Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 1.2e-70 270.4 223 100.0
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 2.2e-67 259.6 223 95.1
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 7.8e-49 198.0 226 81.9
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 7.3e-47 191.4 229 71.2
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 4.0e-45 185.7 225 67.6
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 2.6e-44 183.0 224 62.1
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 1.7e-43 180.3 226 65.9
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 7.1e-42 174.9 225 58.7
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 7.8e-41 171.4 99 89.9
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 1.7e-40 170.2 88 98.9
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 1.7e-40 170.2 101 87.1
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 1.6e-38 163.7 87 98.9
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 8.9e-37 157.9 99 82.8
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 1.2e-36 157.5 99 79.8
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 1.2e-36 157.5 98 81.6
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 7.6e-36 154.8 97 79.4
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 9.9e-36 154.5 98 80.6
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 9.9e-36 154.5 98 80.6
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 2.2e-35 153.3 98 79.6
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 4.9e-35 152.1 99 75.8
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 4.9e-35 152.1 97 78.4
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 1.1e-34 151.0 98 79.6
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 1.1e-34 151.0 95 80.0
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 1.4e-34 150.6 96 79.2
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 3.2e-34 149.4 101 77.2
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 3.2e-34 149.4 96 78.1
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 4.2e-34 149.1 97 76.3
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 4.2e-34 149.1 99 75.8
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 4.2e-34 149.1 224 64.7
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 7.1e-34 148.3 96 78.1
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 9.3e-34 147.9 97 76.3
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 9.3e-34 147.9 97 76.3
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 1.2e-33 147.5 97 77.3
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.2e-33 147.5 99 76.8
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 1.2e-33 147.5 99 75.8
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 1.6e-33 147.1 99 76.8
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 2.1e-33 146.7 97 75.3
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 3.5e-33 146.0 98 77.6
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 4.6e-33 145.6 98 74.5
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 1.7e-32 143.7 98 75.5
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.7e-32 143.7 99 75.8
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.7e-32 143.7 99 74.7
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.7e-32 143.7 98 75.5
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 2.3e-32 143.3 96 76.0
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 3.0e-32 142.9 97 74.2
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 4.3e-31 139.0 96 71.9
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 5.6e-31 138.7 99 68.7
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 1.3e-30 137.5 99 69.7
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 2.1e-30 136.7 97 73.2
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 2.1e-30 136.7 99 68.7
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 2.8e-30 136.3 99 67.7
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 3.6e-30 136.0 88 79.5
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 4.8e-30 135.6 96 70.8
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 1.1e-29 134.4 97 70.1
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 1.1e-29 134.4 96 68.8
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 1.4e-29 134.0 97 69.1
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 1.4e-29 134.0 97 69.1
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 2.4e-29 133.3 99 66.7
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 4.0e-29 132.5 97 67.0
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 4.0e-29 132.5 96 67.7
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 5.3e-29 132.1 87 77.0
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 5.3e-29 132.1 93 69.9
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 2.0e-28 130.2 93 68.8
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 2.2e-27 126.7 95 68.4
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 2.9e-27 126.3 79 81.0
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 3.8e-27 125.9 219 44.7
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 3.8e-27 125.9 79 79.7
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 3.8e-27 125.9 94 68.1
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 4.9e-27 125.6 98 67.3
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 8.4e-27 124.8 98 66.3
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 8.4e-27 124.8 86 75.6
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 1.1e-26 124.4 98 66.3
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 1.1e-26 124.4 98 66.3
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 4.2e-26 122.5 99 62.6
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 4.2e-26 122.5 85 74.1
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 5.4e-26 122.1 95 67.4
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 1.6e-25 120.6 79 77.2
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 2.1e-25 120.2 90 65.6
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 3.5e-25 119.4 99 68.7
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 6.0e-25 118.6 95 61.1
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 6.0e-25 118.6 91 64.8
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 3.9e-24 115.9 87 67.8
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 6.7e-24 115.2 224 56.7
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 8.7e-24 114.8 126 52.4
BolC6t36770H Brassica oleracea HOM05D006504 ORTHO05D007867 1.6e-22 110.5 99 63.6
QL05p000679 Quercus lobata HOM05D006504 ORTHO05D007867 2.1e-22 110.2 86 72.1
QL05p000687 Quercus lobata HOM05D006504 ORTHO05D007867 2.1e-22 110.2 86 72.1
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 2.8e-22 109.8 96 60.4
BcaC06g35444 Brassica carinata HOM05D006504 ORTHO05D007867 1.8e-21 107.1 96 55.2
C07p16100 Brassica napus HOM05D006504 ORTHO05D007867 1.8e-21 107.1 96 55.2
BolC7t42095H Brassica oleracea HOM05D006504 ORTHO05D007867 1.8e-21 107.1 96 55.2
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 2.4e-21 106.7 90 62.2
BraA05t20659Z Brassica rapa HOM05D006504 ORTHO05D007867 6.9e-21 105.1 97 61.9
Carub.0001s2784 Capsella rubella HOM05D006504 ORTHO05D007867 9.0e-21 104.8 99 57.6
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 1.2e-20 104.4 92 54.3
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 1.2e-20 104.4 92 54.3
ATR0800G060 Amborella trichopoda HOM05D006504 ORTHO05D007867 3.4e-20 102.8 83 63.9
A08p01030 Brassica napus HOM05D001264 ORTHO05D007867 3.8e-19 99.4 79 65.8
C03p92210 Brassica napus HOM05D001264 ORTHO05D007867 3.8e-19 99.4 79 65.8
Rhsim12G0206400 Rhododendron simsii HOM05D006504 ORTHO05D007867 4.6e-17 92.4 104 52.9
Mapoly0004s0244 Marchantia polymorpha HOM05D006504 ORTHO05D007867 6.0e-17 92.0 96 47.9
ClCG07G013760 Citrullus lanatus HOM05D006504 ORTHO05D007867 1.8e-16 90.5 81 63.0
C06p15780 Brassica napus HOM05D001264 ORTHO05D001167 1.1e-15 87.8 80 65.0
A05p17670 Brassica napus HOM05D006504 ORTHO05D007867 1.9e-15 87.0 79 62.0
Gohir.A10G058600 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.3e-14 84.3 66 65.2
SEGI_28258 Sequoiadendron giganteum HOM05D006504 ORTHO05D007867 2.1e-14 83.6 95 47.4
BcaC08g44177 Brassica carinata HOM05D001264 ORTHO05D001167 6.2e-14 82.0 80 62.5
Zm00001eb066180 Zea mays HOM05D006504 ORTHO05D007867 8.1e-14 81.6 97 47.4
Haze_15959 Corylus avellana HOM05D006504 ORTHO05D007867 3.1e-13 79.7 48 79.2
AL1G43430 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 5.3e-13 79.0 100 46.0
Sp3g12060 Schrenkiella parvula HOM05D006504 ORTHO05D007867 9.0e-13 78.2 80 53.8
SGA_v2.0_scaffold127G34055 Striga asiatica HOM05D006504 ORTHO05D007867 1.2e-12 77.8 66 62.1
Phvul.010G138400 Phaseolus vulgaris HOM05D006504 ORTHO05D007867 2.2e-11 73.6 225 44.0
SMO358G0601 Selaginella moellendorffii HOM05D006504 ORTHO05D007867 1.4e-10 70.9 89 42.7
Thhalv10022201m.g Eutrema salsugineum HOM05D006504 ORTHO05D007867 2.5e-10 70.1 68 55.9
vmacro17023 Vaccinium macrocarpon HOM05D006504 ORTHO05D007867 5.5e-10 68.9 50 64.0
DCAR_007625 Daucus carota HOM05D006504 ORTHO05D007867 1.2e-09 67.8 85 44.7
Nitab4.5_0001219g0120 Nicotiana tabacum HOM05D006504 ORTHO05D007867 1.2e-09 67.8 88 47.7
AT1G29580 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 8.7e-08 61.6 99 44.4
SGA_v2.0_scaffold464G52010 Striga asiatica HOM05D006504 ORTHO05D007867 3.3e-07 59.7 45 64.4
AagrBONN_evm.TU.Sc2ySwM_344.1668 Anthoceros agrestis HOM05D006504 ORTHO05D007867 7.4e-07 58.5 60 45.0
Aa31LG8G1010 Aethionema arabicum HOM05D006504 ORTHO05D007867 2.1e-06 57.0 79 40.5


User provided reference genes

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