Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.S0MYI4 Arachis hypogaea HOM05D007550 ORTHO05D009474 2.0e-68 262.3 131 100.0
arahy.Tifrunner.gnm1.ann1.R7ZLS4 Arachis hypogaea HOM05D007550 ORTHO05D009474 2.3e-64 248.8 132 95.5
Psat2g008720 Pisum sativum HOM05D007550 ORTHO05D009474 2.4e-34 149.1 144 57.6
Medtr5g094600 Medicago truncatula HOM05D007550 ORTHO05D009474 2.1e-33 146.0 147 59.2
LjContig00272g0022958 Lotus japonicus HOM05D007550 ORTHO05D009474 5.6e-31 137.9 150 57.3
QL08p005510 Quercus lobata HOM05D007550 ORTHO05D009474 4.8e-30 134.8 140 52.9
Thecc.07G022400 Theobroma cacao HOM05D007550 ORTHO05D009474 8.1e-30 134.0 141 51.1
GSVIVG01037778001 Vitis vinifera HOM05D007550 ORTHO05D009474 2.4e-29 132.5 97 60.8
Phvul.008G275600 Phaseolus vulgaris HOM05D007550 ORTHO05D009474 6.9e-29 131.0 155 51.0
Atru.chr2.3607 Acer truncatum HOM05D007550 ORTHO05D009474 2.6e-28 129.0 93 62.4
Nn1g07439 Nelumbo nucifera HOM05D007550 ORTHO05D009474 9.9e-28 127.1 106 58.5
Duzib213G0332 Durio zibethinus HOM05D007550 ORTHO05D009474 2.2e-27 125.9 144 45.8
Manes.15G063300 Manihot esculenta HOM05D007550 ORTHO05D009474 4.9e-27 124.8 104 57.7
AL8G31140 Arabidopsis lyrata HOM05D007550 ORTHO05D009474 8.4e-27 124.0 107 57.9
TWI38G1227 Tripterygium wilfordii HOM05D007550 ORTHO05D009474 1.1e-26 123.6 89 66.3
CiPaw.12G135900 Carya illinoinensis HOM05D007550 ORTHO05D009474 1.4e-26 123.2 95 64.2
Gorai.002G096500 Gossypium raimondii HOM05D007550 ORTHO05D009474 1.9e-26 122.9 132 49.2
MD11G1204800 Malus domestica HOM05D007550 ORTHO05D009474 1.9e-26 122.9 88 63.6
Lalb_Chr17g0348791 Lupinus albus HOM05D007550 ORTHO05D009474 3.2e-26 122.1 143 53.8
Thhalv10014968m.g Eutrema salsugineum HOM05D007550 ORTHO05D009474 4.2e-26 121.7 105 57.1
Gohir.A01G087300 Gossypium hirsutum HOM05D007550 ORTHO05D009474 9.3e-26 120.6 98 59.2
AT5G55570 Arabidopsis thaliana HOM05D007550 ORTHO05D009474 1.2e-25 120.2 92 63.0
CARHR268880 Cardamine hirsuta HOM05D007550 ORTHO05D009474 2.1e-25 119.4 93 62.4
Sed0001315 Sechium edule HOM05D007550 ORTHO05D009474 3.5e-25 118.6 93 60.2
Dinv10312 Davidia involucrata HOM05D007550 ORTHO05D009474 4.6e-25 118.2 109 54.1
TAR626G1551 Trochodendron aralioides HOM05D007550 ORTHO05D009474 4.6e-25 118.2 141 45.4
Actinidia39070 Actinidia chinensis HOM05D007550 ORTHO05D009474 3.9e-24 115.2 98 58.2
A10p12800 Brassica napus HOM05D007550 ORTHO05D009474 3.9e-24 115.2 138 46.4
BraA10t43373Z Brassica rapa HOM05D007550 ORTHO05D009474 3.9e-24 115.2 138 46.4
Peaxi162Scf00955g00219 Petunia axillaris HOM05D007550 ORTHO05D009474 5.1e-24 114.8 95 54.7
Aa31LG3G11520 Aethionema arabicum HOM05D007550 ORTHO05D009474 8.7e-24 114.0 92 59.8
C09p46340 Brassica napus HOM05D007550 ORTHO05D009474 1.1e-23 113.6 138 46.4
BolC9t57498H Brassica oleracea HOM05D007550 ORTHO05D009474 1.1e-23 113.6 138 46.4
COL.COLO4_09786 Corchorus olitorius HOM05D007550 ORTHO05D009474 1.1e-23 113.6 152 44.1
MELO3C014132.2 Cucumis melo HOM05D007550 ORTHO05D009474 1.1e-23 113.6 107 52.3
CDE06G2160 Ceratophyllum demersum HOM05D007550 ORTHO05D009474 1.5e-23 113.2 141 44.7
Sabra02G0058600 Salix brachista HOM05D007550 ORTHO05D009474 1.5e-23 113.2 94 58.5
ECA240G1453 Erigeron canadensis HOM05D007550 ORTHO05D009474 4.3e-23 111.7 98 52.0
RcHm_v2.0_Chr5g0042631 Rosa chinensis HOM05D007550 ORTHO05D009474 4.3e-23 111.7 93 55.9
CsaV3_3G004390 Cucumis sativus L. HOM05D007550 ORTHO05D009474 5.6e-23 111.3 117 50.4
FvH4_3g24050 Fragaria vesca HOM05D007550 ORTHO05D009474 5.6e-23 111.3 93 54.8
FAN11G2859 Fragaria x ananassa HOM05D007550 ORTHO05D009474 5.6e-23 111.3 93 54.8
Sc18g0004240 Simmondsia chinensis HOM05D007550 ORTHO05D009474 7.4e-23 110.9 102 53.9
Solyc12g015630.2 Solanum lycopersicum HOM05D007550 ORTHO05D009474 7.4e-23 110.9 115 47.8
Nitab4.5_0001750g0040 Nicotiana tabacum HOM05D007550 ORTHO05D009474 9.6e-23 110.5 96 51.0
THA.LOC104817699 Tarenaya hassleriana HOM05D007550 ORTHO05D009474 9.6e-23 110.5 94 55.3
VMungo0647G1572 Vigna mungo HOM05D007550 ORTHO05D009474 9.6e-23 110.5 81 65.4
ATR1149G080 Amborella trichopoda HOM05D007550 ORTHO05D009474 1.3e-22 110.2 109 53.2
Lj1A885G31 Lonicera japonica HOM05D007550 ORTHO05D009474 1.3e-22 110.2 88 56.8
Migut.M01677 Erythranthe guttata HOM05D007550 ORTHO05D009474 1.6e-22 109.8 94 55.3
Hma1.2p1_0036F.1_g022730 Hydrangea macrophylla HOM05D007550 ORTHO05D009474 2.8e-22 109.0 83 61.4
PGSC0003DMG400029800 Solanum tuberosum HOM05D007550 ORTHO05D009474 3.7e-22 108.6 107 47.7
CAN.G410.43 Capsicum annuum HOM05D007550 ORTHO05D009474 4.8e-22 108.2 97 55.7
HanXRQChr13g0408011 Helianthus annuus HOM05D007550 ORTHO05D009474 1.1e-21 107.1 76 60.5
Cc05_g14670 Coffea canephora HOM05D007550 ORTHO05D009474 1.4e-21 106.7 130 45.4
Nitab4.5_0000163g0330 Nicotiana tabacum HOM05D007550 ORTHO05D009474 2.4e-21 105.9 96 52.1
EL10Ac4g07615 Beta vulgaris HOM05D007550 ORTHO05D009474 3.1e-21 105.5 86 58.1
Sopen12g007530 Solanum pennellii HOM05D007550 ORTHO05D009474 5.3e-21 104.8 115 47.0
FAN16G0277 Fragaria x ananassa HOM05D007550 ORTHO05D009474 6.9e-21 104.4 93 51.6
HPP92_028367 Vanilla planifolia HOM05D007550 ORTHO05D009474 2.0e-20 102.8 91 57.1
MSTRG.6984 Avicennia marina HOM05D007550 ORTHO05D009474 7.6e-20 100.9 99 51.5
Os01g0762300 Oryza sativa ssp. japonica HOM05D007550 ORTHO05D009474 7.6e-20 100.9 76 59.2
Zm00001eb370450 Zea mays HOM05D007550 ORTHO05D009474 2.9e-19 99.0 101 47.5
DCAR_022604 Daucus carota HOM05D007550 ORTHO05D009474 8.4e-19 97.4 118 44.9
Ciclev10009869m.g Citrus clementina HOM05D007550 ORTHO05D009474 3.2e-18 95.5 125 44.0
Glyma.14G015900 Glycine max HOM05D007550 ORTHO05D009474 5.5e-18 94.7 131 45.8
BcaB08g35917 Brassica carinata HOM05D007550 ORTHO05D009474 1.6e-17 93.2 110 46.4
Carub.0008s1594 Capsella rubella HOM05D007550 ORTHO05D009474 1.6e-17 93.2 81 58.0
Cfa020230 Carpinus fangiana HOM05D007550 ORTHO05D009474 7.9e-17 90.9 126 44.4
ClCG10G004590 Citrullus lanatus HOM05D007550 ORTHO05D009474 1.0e-16 90.5 96 49.0
Gohir.D01G073600 Gossypium hirsutum HOM05D007550 ORTHO05D009474 1.3e-16 90.1 117 43.6
Potri.011G085501 Populus trichocarpa HOM05D007550 ORTHO05D009474 1.3e-16 90.1 79 57.0
Oeu005969.1 Olea europaea HOM05D007550 ORTHO05D009474 1.8e-16 89.7 97 51.5
AagrBONN_evm.TU.Sc2ySwM_344.2781 Anthoceros agrestis HOM05D007550 ORTHO05D009474 3.0e-16 89.0 92 46.7
Mapoly0128s0022 Marchantia polymorpha HOM05D007550 ORTHO05D009474 3.0e-16 89.0 94 47.9
CBR_g30607 Chara braunii HOM05D007550 ORTHO05D009474 1.9e-15 86.3 93 48.4
PGR031G0516 Punica granatum HOM05D007550 ORTHO05D009474 3.3e-15 85.5 73 53.4
FAN25G3253 Fragaria x ananassa HOM05D007550 ORTHO05D009474 4.1e-13 78.6 81 46.9
FAN21G0016 Fragaria x ananassa HOM05D007550 ORTHO05D009474 9.0e-13 77.4 81 46.9
FAN25G1734 Fragaria x ananassa HOM05D007550 ORTHO05D009474 1.2e-12 77.0 81 45.7
PSO541G5298 Papaver somniferum HOM05D007550 ORTHO05D009474 2.6e-12 75.9 84 47.6
PSO675G9283 Papaver somniferum HOM05D007550 ORTHO05D009474 2.6e-12 75.9 84 47.6
Aqoxy4G02213 Aquilegia oxysepala HOM05D007550 ORTHO05D009474 4.5e-12 75.1 147 36.7
Cre03.g145567 Chlamydomonas reinhardtii HOM05D007550 ORTHO05D009474 2.9e-11 72.4 78 43.6
Hma1.2p1_0036F.1_g022720 Hydrangea macrophylla HOM05D007550 ORTHO05D009474 4.2e-10 68.6 95 43.2
unitig_899.g15275 Utricularia gibba HOM05D007550 ORTHO05D009474 9.3e-10 67.4 124 37.9
PRCOL_00004706 Prasinoderma coloniale HOM05D007550 ORTHO05D009474 2.7e-09 65.9 103 37.9
CANSAT56G0742 Cannabis sativa HOM05D007550 ORTHO05D009474 3.5e-09 65.5 124 37.1
Pp3c18_5680 Physcomitrium patens HOM05D007550 ORTHO05D009474 6.7e-08 61.2 103 35.0
SGA_v2.0_scaffold168G38530 Striga asiatica HOM05D007550 ORTHO05D009474 9.7e-07 57.4 122 37.7


User provided reference genes

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