Cc03_g12540 Coffea canephora HOM05D006730 ORTHO05D008189 2.7e-54 217.6 668 30.4
HanXRQChr17g0565921 Helianthus annuus HOM05D006730 ORTHO05D008189 1.0e-53 215.7 562 32.9
Nitab4.5_0002782g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 1.3e-53 215.3 712 29.1
CSS0011413 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 1.7e-53 214.9 286 44.1
Peaxi162Scf00180g00519 Petunia axillaris HOM05D006730 ORTHO05D008189 8.7e-53 212.6 640 31.6
SGA_v2.0_scaffold36G14479 Striga asiatica HOM05D000061 ORTHO05D008189 3.4e-49 200.7 626 30.2
CDE07G0581 Ceratophyllum demersum HOM05D006730 ORTHO05D008189 1.3e-45 188.7 644 27.6
CSS0007333 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 7.6e-41 172.9 282 40.1
Zm00001eb184290 Zea mays HOM05D006730 ORTHO05D008189 1.8e-37 161.8 651 26.4
DCAR_027052 Daucus carota HOM05D006730 ORTHO05D008189 2.4e-34 151.4 336 33.3
FAN23G1889 Fragaria x ananassa HOM05D006730 ORTHO05D008189 3.1e-34 151.0 487 30.6
FAN28G2072 Fragaria x ananassa HOM05D006730 ORTHO05D008189 2.6e-33 147.9 349 34.7
Ah.10g027080 Amaranthus hybridus HOM05D006730 ORTHO05D008189 7.9e-30 136.3 341 30.8
Os09g0103200 Oryza sativa ssp. japonica HOM05D006730 ORTHO05D008189 4.1e-26 124.0 583 24.9
FAN28G2984 Fragaria x ananassa HOM05D006730 ORTHO05D008189 3.4e-25 120.9 314 31.8
PSO017G5839 Papaver somniferum HOM05D006730 ORTHO05D008189 6.1e-22 110.2 556 24.5
HPP92_022486 Vanilla planifolia HOM05D001064 ORTHO05D000885 6.5e-16 90.1 375 23.7
unitig_26.g9736 Utricularia gibba HOM05D006730 ORTHO05D006349 8.5e-16 89.7 440 25.2
Ah.10g027090 Amaranthus hybridus HOM05D006730 ORTHO05D008189 4.8e-11 73.9 183 35.0
Actinidia26680 Actinidia chinensis HOM05D006730 ORTHO05D008189 1.4e-10 72.4 99 41.4
HanXRQChr12g0385981 Helianthus annuus HOM05D006730 ORTHO05D008189 4.5e-09 67.4 111 41.4
PSO063G4508 Papaver somniferum HOM05D006730 ORTHO05D008189 8.5e-08 63.2 338 24.3
Gohir.A02G010550 Gossypium hirsutum HOM05D006730 ORTHO05D008189 2.1e-06 58.5 92 37.0


User provided reference genes

Program Settings