Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 2.3e-160 568.9 302 100.0
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 2.1e-158 562.4 301 98.7
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 7.9e-129 464.2 299 82.9
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 8.7e-128 460.7 290 85.9
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 2.2e-126 456.1 301 82.1
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 2.8e-126 455.7 300 81.7
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 9.0e-125 450.7 300 81.3
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 4.5e-124 448.4 296 80.4
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 1.9e-122 443.0 300 80.3
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 3.0e-120 435.6 295 77.3
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 5.1e-120 434.9 296 76.4
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 5.1e-120 434.9 301 80.4
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 2.5e-119 432.6 296 78.0
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 2.5e-119 432.6 296 77.7
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 2.5e-119 432.6 295 78.0
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 3.3e-119 432.2 264 84.1
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 9.7e-119 430.6 272 83.5
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 9.7e-119 430.6 301 80.7
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 2.2e-118 429.5 296 77.4
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 2.2e-118 429.5 296 77.4
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 2.8e-118 429.1 295 77.6
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 2.8e-118 429.1 296 75.7
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 1.4e-117 426.8 296 76.7
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 9.1e-117 424.1 300 75.7
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.6e-116 422.5 300 75.3
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 1.0e-115 420.6 300 75.7
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 2.2e-115 419.5 288 77.1
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 3.8e-115 418.7 289 77.2
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 5.0e-115 418.3 296 77.0
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.1e-114 417.2 301 74.8
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 1.1e-114 417.2 296 75.7
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 1.1e-114 417.2 294 74.8
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 1.9e-114 416.4 294 76.2
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 1.9e-114 416.4 294 76.2
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 1.9e-114 416.4 296 75.7
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 2.5e-114 416.0 293 76.1
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 2.5e-114 416.0 270 78.5
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 3.2e-114 415.6 301 74.8
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 3.2e-114 415.6 301 74.8
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 3.2e-114 415.6 296 75.3
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 7.2e-114 414.5 294 75.2
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 7.2e-114 414.5 295 76.6
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 9.4e-114 414.1 298 75.5
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 9.4e-114 414.1 298 75.5
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.2e-113 413.7 300 73.0
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 1.6e-113 413.3 297 74.7
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 2.1e-113 412.9 298 74.2
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 2.7e-113 412.5 296 73.6
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 2.7e-113 412.5 290 76.6
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 4.7e-113 411.8 291 75.3
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 6.1e-113 411.4 298 73.5
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 6.1e-113 411.4 293 75.1
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 6.1e-113 411.4 300 73.3
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 7.9e-113 411.0 296 73.3
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 1.0e-112 410.6 302 74.2
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 1.4e-112 410.2 296 74.7
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 3.0e-112 409.1 296 73.6
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 3.9e-112 408.7 296 74.3
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 5.1e-112 408.3 294 74.5
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 8.8e-112 407.5 300 73.3
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 2.0e-111 406.4 299 75.3
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 5.7e-111 404.8 292 74.0
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 7.4e-111 404.4 297 73.7
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 9.7e-111 404.1 292 74.3
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 1.3e-110 403.7 292 75.3
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 2.8e-110 402.5 291 75.6
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 4.1e-109 398.7 296 73.3
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 1.2e-108 397.1 298 71.5
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 2.6e-108 396.0 299 71.9
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 3.5e-108 395.6 297 71.4
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 4.5e-108 395.2 238 82.4
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 7.7e-108 394.4 296 72.0
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 2.2e-107 392.9 296 71.6
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 3.8e-107 392.1 294 73.5
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 5.0e-107 391.7 297 70.7
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 6.5e-107 391.3 297 72.1
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 1.1e-106 390.6 241 80.9
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 1.5e-106 390.2 305 68.5
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 1.5e-106 390.2 297 71.4
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 3.2e-106 389.0 293 71.0
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 7.2e-106 387.9 361 61.8
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 7.2e-106 387.9 292 71.2
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 9.4e-106 387.5 291 75.3
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 9.4e-106 387.5 326 67.2
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 1.2e-105 387.1 294 73.8
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 3.6e-105 385.6 292 70.5
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 1.4e-104 383.6 301 68.8
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 1.4e-104 383.6 300 70.0
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 3.0e-104 382.5 310 67.4
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 6.7e-104 381.3 242 77.7
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 2.0e-103 379.8 288 72.6
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 4.4e-103 378.6 299 73.2
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 7.4e-103 377.9 249 75.1
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 1.7e-102 376.7 247 76.5
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 1.7e-102 376.7 247 75.3
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 1.7e-102 376.7 247 75.3
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 2.8e-102 375.9 301 67.4
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 6.3e-102 374.8 303 68.6
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 8.2e-102 374.4 277 72.9
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 8.2e-102 374.4 277 72.9
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 3.1e-101 372.5 300 66.3
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 3.1e-101 372.5 300 66.3
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 5.3e-101 371.7 319 65.2
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 2.0e-100 369.8 269 69.5
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 2.6e-100 369.4 238 78.6
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 5.9e-100 368.2 293 67.2
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 1.3e-99 367.1 242 77.3
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 1.3e-99 367.1 345 60.3
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 1.7e-99 366.7 296 66.2
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 1.7e-99 366.7 292 66.4
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 1.7e-99 366.7 234 79.1
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 2.9e-99 365.9 345 60.3
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 6.5e-99 364.8 297 68.4
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 1.9e-98 363.2 293 66.2
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 1.9e-98 363.2 293 67.6
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 1.9e-98 363.2 244 73.4
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 2.3e-96 356.3 266 70.3
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 3.0e-96 355.9 226 78.3
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 1.5e-95 353.6 358 58.9
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 4.4e-95 352.1 229 76.4
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 1.3e-94 350.5 297 65.0
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 1.4e-93 347.1 294 65.3
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 1.2e-92 344.0 272 69.5
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 2.9e-91 339.3 223 77.1
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 6.5e-91 338.2 329 60.5
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 7.2e-90 334.7 296 64.2
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 8.8e-88 327.8 301 63.5
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 2.6e-87 326.2 198 83.3
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 8.3e-86 321.2 232 73.3
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 1.2e-81 307.4 218 72.5
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 1.2e-81 307.4 248 63.3
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 2.3e-80 303.1 266 59.8
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 3.0e-80 302.8 232 73.7
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 3.0e-80 302.8 225 67.6
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 2.0e-79 300.1 184 81.5
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 9.8e-79 297.7 233 69.1
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 3.7e-78 295.8 294 58.2
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 4.6e-76 288.9 201 69.2
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 7.3e-74 281.6 267 63.7
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 1.2e-71 274.2 268 61.6
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 5.6e-66 255.4 198 67.2
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 1.8e-64 250.4 188 72.9
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 3.2e-61 239.6 270 49.3
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 1.4e-56 224.2 214 52.8
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 4.3e-50 202.6 151 68.2
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 5.6e-50 202.2 241 49.0
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 1.2e-47 194.5 183 59.0
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 6.2e-41 172.2 163 58.9
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 1.7e-38 164.1 216 42.6
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 1.7e-22 110.9 70 81.4
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 7.1e-21 105.5 63 85.7
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 2.1e-20 104.0 83 69.9
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 3.3e-18 96.7 159 45.9
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 1.9e-13 80.9 116 44.0
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 1.3e-11 74.7 75 50.7
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 9.7e-10 68.6 47 74.5
Oeu037167.1 Olea europaea HOM05D004655 ORTHO05D005567 8.5e-06 55.5 28 85.7


User provided reference genes

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