Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 1.3e-90 336.3 160 100.0
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 1.3e-90 336.3 160 100.0
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 4.2e-89 331.3 160 98.8
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 2.1e-88 328.9 160 98.1
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 4.7e-72 274.6 160 80.0
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 4.0e-71 271.6 159 77.4
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 6.8e-71 270.8 160 78.8
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 2.0e-70 269.2 160 77.5
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 7.5e-70 267.3 160 76.9
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 2.9e-69 265.4 165 76.4
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 3.7e-69 265.0 165 76.4
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 3.7e-69 265.0 165 77.0
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 1.1e-68 263.5 165 75.2
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 1.9e-68 262.7 165 75.2
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 4.1e-68 261.5 165 75.2
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 4.1e-68 261.5 165 75.2
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 1.6e-67 259.6 160 76.9
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 2.7e-67 258.8 165 74.5
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 2.7e-67 258.8 160 73.8
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 2.7e-67 258.8 164 75.6
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 3.5e-67 258.5 160 76.2
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 3.5e-67 258.5 165 73.9
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 4.6e-67 258.1 160 75.6
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 4.6e-67 258.1 165 73.9
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 4.6e-67 258.1 165 72.7
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 7.8e-67 257.3 165 73.3
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.0e-66 256.9 160 74.4
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 1.7e-66 256.1 165 72.7
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 2.3e-66 255.8 143 82.5
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 2.3e-66 255.8 165 74.5
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 2.3e-66 255.8 165 75.2
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 3.0e-66 255.4 160 75.6
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 6.6e-66 254.2 160 73.8
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 6.6e-66 254.2 165 75.2
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 6.6e-66 254.2 143 81.1
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 1.1e-65 253.4 165 73.3
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 1.1e-65 253.4 165 72.7
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 1.1e-65 253.4 165 72.7
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 1.5e-65 253.1 143 81.8
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 1.5e-65 253.1 160 71.2
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 2.5e-65 252.3 165 73.9
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 4.3e-65 251.5 165 72.1
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 4.3e-65 251.5 145 78.6
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 9.5e-65 250.4 142 81.7
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 2.8e-64 248.8 165 71.5
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 2.8e-64 248.8 144 76.4
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 6.2e-64 247.7 144 75.7
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 6.2e-64 247.7 160 73.1
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 8.0e-64 247.3 161 72.7
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 1.1e-63 246.9 143 79.0
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.4e-63 246.5 160 73.1
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 1.4e-63 246.5 165 70.9
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 2.3e-63 245.7 143 76.2
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 4.0e-63 245.0 165 71.5
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 5.2e-63 244.6 139 79.1
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 6.8e-63 244.2 143 76.2
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 6.8e-63 244.2 161 70.8
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 6.8e-63 244.2 159 70.4
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 8.9e-63 243.8 143 77.6
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 1.2e-62 243.4 161 70.8
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 2.0e-62 242.7 165 69.7
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 3.4e-62 241.9 143 76.9
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 3.4e-62 241.9 142 75.4
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 4.4e-62 241.5 143 74.1
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 4.4e-62 241.5 143 75.5
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 4.4e-62 241.5 143 75.5
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 7.5e-62 240.7 142 74.6
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 2.2e-61 239.2 142 76.8
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 3.7e-61 238.4 143 74.1
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 4.9e-61 238.0 143 76.9
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 6.4e-61 237.7 165 67.9
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 8.3e-61 237.3 165 67.9
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 1.4e-60 236.5 142 76.1
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 1.9e-60 236.1 160 70.0
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 3.2e-60 235.3 145 75.2
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 5.4e-60 234.6 165 67.3
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 7.0e-60 234.2 161 66.5
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 7.0e-60 234.2 165 66.1
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 7.0e-60 234.2 165 66.1
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 2.1e-59 232.6 165 65.5
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 2.1e-59 232.6 165 66.1
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 3.5e-59 231.9 165 65.5
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 3.5e-59 231.9 165 65.5
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 4.6e-59 231.5 165 65.5
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 7.8e-59 230.7 165 68.5
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 7.8e-59 230.7 140 72.9
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 1.0e-58 230.3 165 64.8
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 1.7e-58 229.6 143 72.0
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 1.7e-58 229.6 143 72.0
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 2.3e-58 229.2 165 64.8
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 2.3e-58 229.2 165 64.2
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 3.9e-58 228.4 165 63.6
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 3.9e-58 228.4 160 65.6
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 5.1e-58 228.0 137 73.7
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 6.6e-58 227.6 146 72.6
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 8.6e-58 227.3 165 64.2
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 1.5e-57 226.5 143 69.2
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 1.5e-57 226.5 143 69.2
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 5.6e-57 224.6 165 66.7
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 1.2e-56 223.4 143 67.8
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 1.2e-56 223.4 157 67.5
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 2.8e-56 222.2 159 66.0
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 3.6e-56 221.9 143 68.5
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 3.6e-56 221.9 140 72.1
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 1.1e-55 220.3 143 68.5
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 1.4e-55 219.9 165 65.5
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 2.3e-55 219.2 124 80.6
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 6.8e-55 217.6 145 68.3
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 2.0e-54 216.1 165 63.0
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 1.3e-53 213.4 162 66.0
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 2.9e-53 212.2 139 69.1
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 2.9e-53 212.2 136 69.1
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 1.4e-52 209.9 157 62.4
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 9.2e-52 207.2 166 62.0
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 1.5e-49 199.9 115 78.3
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 6.0e-43 177.9 159 52.8
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 1.7e-42 176.4 165 54.5
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 8.7e-42 174.1 123 67.5
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 3.3e-41 172.2 159 50.9
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 2.1e-40 169.5 143 58.7
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 3.6e-40 168.7 124 65.3
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 3.4e-38 162.2 104 71.2
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 3.4e-38 162.2 165 53.9
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 1.3e-37 160.2 123 60.2
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 4.2e-36 155.2 145 52.4
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 1.1e-33 147.1 166 47.6
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 1.1e-33 147.1 127 55.9
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 2.5e-33 146.0 158 48.1
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 1.6e-32 143.3 178 48.9
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 2.8e-32 142.5 178 48.9
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 6.2e-32 141.4 165 47.3
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 1.9e-28 129.8 90 67.8
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 3.2e-28 129.0 166 44.0
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 2.1e-27 126.3 167 41.3
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 5.6e-25 118.2 130 49.2
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 2.6e-22 109.4 67 76.1
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 1.8e-18 96.7 141 37.6
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 5.8e-14 81.6 61 59.0
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 3.2e-12 75.9 62 61.3
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 1.6e-11 73.6 53 60.4
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 6.7e-10 68.2 119 31.1
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.9e-09 66.6 58 55.2
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 1.3e-08 63.9 48 54.2
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 9.0e-07 57.8 99 34.3


User provided reference genes

Program Settings