Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.S21HCY Arachis hypogaea HOM05D004752 ORTHO05D005523 6.0e-46 187.2 97 100.0
arahy.Tifrunner.gnm1.ann1.0CG85F Arachis hypogaea HOM05D004752 ORTHO05D005523 2.3e-45 185.3 97 99.0
Lj5g0024701 Lotus japonicus HOM05D004752 ORTHO05D005523 3.1e-34 148.3 99 79.8
Lalb_Chr19g0129031 Lupinus albus HOM05D004752 ORTHO05D005523 5.3e-34 147.5 98 81.6
Lalb_Chr03g0036521 Lupinus albus HOM05D004752 ORTHO05D005523 1.5e-33 146.0 98 80.6
Lj6g0009552 Lotus japonicus HOM05D004752 ORTHO05D005523 2.6e-33 145.2 99 82.8
Glyma.20G068500 Glycine max HOM05D004752 ORTHO05D005523 3.4e-33 144.8 99 80.8
Glyma.10G117300 Glycine max HOM05D004752 ORTHO05D005523 4.5e-33 144.4 99 80.8
Phvul.007G240400 Phaseolus vulgaris HOM05D004752 ORTHO05D005523 1.7e-32 142.5 98 81.6
TPR.G20783 Trifolium pratense HOM05D004752 ORTHO05D005523 1.7e-32 142.5 99 80.8
Atru.chr13.2410 Acer truncatum HOM05D004752 ORTHO05D005523 3.8e-32 141.4 98 77.6
Medtr1g048960 Medicago truncatula HOM05D004752 ORTHO05D005523 3.8e-32 141.4 99 80.8
Lalb_Chr01g0010501 Lupinus albus HOM05D004752 ORTHO05D005523 6.4e-32 140.6 98 77.6
TAR628G0740 Trochodendron aralioides HOM05D004752 ORTHO05D005523 6.4e-32 140.6 98 76.5
Ca_21523_v3 Cicer arietinum L. HOM05D004752 ORTHO05D005523 2.4e-31 138.7 98 78.6
Ciclev10002954m.g Citrus clementina HOM05D004752 ORTHO05D005523 4.2e-31 137.9 98 73.5
THA.LOC104809736 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 1.6e-30 136.0 99 74.7
BcaC08g46647 Brassica carinata HOM05D004752 ORTHO05D005523 2.1e-30 135.6 99 72.7
BcaC08g46651 Brassica carinata HOM05D004752 ORTHO05D005523 2.1e-30 135.6 99 72.7
BcaC08g46652 Brassica carinata HOM05D004752 ORTHO05D005523 2.1e-30 135.6 99 72.7
TAR381G0821 Trochodendron aralioides HOM05D004752 ORTHO05D005523 2.1e-30 135.6 98 72.4
BcaC03g15326 Brassica carinata HOM05D004752 ORTHO05D005523 2.7e-30 135.2 99 71.7
A02p17630 Brassica napus HOM05D004752 ORTHO05D005523 2.7e-30 135.2 99 71.7
C02p29310 Brassica napus HOM05D004752 ORTHO05D005523 2.7e-30 135.2 99 71.7
BolC2t08982H Brassica oleracea HOM05D004752 ORTHO05D005523 2.7e-30 135.2 99 71.7
BraA02t06809Z Brassica rapa HOM05D004752 ORTHO05D005523 2.7e-30 135.2 99 71.7
Prupe.1G506700 Prunus persica HOM05D004752 ORTHO05D005523 2.7e-30 135.2 98 70.4
BcaB05g24700 Brassica carinata HOM05D004752 ORTHO05D005523 3.5e-30 134.8 99 70.7
C06p35220 Brassica napus HOM05D004752 ORTHO05D005523 3.5e-30 134.8 99 70.7
CARHR064830 Cardamine hirsuta HOM05D004752 ORTHO05D005523 3.5e-30 134.8 99 70.7
Dinv41721 Davidia involucrata HOM05D004752 ORTHO05D005523 3.5e-30 134.8 102 74.5
Thhalv10019369m.g Eutrema salsugineum HOM05D004752 ORTHO05D005523 3.5e-30 134.8 99 71.7
C06p46120 Brassica napus HOM05D004752 ORTHO05D005523 4.6e-30 134.4 99 70.7
BolC6t39665H Brassica oleracea HOM05D004752 ORTHO05D005523 4.6e-30 134.4 99 70.7
Eucgr.F02586 Eucalyptus grandis HOM05D004752 ORTHO05D005523 4.6e-30 134.4 104 73.1
Gorai.009G263400 Gossypium raimondii HOM05D004752 ORTHO05D005523 4.6e-30 134.4 100 76.0
BcaB03g14924 Brassica carinata HOM05D004752 ORTHO05D005523 6.0e-30 134.0 99 70.7
BcaC08g46649 Brassica carinata HOM05D004752 ORTHO05D005523 6.0e-30 134.0 99 70.7
BolC6t38628H Brassica oleracea HOM05D004752 ORTHO05D005523 6.0e-30 134.0 99 70.7
BraA07t31385Z Brassica rapa HOM05D004752 ORTHO05D005523 6.0e-30 134.0 99 71.7
Gohir.A05G250100 Gossypium hirsutum HOM05D004752 ORTHO05D005523 6.0e-30 134.0 100 75.0
Duzib177G0553 Durio zibethinus HOM05D004752 ORTHO05D005523 7.9e-30 133.7 102 72.5
Gohir.D05G251900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 7.9e-30 133.7 100 75.0
Gorai.009G263300 Gossypium raimondii HOM05D004752 ORTHO05D005523 7.9e-30 133.7 100 75.0
Aqoxy5G02666 Aquilegia oxysepala HOM05D004752 ORTHO05D005523 1.0e-29 133.3 102 69.6
Carub.0002s1880 Capsella rubella HOM05D004752 ORTHO05D005523 1.0e-29 133.3 99 68.7
CiPaw.05G229600 Carya illinoinensis HOM05D004752 ORTHO05D005523 1.0e-29 133.3 98 72.4
Thecc.08G186100 Theobroma cacao HOM05D004752 ORTHO05D005523 1.0e-29 133.3 102 73.5
Aa31LG4G8590 Aethionema arabicum HOM05D004752 ORTHO05D005523 1.3e-29 132.9 99 70.7
Cc00_g06570 Coffea canephora HOM05D004752 ORTHO05D005523 1.3e-29 132.9 102 70.6
PGR042G3757 Punica granatum HOM05D004752 ORTHO05D005523 1.3e-29 132.9 102 74.5
RcHm_v2.0_Chr7g0240801 Rosa chinensis HOM05D004752 ORTHO05D005523 1.3e-29 132.9 98 70.4
Actinidia29420 Actinidia chinensis HOM05D004752 ORTHO05D005523 1.8e-29 132.5 100 70.0
Gohir.D05G253600 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.8e-29 132.5 99 75.8
BcaC08g45743 Brassica carinata HOM05D004752 ORTHO05D005523 2.3e-29 132.1 99 69.7
Potri.019G081700 Populus trichocarpa HOM05D004752 ORTHO05D005523 2.3e-29 132.1 99 70.7
VMungo0720G2181 Vigna mungo HOM05D004752 ORTHO05D005523 2.3e-29 132.1 121 66.9
COL.COLO4_34528 Corchorus olitorius HOM05D004752 ORTHO05D005523 3.0e-29 131.7 102 72.5
FvH4_5g38800 Fragaria vesca HOM05D004752 ORTHO05D005523 3.0e-29 131.7 98 69.4
FAN18G0635 Fragaria x ananassa HOM05D004752 ORTHO05D005523 3.0e-29 131.7 98 69.4
BcaB03g15640 Brassica carinata HOM05D004752 ORTHO05D005523 3.9e-29 131.3 100 69.0
Gohir.A05G250200 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.9e-29 131.3 100 75.0
FAN04G0063 Fragaria x ananassa HOM05D004752 ORTHO05D005523 5.1e-29 131.0 98 69.4
Sp5g27090 Schrenkiella parvula HOM05D004752 ORTHO05D005523 5.1e-29 131.0 99 68.7
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 6.7e-29 130.6 99 66.7
A07p38200 Brassica napus HOM05D004752 ORTHO05D005523 6.7e-29 130.6 99 68.7
CSS0011118 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 6.7e-29 130.6 102 72.5
CSS0018537 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 6.7e-29 130.6 102 72.5
Duzib211G0386 Durio zibethinus HOM05D004752 ORTHO05D005523 6.7e-29 130.6 102 72.5
A07p30460 Brassica napus HOM05D004752 ORTHO05D005523 1.1e-28 129.8 100 68.0
FAN08G2110 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.1e-28 129.8 98 68.4
FAN13G0652 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.1e-28 129.8 98 68.4
QL12p035384 Quercus lobata HOM05D004752 ORTHO05D005523 1.1e-28 129.8 98 71.4
DCAR_011527 Daucus carota HOM05D004752 ORTHO05D005523 1.9e-28 129.0 98 71.4
Rhsim06G0089000 Rhododendron simsii HOM05D004752 ORTHO05D005523 2.5e-28 128.6 102 68.6
Rhsim11G0057800 Rhododendron simsii HOM05D004752 ORTHO05D005523 2.5e-28 128.6 102 68.6
Gorai.006G130300 Gossypium raimondii HOM05D004752 ORTHO05D005523 4.3e-28 127.9 101 65.3
BraA07t30682Z Brassica rapa HOM05D004752 ORTHO05D005523 5.6e-28 127.5 100 67.0
CiPaw.06G024200 Carya illinoinensis HOM05D004752 ORTHO05D005523 7.4e-28 127.1 98 68.4
vmacro00760 Vaccinium macrocarpon HOM05D004752 ORTHO05D005523 9.6e-28 126.7 102 67.6
Nn5g27610 Nelumbo nucifera HOM05D004752 ORTHO05D005523 2.1e-27 125.6 101 67.3
Gohir.D09G112900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.8e-27 125.2 102 67.6
ClCG09G009960 Citrullus lanatus HOM05D004752 ORTHO05D005523 3.7e-27 124.8 100 66.0
Migut.C01286 Erythranthe guttata HOM05D004752 ORTHO05D005523 3.7e-27 124.8 99 68.7
PGSC0003DMG400026069 Solanum tuberosum HOM05D004752 ORTHO05D005523 3.7e-27 124.8 99 69.7
Manes.02G194400 Manihot esculenta HOM05D004752 ORTHO05D005523 4.8e-27 124.4 98 68.4
THA.LOC104816385 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 4.8e-27 124.4 99 69.7
MD00G1104100 Malus domestica HOM05D004752 ORTHO05D005523 6.2e-27 124.0 95 67.4
Potri.013G110600 Populus trichocarpa HOM05D004752 ORTHO05D005523 1.1e-26 123.2 101 68.3
Sed0006132 Sechium edule HOM05D004752 ORTHO05D005523 1.4e-26 122.9 100 63.0
CsaV3_2G033590 Cucumis sativus L. HOM05D004752 ORTHO05D005523 1.8e-26 122.5 100 64.0
Gohir.D09G112701 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.8e-26 122.5 100 67.0
PSO170G1458 Papaver somniferum HOM05D004752 ORTHO05D005523 2.4e-26 122.1 100 68.0
PSO782G1292 Papaver somniferum HOM05D004752 ORTHO05D005523 3.1e-26 121.7 100 69.0
PGR102G0675 Punica granatum HOM05D004752 ORTHO05D005523 3.1e-26 121.7 103 66.0
Lj4E474T0 Lonicera japonica HOM05D004752 ORTHO05D005523 4.0e-26 121.3 101 69.3
HanXRQChr04g0109661 Helianthus annuus HOM05D004752 ORTHO05D005523 6.9e-26 120.6 100 70.0
Nitab4.5_0000365g0250 Nicotiana tabacum HOM05D004752 ORTHO05D005523 6.9e-26 120.6 95 69.5
MELO3C008132.2 Cucumis melo HOM05D004752 ORTHO05D005523 9.0e-26 120.2 100 63.0
Peaxi162Scf00268g00615 Petunia axillaris HOM05D004752 ORTHO05D005523 9.0e-26 120.2 100 68.0
SalBow6G5891 Salvia bowleyana HOM05D004752 ORTHO05D005523 9.0e-26 120.2 99 65.7
Sc23g0001310 Simmondsia chinensis HOM05D004752 ORTHO05D005523 9.0e-26 120.2 100 70.0
Actinidia03509 Actinidia chinensis HOM05D004752 ORTHO05D005523 1.2e-25 119.8 100 65.0
AUR62022705 Chenopodium quinoa HOM05D004752 ORTHO05D005523 1.2e-25 119.8 97 70.1
FAN02G3062 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.2e-25 119.8 73 79.5
AL2G31650 Arabidopsis lyrata HOM05D004752 ORTHO05D005523 1.5e-25 119.4 100 64.0
Manes.18G103200 Manihot esculenta HOM05D004752 ORTHO05D005523 1.5e-25 119.4 101 65.3
Nitab4.5_0000303g0280 Nicotiana tabacum HOM05D004752 ORTHO05D005523 1.5e-25 119.4 100 67.0
Nitab4.5_0001082g0040 Nicotiana tabacum HOM05D004752 ORTHO05D005523 1.5e-25 119.4 100 67.0
Nitab4.5_0003010g0020 Nicotiana tabacum HOM05D004752 ORTHO05D005523 1.5e-25 119.4 94 69.1
Peaxi162Scf00391g00436 Petunia axillaris HOM05D004752 ORTHO05D005523 1.5e-25 119.4 94 68.1
Hund27095 Selenicereus undatus HOM05D004752 ORTHO05D005523 1.5e-25 119.4 100 68.0
PGSC0003DMG400009277 Solanum tuberosum HOM05D004752 ORTHO05D005523 2.6e-25 118.6 94 70.2
Solyc06g065180.3 Solanum lycopersicum HOM05D004752 ORTHO05D005523 5.8e-25 117.5 98 65.3
Sopen06g023680 Solanum pennellii HOM05D004752 ORTHO05D005523 7.6e-25 117.1 98 64.3
FAN18G0607 Fragaria x ananassa HOM05D004752 ORTHO05D005523 9.9e-25 116.7 73 78.1
FAN18G1874 Fragaria x ananassa HOM05D004752 ORTHO05D005523 9.9e-25 116.7 73 78.1
FAN18G2073 Fragaria x ananassa HOM05D004752 ORTHO05D005523 9.9e-25 116.7 73 78.1
AUR62004632 Chenopodium quinoa HOM05D004752 ORTHO05D005523 1.3e-24 116.3 107 62.6
AT1G72020 Arabidopsis thaliana HOM05D004752 ORTHO05D005523 1.7e-24 115.9 100 61.0
Sc01g0001860 Simmondsia chinensis HOM05D004752 ORTHO05D005523 1.7e-24 115.9 97 67.0
MD15G1358900 Malus domestica HOM05D004752 ORTHO05D005523 2.2e-24 115.5 98 62.2
TWI59G0745 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 2.2e-24 115.5 100 63.0
MSTRG.1541 Avicennia marina HOM05D004752 ORTHO05D005523 2.9e-24 115.2 100 64.0
SalBow6G0286 Salvia bowleyana HOM05D004752 ORTHO05D005523 2.9e-24 115.2 103 60.2
Duzib177G0197 Durio zibethinus HOM05D004752 ORTHO05D005523 3.8e-24 114.8 102 64.7
EL10Ac1g00098 Beta vulgaris HOM05D004752 ORTHO05D005523 1.1e-23 113.2 99 65.7
CANSAT80G1056 Cannabis sativa HOM05D004752 ORTHO05D005523 1.1e-23 113.2 102 66.7
MBI17_g21481_MAGBIO Magnolia biondii HOM05D004752 ORTHO05D005523 1.4e-23 112.8 69 82.6
Rhsim11G0056800 Rhododendron simsii HOM05D004752 ORTHO05D005523 1.4e-23 112.8 124 55.6
TWI14G1278 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 1.4e-23 112.8 100 60.0
ECA247G0381 Erigeron canadensis HOM05D004752 ORTHO05D005523 1.9e-23 112.5 98 64.3
Zm00001eb082670 Zea mays HOM05D004752 ORTHO05D005523 3.2e-23 111.7 96 62.5
MSTRG.25459 Avicennia marina HOM05D004752 ORTHO05D005523 5.5e-23 110.9 101 62.4
SalBow6G5456 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.2e-22 109.8 99 59.6
SalBow6G7070 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.2e-22 109.8 99 59.6
Os04g0432600 Oryza sativa ssp. japonica HOM05D004752 ORTHO05D005523 1.6e-22 109.4 97 60.8
CDE07G1886 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 3.5e-22 108.2 99 60.6
Sabra19G0093300 Salix brachista HOM05D004752 ORTHO05D005523 3.5e-22 108.2 74 74.3
CDE04G0573 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 6.0e-22 107.5 99 60.6
Lsat_1_v5_gn_1_12481 Lactuca sativa HOM05D004752 ORTHO05D005523 3.0e-21 105.1 99 60.6
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 3.0e-21 105.1 72 70.8
Gohir.A09G115700 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.9e-21 104.8 68 73.5
ATR0071G025 Amborella trichopoda HOM05D004752 ORTHO05D005523 4.3e-20 101.3 73 74.0
unitig_0.g2130 Utricularia gibba HOM05D004752 ORTHO05D005523 9.6e-20 100.1 89 60.7
GSVIVG01012767001 Vitis vinifera HOM05D004752 ORTHO05D005523 1.6e-19 99.4 109 52.3
Zm00001eb243470 Zea mays HOM05D004752 ORTHO05D005523 8.2e-19 97.1 98 55.1
HPP92_000079 Vanilla planifolia HOM05D004752 ORTHO05D005523 2.4e-18 95.5 59 74.6
SEGI_26065 Sequoiadendron giganteum HOM05D004752 ORTHO05D005523 1.0e-16 90.1 72 63.9
unitig_747.g21474 Utricularia gibba HOM05D004752 ORTHO05D005523 1.9e-15 85.9 84 58.3
SHI09031 Sapria himalayana HOM05D004752 ORTHO05D005523 9.3e-15 83.6 79 53.2
Mapoly0001s0236 Marchantia polymorpha HOM05D004752 ORTHO05D005523 1.6e-11 72.8 103 43.7
CBR_g3658 Chara braunii HOM05D004752 ORTHO05D005523 3.4e-09 65.1 54 57.4
Pp3c19_1780 Physcomitrium patens HOM05D004752 ORTHO05D005523 5.9e-09 64.3 98 38.8
AagrBONN_evm.TU.Sc2ySwM_117.1418 Anthoceros agrestis HOM05D004752 ORTHO05D005523 6.5e-08 60.8 94 41.5


User provided reference genes

Program Settings