Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.S0U20I Arachis hypogaea HOM05D006863 ORTHO05D009101 3.1e-198 694.9 345 100.0
arahy.Tifrunner.gnm1.ann1.2EV214 Arachis hypogaea HOM05D006863 ORTHO05D009101 5.7e-192 674.1 348 97.1
arahy.Tifrunner.gnm1.ann1.PE9U7E Arachis hypogaea HOM05D006863 ORTHO05D009101 1.5e-187 659.4 382 88.7
Lalb_Chr17g0342021 Lupinus albus HOM05D006863 ORTHO05D009101 1.1e-134 483.8 343 70.8
Glyma.08G260300 Glycine max HOM05D006863 ORTHO05D009101 1.9e-134 483.0 336 72.3
Phvul.002G082500 Phaseolus vulgaris HOM05D006863 ORTHO05D009101 3.5e-133 478.8 339 70.5
Medtr5g054910 Medicago truncatula HOM05D006863 ORTHO05D009101 1.3e-132 476.9 338 70.4
TPR.G38252 Trifolium pratense HOM05D006863 ORTHO05D009101 8.2e-130 467.6 348 69.5
Lj2g0005111 Lotus japonicus HOM05D006863 ORTHO05D009101 1.2e-128 463.8 345 70.7
VMungo1215G1485 Vigna mungo HOM05D006863 ORTHO05D009101 3.4e-128 462.2 340 68.5
Manes.14G100000 Manihot esculenta HOM05D006863 ORTHO05D009101 2.2e-119 433.0 299 69.6
CSS0023691 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 2.5e-118 429.5 275 72.4
Ciclev10031676m.g Citrus clementina HOM05D006863 ORTHO05D009101 7.2e-118 427.9 334 66.8
Dinv04484 Davidia involucrata HOM05D006863 ORTHO05D009101 2.7e-117 426.0 349 63.0
Thecc.02G357800 Theobroma cacao HOM05D006863 ORTHO05D009101 4.6e-117 425.2 280 71.8
HanXRQChr17g0552211 Helianthus annuus HOM05D006863 ORTHO05D009101 1.4e-116 423.7 305 65.9
Sabra10G0096600 Salix brachista HOM05D006863 ORTHO05D009101 5.1e-116 421.8 312 67.0
Potri.010G127200 Populus trichocarpa HOM05D006863 ORTHO05D009101 1.1e-115 420.6 312 67.9
Prupe.1G308400 Prunus persica HOM05D006863 ORTHO05D009101 1.5e-115 420.2 349 60.5
Gohir.1Z049378 Gossypium hirsutum HOM05D006863 ORTHO05D009101 2.0e-115 419.9 285 69.8
Gohir.A13G053600 Gossypium hirsutum HOM05D006863 ORTHO05D009101 2.0e-115 419.9 285 69.8
RcHm_v2.0_Chr4g0435511 Rosa chinensis HOM05D006863 ORTHO05D009101 2.6e-115 419.5 333 63.1
MD13G1044100 Malus domestica HOM05D006863 ORTHO05D009101 5.7e-115 418.3 336 62.8
Gorai.013G081400 Gossypium raimondii HOM05D006863 ORTHO05D009101 7.4e-115 417.9 277 70.8
CANSAT56G0117 Cannabis sativa HOM05D006863 ORTHO05D009101 1.7e-114 416.8 284 70.1
Atru.chr11.1297 Acer truncatum HOM05D006863 ORTHO05D009101 2.2e-114 416.4 331 64.4
Gohir.D13G071100 Gossypium hirsutum HOM05D006863 ORTHO05D009101 3.7e-114 415.6 277 70.4
Eucgr.G02336 Eucalyptus grandis HOM05D006863 ORTHO05D009101 4.8e-114 415.2 313 67.1
Duzib251G0889 Durio zibethinus HOM05D006863 ORTHO05D009101 5.3e-113 411.8 305 66.9
SalBow8G2780 Salvia bowleyana HOM05D006863 ORTHO05D009101 9.1e-113 411.0 255 71.8
BcaC04g21415 Brassica carinata HOM05D006863 ORTHO05D005487 2.0e-112 409.8 278 70.5
C09p32050 Brassica napus HOM05D006863 ORTHO05D009101 2.0e-112 409.8 278 70.5
BolC9t56057H Brassica oleracea HOM05D006863 ORTHO05D005487 2.0e-112 409.8 278 70.5
QL01p043996 Quercus lobata HOM05D006863 ORTHO05D009101 2.6e-112 409.5 331 63.7
Thhalv10004539m.g Eutrema salsugineum HOM05D006863 ORTHO05D009101 1.0e-111 407.5 280 69.3
ClCG08G005160 Citrullus lanatus HOM05D006863 ORTHO05D009101 2.9e-111 406.0 337 62.6
PGSC0003DMG401015876 Solanum tuberosum HOM05D006863 ORTHO05D009101 3.8e-111 405.6 279 67.7
Sp2g15050 Schrenkiella parvula HOM05D006863 ORTHO05D009101 5.0e-111 405.2 278 70.1
ECA246G5009 Erigeron canadensis HOM05D006863 ORTHO05D009101 6.5e-111 404.8 252 72.2
BraA09t38093Z Brassica rapa HOM05D006863 ORTHO05D005487 8.5e-111 404.4 278 69.1
CsaV3_6G003370 Cucumis sativus L. HOM05D006863 ORTHO05D009101 8.5e-111 404.4 333 61.9
Rhsim09G0110000 Rhododendron simsii HOM05D006863 ORTHO05D009101 1.1e-110 404.1 340 62.6
FAN12G1275 Fragaria x ananassa HOM05D006863 ORTHO05D009101 1.9e-110 403.3 332 62.0
A09p25060 Brassica napus HOM05D006863 ORTHO05D005487 3.2e-110 402.5 278 69.1
Sopen04g002190 Solanum pennellii HOM05D006863 ORTHO05D009101 3.2e-110 402.5 254 72.0
EL10Ac6g14444 Beta vulgaris HOM05D006863 ORTHO05D009101 7.2e-110 401.4 337 61.1
Nitab4.5_0000280g0240 Nicotiana tabacum HOM05D006863 ORTHO05D009101 7.2e-110 401.4 255 71.8
TAR371G0467 Trochodendron aralioides HOM05D006863 ORTHO05D009101 7.2e-110 401.4 287 68.6
Cc11_g10350 Coffea canephora HOM05D006863 ORTHO05D009101 9.4e-110 401.0 253 73.5
Lj3C1017T9 Lonicera japonica HOM05D006863 ORTHO05D009101 2.1e-109 399.8 259 74.1
Aa31LG2G6540 Aethionema arabicum HOM05D006863 ORTHO05D009101 3.6e-109 399.1 272 69.5
Migut.L01080 Erythranthe guttata HOM05D006863 ORTHO05D009101 3.6e-109 399.1 345 60.0
AL5G14420 Arabidopsis lyrata HOM05D006863 ORTHO05D009101 7.9e-109 397.9 276 68.5
AT3G25805 Arabidopsis thaliana HOM05D006863 ORTHO05D009101 1.4e-108 397.1 282 67.0
Sed0022103 Sechium edule HOM05D006863 ORTHO05D009101 3.0e-108 396.0 332 61.4
GSVIVG01011920001 Vitis vinifera HOM05D006863 ORTHO05D009101 3.0e-108 396.0 328 62.2
Carub.0005s0363 Capsella rubella HOM05D006863 ORTHO05D009101 3.9e-108 395.6 282 68.1
Solyc04g007110.4 Solanum lycopersicum HOM05D006863 ORTHO05D009101 8.8e-108 394.4 253 71.9
Nitab4.5_0009260g0040 Nicotiana tabacum HOM05D006863 ORTHO05D009101 7.4e-107 391.3 320 60.0
PGR119G0754 Punica granatum HOM05D006863 ORTHO05D009101 1.7e-106 390.2 337 60.5
THA.LOC104825705 Tarenaya hassleriana HOM05D006863 ORTHO05D009101 2.2e-106 389.8 268 68.3
Actinidia14870 Actinidia chinensis HOM05D006863 ORTHO05D009101 2.8e-106 389.4 293 68.3
vmacro10546 Vaccinium macrocarpon HOM05D006863 ORTHO05D009101 8.2e-106 387.9 393 53.7
Lsat_1_v5_gn_3_59660 Lactuca sativa HOM05D006863 ORTHO05D009101 1.8e-105 386.7 339 58.1
Aqoxy3G00331 Aquilegia oxysepala HOM05D006863 ORTHO05D009101 2.4e-105 386.3 280 65.0
MSTRG.824 Avicennia marina HOM05D006863 ORTHO05D009101 4.1e-105 385.6 312 61.5
BcaB07g30631 Brassica carinata HOM05D001825 ORTHO05D009101 7.0e-105 384.8 260 71.9
Cpa.g.sc1.191 Carica papaya HOM05D006863 ORTHO05D009101 7.0e-105 384.8 280 66.4
Peaxi162Scf00086g00919 Petunia axillaris HOM05D006863 ORTHO05D009101 1.2e-104 384.0 281 64.1
AUR62035252 Chenopodium quinoa HOM05D006863 ORTHO05D009101 3.5e-104 382.5 353 57.5
CiPaw.15G005400 Carya illinoinensis HOM05D006863 ORTHO05D009101 5.0e-103 378.6 225 77.8
MBI12_g32420_MAGBIO Magnolia biondii HOM05D006863 ORTHO05D009101 3.2e-102 375.9 247 70.9
Ah.03g137770 Amaranthus hybridus HOM05D006863 ORTHO05D005487 1.8e-100 370.2 382 52.4
Nn4g23802 Nelumbo nucifera HOM05D006863 ORTHO05D009101 8.8e-100 367.9 253 69.2
Os04g0462300 Oryza sativa ssp. japonica HOM05D006863 ORTHO05D009101 2.8e-98 362.8 311 56.3
FvH4_4g27661 Fragaria vesca HOM05D006863 ORTHO05D009101 4.8e-98 362.1 221 74.7
PSO210G1549 Papaver somniferum HOM05D006863 ORTHO05D009101 4.8e-98 362.1 245 65.7
PSO447G0382 Papaver somniferum HOM05D006863 ORTHO05D009101 1.2e-96 357.5 247 64.0
HPP92_023480 Vanilla planifolia HOM05D006863 ORTHO05D009101 4.2e-94 349.0 264 64.0
SGA_v2.0_scaffold32G13125 Striga asiatica HOM05D006863 ORTHO05D009101 2.7e-93 346.3 312 56.1
Psat4g144720 Pisum sativum HOM05D006863 ORTHO05D009101 8.3e-90 334.7 212 74.1
Peaxi162Scf00086g00918 Petunia axillaris HOM05D006863 ORTHO05D009101 1.6e-85 320.5 308 54.2
ATR0141G001 Amborella trichopoda HOM05D006863 ORTHO05D009101 1.0e-84 317.8 285 54.0
unitig_22.g6873 Utricularia gibba HOM05D001580 ORTHO05D009101 6.8e-84 315.1 307 53.7
Zm00001eb080610 Zea mays HOM05D006863 ORTHO05D009101 9.2e-81 304.7 272 54.0
DCAR_026725 Daucus carota HOM05D006863 ORTHO05D009101 1.6e-80 303.9 271 53.5
Mapoly0073s0050 Marchantia polymorpha HOM05D006863 ORTHO05D009101 1.0e-79 301.2 276 53.3
CARHR146720 Cardamine hirsuta HOM05D006863 ORTHO05D009101 2.3e-79 300.1 190 70.5
AUR62002895 Chenopodium quinoa HOM05D006863 ORTHO05D009101 2.1e-77 293.5 195 69.2
TWI75G0199 Tripterygium wilfordii HOM05D006863 ORTHO05D009101 3.0e-76 289.7 179 73.2
SEGI_08911 Sequoiadendron giganteum HOM05D006863 ORTHO05D009101 1.7e-74 283.9 226 58.0
SEGI_20209 Sequoiadendron giganteum HOM05D006863 ORTHO05D009101 1.7e-74 283.9 226 58.0
FAN22G1855 Fragaria x ananassa HOM05D006863 ORTHO05D009101 2.2e-74 283.5 177 71.2
Glyma.20G042600 Glycine max HOM05D006863 ORTHO05D009101 6.4e-74 282.0 164 78.7
Pp3c1_42010 Physcomitrium patens HOM05D006863 ORTHO05D009101 7.0e-73 278.5 258 49.6
Sc04g0006570 Simmondsia chinensis HOM05D006863 ORTHO05D009101 3.9e-71 272.7 178 71.3
Haze_17458 Corylus avellana HOM05D006863 ORTHO05D009101 2.5e-70 270.0 248 56.9
AUR62002896 Chenopodium quinoa HOM05D006863 ORTHO05D009101 1.2e-67 261.2 194 63.4
SMO111G0216 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 1.5e-67 260.8 264 47.7
MELO3C011551.2 Cucumis melo HOM05D006863 ORTHO05D009101 2.7e-64 250.0 164 68.9
Ca_27358_v3 Cicer arietinum L. HOM05D006863 ORTHO05D009101 1.1e-62 244.6 194 62.9
AagrBONN_evm.TU.Sc2ySwM_117.2959 Anthoceros agrestis HOM05D006863 ORTHO05D009101 3.6e-61 239.6 257 45.5
CSS0005134 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 3.4e-59 233.0 275 46.2
CSS0013896 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 3.4e-59 233.0 275 46.2
COL.COLO4_07899 Corchorus olitorius HOM05D006863 ORTHO05D009101 5.6e-54 215.7 288 43.8
Hund25085 Selenicereus undatus HOM05D006863 ORTHO05D009101 1.4e-52 211.1 192 59.9
Gorai.012G052200 Gossypium raimondii HOM05D006863 ORTHO05D009101 2.6e-43 180.3 126 66.7
Gohir.D04G047100 Gossypium hirsutum HOM05D006863 ORTHO05D009101 9.9e-43 178.3 126 65.9
Gohir.D11G195601 Gossypium hirsutum HOM05D006863 ORTHO05D009101 1.8e-36 157.5 126 61.9
SMO358G0636 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 5.3e-36 156.0 255 35.7
CDE11G0826 Ceratophyllum demersum HOM05D006863 ORTHO05D009101 8.1e-29 132.1 99 60.6
PRCOL_00006784 Prasinoderma coloniale HOM05D006863 ORTHO05D002945 5.3e-28 129.4 249 36.1
MD16G1044900 Malus domestica HOM05D006863 ORTHO05D009101 7.6e-27 125.6 92 63.0
MCO04G047 Micromonas commoda HOM05D006863 ORTHO05D002945 5.1e-23 112.8 256 32.4
Oeu042053.1 Olea europaea HOM05D006863 ORTHO05D009101 2.8e-21 107.1 68 70.6
Sc04g0006560 Simmondsia chinensis HOM05D006863 ORTHO05D009101 3.8e-18 96.7 56 78.6
Cre02.g088500 Chlamydomonas reinhardtii HOM05D002745 ORTHO05D002945 3.2e-17 93.6 256 28.5
Psat2g101840 Pisum sativum HOM05D006863 ORTHO05D044797 1.8e-12 77.8 68 60.3
Haze_17459 Corylus avellana HOM05D006863 ORTHO05D044797 9.0e-12 75.5 115 47.8
AUR62040742 Chenopodium quinoa HOM05D006863 ORTHO05D137998 9.7e-06 55.5 31 77.4


User provided reference genes

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