Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 2.5e-52 208.4 98 100.0
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 2.5e-52 208.4 98 100.0
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 3.3e-52 208.0 97 100.0
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 1.5e-44 182.6 96 88.5
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 1.3e-43 179.5 96 87.5
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 2.2e-43 178.7 95 88.4
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 2.8e-43 178.3 96 87.5
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 2.8e-43 178.3 95 88.4
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 8.2e-43 176.8 95 86.3
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 1.2e-41 172.9 97 86.6
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 1.2e-41 172.9 97 86.6
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 1.2e-41 172.9 95 85.3
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 2.6e-41 171.8 94 86.2
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 3.4e-41 171.4 94 85.1
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 3.8e-40 167.9 92 85.9
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 8.5e-40 166.8 99 78.8
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 1.1e-39 166.4 99 81.8
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 1.4e-39 166.0 99 76.8
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 2.5e-39 165.2 97 80.4
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 3.2e-39 164.9 99 79.8
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 5.5e-39 164.1 99 80.8
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 5.5e-39 164.1 99 79.8
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 2.1e-38 162.2 99 77.8
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 4.6e-38 161.0 98 76.5
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 4.6e-38 161.0 99 78.8
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 6.1e-38 160.6 99 77.8
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 6.1e-38 160.6 99 76.8
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 7.9e-38 160.2 99 74.7
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 1.4e-37 159.5 96 78.1
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.8e-37 159.1 96 79.2
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 3.0e-37 158.3 91 83.5
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 3.0e-37 158.3 79 91.1
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 3.0e-37 158.3 79 91.1
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 3.9e-37 157.9 99 75.8
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 6.7e-37 157.1 95 74.7
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 8.8e-37 156.8 95 76.8
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 8.8e-37 156.8 96 78.1
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 8.8e-37 156.8 80 87.5
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 1.5e-36 156.0 101 72.3
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 2.0e-36 155.6 95 75.8
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 2.5e-36 155.2 98 74.5
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 2.5e-36 155.2 99 75.8
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 3.3e-36 154.8 95 73.7
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 4.3e-36 154.5 86 82.6
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 5.7e-36 154.1 79 86.1
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 5.7e-36 154.1 95 75.8
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 9.7e-36 153.3 81 81.5
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 1.3e-35 152.9 91 79.1
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.3e-35 152.9 87 80.5
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.7e-35 152.5 79 84.8
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 2.2e-35 152.1 97 73.2
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 2.2e-35 152.1 89 79.8
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 2.2e-35 152.1 98 75.5
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 2.2e-35 152.1 90 75.6
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 3.7e-35 151.4 83 79.5
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 3.7e-35 151.4 87 80.5
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 3.7e-35 151.4 87 80.5
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 3.7e-35 151.4 87 80.5
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 4.8e-35 151.0 91 78.0
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 6.3e-35 150.6 89 75.3
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 6.3e-35 150.6 97 74.2
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 6.3e-35 150.6 95 72.6
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 6.3e-35 150.6 80 82.5
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 8.2e-35 150.2 99 71.7
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 8.2e-35 150.2 99 71.7
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 8.2e-35 150.2 95 73.7
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 1.1e-34 149.8 80 82.5
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 1.1e-34 149.8 96 70.8
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 1.1e-34 149.8 96 70.8
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 1.4e-34 149.4 93 75.3
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 1.4e-34 149.4 99 71.7
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 1.4e-34 149.4 82 78.0
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 1.4e-34 149.4 118 64.4
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 1.4e-34 149.4 81 82.7
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 3.1e-34 148.3 99 70.7
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 3.1e-34 148.3 92 75.0
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 5.3e-34 147.5 99 70.7
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 6.9e-34 147.1 96 70.8
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 1.2e-33 146.4 78 79.5
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 1.5e-33 146.0 79 81.0
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 2.0e-33 145.6 79 81.0
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 2.0e-33 145.6 99 72.7
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 5.9e-33 144.1 99 68.7
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 5.9e-33 144.1 79 78.5
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 7.7e-33 143.7 95 70.5
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 1.3e-32 142.9 79 79.7
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.3e-32 142.9 99 68.7
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.7e-32 142.5 66 97.0
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 1.7e-32 142.5 89 77.5
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 2.9e-32 141.7 76 81.6
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 5.0e-32 141.0 77 80.5
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 5.0e-32 141.0 77 80.5
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 5.0e-32 141.0 77 80.5
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 5.0e-32 141.0 77 80.5
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 5.0e-32 141.0 98 70.4
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 6.5e-32 140.6 118 63.6
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 8.5e-32 140.2 80 75.0
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 1.4e-31 139.4 79 77.2
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 1.4e-31 139.4 89 73.0
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 4.2e-31 137.9 79 75.9
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 4.2e-31 137.9 79 75.9
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 7.9e-30 133.7 76 77.6
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 2.3e-29 132.1 77 74.0
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 3.0e-29 131.7 66 87.9
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 3.0e-29 131.7 68 88.2
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 5.1e-29 131.0 75 74.7
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 2.6e-28 128.6 86 66.3
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 4.4e-28 127.9 66 81.8
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 5.7e-28 127.5 89 65.2
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 4.1e-26 121.3 72 75.0
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 5.3e-26 120.9 65 78.5
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 5.9e-25 117.5 83 61.4
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 1.3e-24 116.3 89 57.3
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 1.7e-24 115.9 91 63.7
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 5.0e-24 114.4 63 77.8
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 3.2e-23 111.7 66 72.7
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 1.2e-22 109.8 63 76.2
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 4.7e-22 107.8 62 75.8
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 8.0e-22 107.1 83 59.0
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 8.0e-22 107.1 82 63.4
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 1.4e-21 106.3 88 54.5
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 6.7e-21 104.0 63 71.4
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.1e-20 103.2 53 79.2
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 2.0e-20 102.4 64 70.3
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 1.3e-19 99.8 68 67.6
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 1.5e-15 86.3 65 63.1
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 1.9e-15 85.9 63 65.1
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 5.5e-15 84.3 67 61.2
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 7.2e-15 84.0 73 52.1
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 2.1e-14 82.4 82 47.6
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 3.6e-14 81.6 46 78.3
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 1.0e-13 80.1 80 47.5
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 6.8e-13 77.4 80 51.2
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 6.8e-13 77.4 51 64.7
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 3.4e-12 75.1 33 97.0
CBR_g29697 Chara braunii HOM05D035488 ORTHO05D007319 1.1e-07 60.1 48 54.2


User provided reference genes

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