Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.S0FJR3 Arachis hypogaea HOM05D006222 ORTHO05D007677 2.4e-126 455.7 263 100.0
arahy.Tifrunner.gnm1.ann1.VRQF1E Arachis hypogaea HOM05D006222 ORTHO05D007677 8.1e-122 440.7 263 98.1
Ca_11418_v3 Cicer arietinum L. HOM05D006222 ORTHO05D007677 2.6e-88 329.3 224 73.7
Lalb_Chr06g0164621 Lupinus albus HOM05D006222 ORTHO05D007677 1.8e-84 316.6 223 73.1
TPR.G8895 Trifolium pratense HOM05D006222 ORTHO05D007677 2.0e-83 313.2 232 70.3
Psat0s4086g0080 Pisum sativum HOM05D006222 ORTHO05D007677 1.1e-81 307.4 224 67.4
Medtr1g116820 Medicago truncatula HOM05D006222 ORTHO05D007677 9.1e-81 304.3 217 71.9
Glyma.20G248400 Glycine max HOM05D006222 ORTHO05D007677 1.2e-77 293.9 216 71.3
Lj5g0022978 Lotus japonicus HOM05D006222 ORTHO05D007677 1.2e-77 293.9 225 68.4
Cfa008558 Carpinus fangiana HOM05D006222 ORTHO05D007677 8.0e-77 291.2 215 67.4
CiPaw.02G058300 Carya illinoinensis HOM05D006222 ORTHO05D007677 3.0e-76 289.3 213 69.5
Prupe.1G180600 Prunus persica HOM05D006222 ORTHO05D007677 5.7e-75 285.0 216 66.7
PGR083G0744 Punica granatum HOM05D006222 ORTHO05D007677 5.7e-75 285.0 220 64.5
RcHm_v2.0_Chr4g0409281 Rosa chinensis HOM05D006222 ORTHO05D007677 8.3e-74 281.2 220 65.5
MD04G1034000 Malus domestica HOM05D006222 ORTHO05D007677 2.4e-73 279.6 220 65.9
FvH4_4g11840 Fragaria vesca HOM05D006222 ORTHO05D007677 3.1e-73 279.3 220 64.1
FAN12G2296 Fragaria x ananassa HOM05D006222 ORTHO05D007677 5.4e-73 278.5 220 64.1
Gohir.A10G136100 Gossypium hirsutum HOM05D006222 ORTHO05D007677 5.4e-73 278.5 219 64.4
Gorai.011G144300 Gossypium raimondii HOM05D006222 ORTHO05D007677 5.4e-73 278.5 219 64.4
Duzib268G0300 Durio zibethinus HOM05D006222 ORTHO05D007677 7.0e-73 278.1 216 64.8
Gohir.D10G130500 Gossypium hirsutum HOM05D006222 ORTHO05D007677 7.0e-73 278.1 219 64.4
COL.COLO4_07298 Corchorus olitorius HOM05D006222 ORTHO05D007677 1.6e-72 276.9 229 62.9
Thecc.04G181000 Theobroma cacao HOM05D006222 ORTHO05D007677 3.5e-72 275.8 215 66.0
Manes.11G113101 Manihot esculenta HOM05D006222 ORTHO05D007677 7.7e-72 274.6 225 61.3
VMungo0720G0284 Vigna mungo HOM05D006222 ORTHO05D007677 7.7e-72 274.6 223 64.1
CANSAT78G1479 Cannabis sativa HOM05D006222 ORTHO05D007677 1.0e-71 274.2 216 64.8
FAN12G2611 Fragaria x ananassa HOM05D006222 ORTHO05D007677 3.8e-71 272.3 226 61.5
Ciclev10021532m.g Citrus clementina HOM05D006222 ORTHO05D007677 1.1e-70 270.8 207 66.7
Eucgr.A00219 Eucalyptus grandis HOM05D006222 ORTHO05D007677 1.1e-70 270.8 216 62.0
ClCG07G016700 Citrullus lanatus HOM05D006222 ORTHO05D007677 2.5e-70 269.6 220 62.7
CsaV3_4G003830 Cucumis sativus L. HOM05D006222 ORTHO05D007677 4.2e-70 268.9 215 61.9
Sabra14G0113700 Salix brachista HOM05D006222 ORTHO05D007677 4.2e-70 268.9 233 59.7
TWI63G0082 Tripterygium wilfordii HOM05D006222 ORTHO05D007677 4.2e-70 268.9 218 62.8
Phvul.007G002100 Phaseolus vulgaris HOM05D006222 ORTHO05D007677 5.5e-70 268.5 216 65.7
Atru.chr3.1674 Acer truncatum HOM05D006222 ORTHO05D007677 9.5e-70 267.7 216 62.5
Duzib212G0460 Durio zibethinus HOM05D006222 ORTHO05D007677 9.5e-70 267.7 223 61.4
GSVIVG01031673001 Vitis vinifera HOM05D006222 ORTHO05D007677 4.0e-68 262.3 225 58.2
SalBow3G0382 Salvia bowleyana HOM05D006222 ORTHO05D007677 6.8e-68 261.5 219 60.7
Sed0019288 Sechium edule HOM05D006222 ORTHO05D007677 6.8e-68 261.5 220 60.5
Rhsim09G0036800 Rhododendron simsii HOM05D006222 ORTHO05D007677 2.6e-67 259.6 208 63.0
THA.LOC104804896 Tarenaya hassleriana HOM05D006222 ORTHO05D007677 3.4e-67 259.2 210 61.9
FAN17G0755 Fragaria x ananassa HOM05D006222 ORTHO05D007677 9.8e-67 257.7 199 65.3
Oeu034479.1 Olea europaea HOM05D006222 ORTHO05D007677 1.7e-66 256.9 214 61.7
A05p03600 Brassica napus HOM05D006222 ORTHO05D007677 4.9e-66 255.4 219 58.0
CSS0005997 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 6.3e-66 255.0 213 60.1
SGA_v2.0_scaffold31G12583 Striga asiatica HOM05D006222 ORTHO05D007677 6.3e-66 255.0 214 60.3
DCAR_027540 Daucus carota HOM05D006222 ORTHO05D007677 8.3e-66 254.6 215 58.1
EL10Ac5g11641 Beta vulgaris HOM05D006222 ORTHO05D007677 1.1e-65 254.2 206 58.7
BcaC02g12413 Brassica carinata HOM05D006222 ORTHO05D007677 1.1e-65 254.2 219 57.5
BraA05t19346Z Brassica rapa HOM05D006222 ORTHO05D007677 1.1e-65 254.2 219 58.0
CSS0002349 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 1.1e-65 254.2 213 60.1
Thhalv10017033m.g Eutrema salsugineum HOM05D006222 ORTHO05D007677 1.8e-65 253.4 219 58.0
Sc07g0007090 Simmondsia chinensis HOM05D006222 ORTHO05D007677 1.8e-65 253.4 205 62.0
Aqoxy5G00038 Aquilegia oxysepala HOM05D006222 ORTHO05D007677 2.4e-65 253.1 207 60.4
Sp4g25240 Schrenkiella parvula HOM05D006222 ORTHO05D007677 2.4e-65 253.1 214 58.9
C04p04200 Brassica napus HOM05D006222 ORTHO05D007677 3.1e-65 252.7 219 57.5
BolC4t22057H Brassica oleracea HOM05D006222 ORTHO05D007677 3.1e-65 252.7 219 57.5
MELO3C017672.2 Cucumis melo HOM05D006222 ORTHO05D007677 1.6e-64 250.4 244 54.5
AL4G41770 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 2.7e-64 249.6 216 57.9
Cc03_g10460 Coffea canephora HOM05D006222 ORTHO05D007677 2.7e-64 249.6 212 58.5
AL401U10010 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 1.0e-63 247.7 216 57.4
Hund13303 Selenicereus undatus HOM05D006222 ORTHO05D007677 1.0e-63 247.7 210 56.2
Carub.0004s2559 Capsella rubella HOM05D006222 ORTHO05D007677 1.7e-63 246.9 216 57.4
AT2G43110 Arabidopsis thaliana HOM05D006222 ORTHO05D007677 3.8e-63 245.7 209 57.4
CDE05G0624 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 5.0e-63 245.4 206 59.7
TAR362G1090 Trochodendron aralioides HOM05D006222 ORTHO05D007677 5.0e-63 245.4 214 57.0
PSO357G0657 Papaver somniferum HOM05D006222 ORTHO05D007677 8.6e-63 244.6 214 57.9
Lj3P863T15 Lonicera japonica HOM05D006222 ORTHO05D007677 1.5e-62 243.8 202 61.4
PSO170G0570 Papaver somniferum HOM05D006222 ORTHO05D007677 1.9e-62 243.4 214 58.9
Aa31LG1G24920 Aethionema arabicum HOM05D006222 ORTHO05D007677 2.5e-62 243.0 222 57.2
CARHR138180 Cardamine hirsuta HOM05D006222 ORTHO05D007677 2.5e-62 243.0 216 56.0
MSTRG.24605 Avicennia marina HOM05D006222 ORTHO05D007677 9.5e-62 241.1 207 59.9
Migut.N00436 Erythranthe guttata HOM05D006222 ORTHO05D007677 1.6e-61 240.4 206 58.3
CDE05G2371 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 8.0e-61 238.0 206 58.7
BcaNung03540 Brassica carinata HOM05D006222 ORTHO05D007677 1.0e-60 237.7 220 56.4
HanXRQChr14g0432081 Helianthus annuus HOM05D006222 ORTHO05D007677 1.0e-60 237.7 219 54.3
Ah.12g062130 Amaranthus hybridus HOM05D006222 ORTHO05D007677 4.0e-60 235.7 207 56.0
PGSC0003DMG400013073 Solanum tuberosum HOM05D006222 ORTHO05D007677 2.6e-59 233.0 206 58.7
ECA232G0640 Erigeron canadensis HOM05D006222 ORTHO05D007677 1.3e-58 230.7 223 52.5
Sopen05g032350 Solanum pennellii HOM05D006222 ORTHO05D007677 1.3e-58 230.7 214 56.1
Potri.014G150100 Populus trichocarpa HOM05D006222 ORTHO05D007677 2.4e-57 226.5 179 65.9
Hma1.2p1_1477F.1_g285900 Hydrangea macrophylla HOM05D006222 ORTHO05D007677 3.2e-57 226.1 160 67.5
FvH4_6g25320 Fragaria vesca HOM05D006222 ORTHO05D007677 4.1e-57 225.7 220 55.5
Nn3g20171 Nelumbo nucifera HOM05D006222 ORTHO05D007677 6.0e-56 221.9 207 57.5
ATR1089G038 Amborella trichopoda HOM05D006222 ORTHO05D007677 1.3e-55 220.7 204 55.4
CAN.G1310.8 Capsicum annuum HOM05D006222 ORTHO05D007677 3.3e-54 216.1 171 63.2
Dinv22662 Davidia involucrata HOM05D006222 ORTHO05D007677 5.6e-54 215.3 179 62.6
Actinidia32943 Actinidia chinensis HOM05D006222 ORTHO05D007677 1.6e-53 213.8 162 61.7
Peaxi162Scf00423g00727 Petunia axillaris HOM05D006222 ORTHO05D007677 4.7e-53 212.2 163 63.8
vmacro22720 Vaccinium macrocarpon HOM05D006222 ORTHO05D007677 2.3e-52 209.9 189 60.8
Os04g0348100 Oryza sativa ssp. japonica HOM05D006222 ORTHO05D007677 3.1e-52 209.5 218 49.5
PGSC0003DMG400023306 Solanum tuberosum HOM05D006222 ORTHO05D007677 6.8e-52 208.4 153 66.7
Ah.12g060860 Amaranthus hybridus HOM05D006222 ORTHO05D007677 3.5e-48 196.1 207 49.3
Lsat_1_v5_gn_2_38021 Lactuca sativa HOM05D006222 ORTHO05D007677 7.8e-48 194.9 178 57.3
unitig_578.g15951 Utricularia gibba HOM05D006222 ORTHO05D007677 1.9e-46 190.3 223 48.0
SMO331G0016 Selaginella moellendorffii HOM05D006222 ORTHO05D007677 4.3e-46 189.1 203 47.8
Solyc05g053880.4 Solanum lycopersicum HOM05D006222 ORTHO05D007677 2.1e-45 186.8 181 56.4
Zm00001eb086320 Zea mays HOM05D006222 ORTHO05D007677 6.8e-44 181.8 178 52.2
AUR62029129 Chenopodium quinoa HOM05D006222 ORTHO05D007677 2.0e-43 180.3 225 45.8
Actinidia35881 Actinidia chinensis HOM05D006222 ORTHO05D007677 2.3e-39 166.8 162 51.2
Mapoly0037s0098 Marchantia polymorpha HOM05D006222 ORTHO05D007677 2.1e-37 160.2 207 41.5
FAN05G2938 Fragaria x ananassa HOM05D006222 ORTHO05D007677 6.8e-36 155.2 134 58.2
QL10p043792 Quercus lobata HOM05D006222 ORTHO05D007677 3.4e-35 152.9 92 79.3
QL10p043789 Quercus lobata HOM05D006222 ORTHO05D007677 4.4e-35 152.5 125 63.2
QL10p047312 Quercus lobata HOM05D006222 ORTHO05D007677 7.6e-35 151.8 92 79.3
QL10p047309 Quercus lobata HOM05D006222 ORTHO05D007677 3.8e-34 149.4 124 62.1
Pp3c6_17250 Physcomitrium patens HOM05D006222 ORTHO05D007677 4.9e-34 149.1 204 38.7
Haze_11067 Corylus avellana HOM05D006222 ORTHO05D007677 8.4e-34 148.3 92 75.0
RhsimUnG0147000 Rhododendron simsii HOM05D006222 ORTHO05D007677 3.9e-31 139.4 236 41.9
Eucgr.L00544 Eucalyptus grandis HOM05D006222 ORTHO05D007677 1.1e-30 137.9 125 57.6
AUR62014992 Chenopodium quinoa HOM05D006222 ORTHO05D007677 3.3e-30 136.3 177 40.7
CBR_g19109 Chara braunii HOM05D006222 ORTHO05D007677 1.6e-29 134.0 201 38.3
Rhsim04G0094000 Rhododendron simsii HOM05D006222 ORTHO05D007677 1.4e-28 131.0 264 38.3
MD13G1276400 Malus domestica HOM05D006222 ORTHO05D007677 4.0e-28 129.4 125 58.4
Nitab4.5_0000161g0130 Nicotiana tabacum HOM05D006222 ORTHO05D007677 5.2e-28 129.0 214 36.4
CSS0048231 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 4.2e-25 119.4 95 63.2
Nitab4.5_0007578g0020 Nicotiana tabacum HOM05D006222 ORTHO05D007677 4.3e-22 109.4 214 32.2
HPP92_024563 Vanilla planifolia HOM05D006222 ORTHO05D007677 4.3e-22 109.4 82 63.4
Actinidia27187 Actinidia chinensis HOM05D006222 ORTHO05D007677 7.3e-22 108.6 141 47.5
Haze_11066 Corylus avellana HOM05D006222 ORTHO05D007677 6.2e-21 105.5 99 57.6
Duzib268G0844 Durio zibethinus HOM05D006222 ORTHO05D007677 7.1e-17 92.0 100 50.0
Ah.12g060290 Amaranthus hybridus HOM05D006222 ORTHO05D007677 1.0e-15 88.2 59 66.1
AagrBONN_evm.TU.Sc2ySwM_362.227 Anthoceros agrestis HOM05D006222 ORTHO05D007677 2.4e-09 67.0 150 32.7
SEGI_30148 Sequoiadendron giganteum HOM05D006222 ORTHO05D007677 1.6e-08 64.3 41 68.3
A03p23980 Brassica napus HOM05D006222 ORTHO05D007677 6.7e-07 58.9 50 52.0


User provided reference genes

Program Settings