Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RYQ522 Arachis hypogaea HOM05D000411 ORTHO05D003077 1.3e-35 152.5 78 100.0
arahy.Tifrunner.gnm1.ann1.TC1WQ3 Arachis hypogaea HOM05D001686 ORTHO05D001645 1.2e-12 76.3 69 65.2
arahy.Tifrunner.gnm1.ann1.G2X0JI Arachis hypogaea HOM05D000944 ORTHO05D086346 7.8e-12 73.6 79 54.4
Lj4g0003121 Lotus japonicus HOM05D000531 ORTHO05D003077 8.9e-08 60.1 40 77.5
arahy.Tifrunner.gnm1.ann1.IFT9HD Arachis hypogaea HOM05D003664 ORTHO05D003077 9.8e-07 56.6 34 88.2
arahy.Tifrunner.gnm1.ann1.RT05XZ Arachis hypogaea HOM05D003664 ORTHO05D003077 9.8e-07 56.6 34 88.2
arahy.Tifrunner.gnm1.ann1.S6MTJ1 Arachis hypogaea HOM05D003664 ORTHO05D003077 9.8e-07 56.6 34 88.2
Glyma.08G077400 Glycine max HOM05D003664 ORTHO05D003077 9.8e-07 56.6 36 83.3
DCAR_010508 Daucus carota HOM05D000411 ORTHO05D000310 1.3e-06 56.2 32 78.1
VMungo0251G1704 Vigna mungo HOM05D000531 ORTHO05D003077 1.3e-06 56.2 38 78.9
Eucgr.G00615 Eucalyptus grandis HOM05D003664 ORTHO05D003077 2.9e-06 55.1 39 74.4
arahy.Tifrunner.gnm1.ann1.CCQT9P Arachis hypogaea HOM05D000411 ORTHO05D000310 3.7e-06 54.7 25 96.0
arahy.Tifrunner.gnm1.ann1.P8EEHZ Arachis hypogaea HOM05D000444 ORTHO05D000489 3.7e-06 54.7 36 80.6
arahy.Tifrunner.gnm1.ann1.Q10QVY Arachis hypogaea HOM05D000411 ORTHO05D000310 3.7e-06 54.7 25 96.0
C02p30190 Brassica napus HOM05D000411 ORTHO05D000310 3.7e-06 54.7 27 88.9
Lalb_Chr13g0299611 Lupinus albus HOM05D000411 ORTHO05D000310 3.7e-06 54.7 27 88.9
Manes.04G141300 Manihot esculenta HOM05D000411 ORTHO05D000310 3.7e-06 54.7 25 96.0
Manes.11G023900 Manihot esculenta HOM05D000411 ORTHO05D000310 3.7e-06 54.7 25 92.0
Phvul.002G203300 Phaseolus vulgaris HOM05D003664 ORTHO05D003077 3.7e-06 54.7 36 80.6
Atru.chr1.3790 Acer truncatum HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Atru.chr7.1624 Acer truncatum HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Actinidia26045 Actinidia chinensis HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Actinidia32162 Actinidia chinensis HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Actinidia38456 Actinidia chinensis HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Actinidia39098 Actinidia chinensis HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Actinidia39708 Actinidia chinensis HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Ah.08g216490 Amaranthus hybridus HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
ATR0789G032 Amborella trichopoda HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Aqoxy7G01168 Aquilegia oxysepala HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 6.4e-06 53.9 25 92.0
AL3G48780 Arabidopsis lyrata HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
AL7G26880 Arabidopsis lyrata HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
AT2G19470 Arabidopsis thaliana HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
AT4G26100 Arabidopsis thaliana HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
arahy.Tifrunner.gnm1.ann1.UDXZ3L Arachis hypogaea HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
MSTRG.22569 Avicennia marina HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
MSTRG.9504 Avicennia marina HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
EL10Ac7g16371 Beta vulgaris HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
BcaB03g15010 Brassica carinata HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
BcaB05g24771 Brassica carinata HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
BcaC03g15406 Brassica carinata HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
BcaC08g46713 Brassica carinata HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
A02p18160 Brassica napus HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
A07p38870 Brassica napus HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
C06p47020 Brassica napus HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
BolC2t09069H Brassica oleracea HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
BolC6t39742H Brassica oleracea HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
BraA02t06861Z Brassica rapa HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
BraA07t31440Z Brassica rapa HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
CSS0008582 Camellia sinensis var. sinensis HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
CSS0032918 Camellia sinensis var. sinensis HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
CSS0035061 Camellia sinensis var. sinensis HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
CSS0044784 Camellia sinensis var. sinensis HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
CSS0049748 Camellia sinensis var. sinensis HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
CAN.G57.14 Capsicum annuum HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
CAN.G825.27 Capsicum annuum HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
CARHR233620 Cardamine hirsuta HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
CARHR270760 Cardamine hirsuta HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Cpa.g.sc28.150 Carica papaya HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Cfa003554 Carpinus fangiana HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
CiPaw.01G222100 Carya illinoinensis HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
CiPaw.02G137900 Carya illinoinensis HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
AUR62001514 Chenopodium quinoa HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
AUR62009855 Chenopodium quinoa HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
AUR62029036 Chenopodium quinoa HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Ca_21288_v3 Cicer arietinum L. HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
ClCG11G001690 Citrullus lanatus HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Ciclev10008160m.g Citrus clementina HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Ciclev10025527m.g Citrus clementina HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Cc04_g01700 Coffea canephora HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
COL.COLO4_18178 Corchorus olitorius HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Haze_15994 Corylus avellana HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
MELO3C004631.2 Cucumis melo HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
CsaV3_2G001390 Cucumis sativus L. HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
DCAR_026408 Daucus carota HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
DCAR_028270 Daucus carota HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Dinv37894 Davidia involucrata HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Duzib150G0571 Durio zibethinus HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Duzib187G1848 Durio zibethinus HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
ECA236G0622 Erigeron canadensis HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Migut.D00956 Erythranthe guttata HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Eucgr.F03150 Eucalyptus grandis HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Eucgr.J02844 Eucalyptus grandis HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Glyma.05G122400 Glycine max HOM05D000531 ORTHO05D003077 6.4e-06 53.9 36 80.6
Glyma.07G007600 Glycine max HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Glyma.08G190300 Glycine max HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Glyma.13G105900 Glycine max HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Glyma.15G171100 Glycine max HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Glyma.17G053500 Glycine max HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Gohir.A05G031000 Gossypium hirsutum HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Gohir.A13G192900 Gossypium hirsutum HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Gohir.D05G032400 Gossypium hirsutum HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Gohir.D13G198200 Gossypium hirsutum HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Gorai.009G032600 Gossypium raimondii HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Gorai.013G227100 Gossypium raimondii HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
HanXRQChr04g0126131 Helianthus annuus HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
HanXRQChr10g0312381 Helianthus annuus HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Hma1.2p1_0496F.1_g165950 Hydrangea macrophylla HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Hma1.2p1_1128F.1_g259720 Hydrangea macrophylla HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Lsat_1_v5_gn_1_35840 Lactuca sativa HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Lsat_1_v5_gn_8_86601 Lactuca sativa HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Lj5C41G6 Lonicera japonica HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Lj7A679G75 Lonicera japonica HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Lj9C520G11 Lonicera japonica HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Lj4g0017138 Lotus japonicus HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Lalb_Chr11g0074541 Lupinus albus HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Lalb_Chr23g0276481 Lupinus albus HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
MBI01_g21124_MAGBIO Magnolia biondii HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
MBI04_g36905_MAGBIO Magnolia biondii HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
MD02G1082400 Malus domestica HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
MD15G1210300 Malus domestica HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Manes.03G035700 Manihot esculenta HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Manes.16G100200 Manihot esculenta HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Medtr4g126010 Medicago truncatula HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Nn8g38798 Nelumbo nucifera HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Nitab4.5_0005003g0160 Nicotiana tabacum HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Nitab4.5_0005918g0070 Nicotiana tabacum HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Oeu009701.1 Olea europaea HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
PSO063G1053 Papaver somniferum HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
PSO210G0658 Papaver somniferum HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
PSO210G7352 Papaver somniferum HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
PSO832G2411 Papaver somniferum HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Phvul.003G135100 Phaseolus vulgaris HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Phvul.009G230800 Phaseolus vulgaris HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Potri.001G197600 Populus trichocarpa HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Potri.003G043500 Populus trichocarpa HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Potri.006G147800 Populus trichocarpa HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Potri.018G065900 Populus trichocarpa HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
PGR102G2797 Punica granatum HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
PGR119G1082 Punica granatum HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
QL05p009695 Quercus lobata HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Rhsim03G0231400 Rhododendron simsii HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Rhsim08G0235500 Rhododendron simsii HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Rhsim12G0207900 Rhododendron simsii HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
RcHm_v2.0_Chr2g0093731 Rosa chinensis HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Sabra01G0143800 Salix brachista HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Sabra03G0022800 Salix brachista HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Sed0013014 Sechium edule HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Hund18700 Selenicereus undatus HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Hund20821 Selenicereus undatus HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Solyc03g121820.3 Solanum lycopersicum HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Solyc06g062790.3 Solanum lycopersicum HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Solyc07g040720.3 Solanum lycopersicum HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Sopen03g040630 Solanum pennellii HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Sopen06g022240 Solanum pennellii HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Sopen07g019460 Solanum pennellii HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
PGSC0003DMG400002577 Solanum tuberosum HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
PGSC0003DMG400004854 Solanum tuberosum HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
PGSC0003DMG400032791 Solanum tuberosum HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
SGA_v2.0_scaffold68G22901 Striga asiatica HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
THA.LOC104811750 Tarenaya hassleriana HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
THA.LOC104813495 Tarenaya hassleriana HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Thecc.09G085600 Theobroma cacao HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
TPR.G9455 Trifolium pratense HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
TWI32G1024 Tripterygium wilfordii HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
TWI63G0056 Tripterygium wilfordii HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
TAR383G0633 Trochodendron aralioides HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
TAR626G1401 Trochodendron aralioides HOM05D002096 ORTHO05D002203 6.4e-06 53.9 25 92.0
unitig_52.g17103 Utricularia gibba HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
unitig_62.g23753 Utricularia gibba HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
vmacro06301 Vaccinium macrocarpon HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
vmacro17036 Vaccinium macrocarpon HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
HPP92_005504 Vanilla planifolia HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
VMungo1215G2392 Vigna mungo HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
VMungo1309G2991 Vigna mungo HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
GSVIVG01015176001 Vitis vinifera HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
GSVIVG01016807001 Vitis vinifera HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Zm00001eb155250 Zea mays HOM05D000411 ORTHO05D000310 6.4e-06 53.9 25 92.0
Actinidia25241 Actinidia chinensis HOM05D000411 ORTHO05D000310 8.3e-06 53.5 24 95.8
Ca_23339_v3 Cicer arietinum L. HOM05D000411 ORTHO05D000310 8.3e-06 53.5 25 88.0
Dinv42337 Davidia involucrata HOM05D000411 ORTHO05D000310 8.3e-06 53.5 25 88.0
Glyma.09G065200 Glycine max HOM05D000411 ORTHO05D000310 8.3e-06 53.5 25 88.0
Hma1.2p1_0672F.1_g201030 Hydrangea macrophylla HOM05D000411 ORTHO05D000310 8.3e-06 53.5 25 88.0
Lalb_Chr04g0263281 Lupinus albus HOM05D000411 ORTHO05D000310 8.3e-06 53.5 25 88.0
Medtr2g099670 Medicago truncatula HOM05D000411 ORTHO05D000310 8.3e-06 53.5 25 88.0
Medtr8g018310 Medicago truncatula HOM05D000411 ORTHO05D000310 8.3e-06 53.5 25 88.0
Psat4g186160 Pisum sativum HOM05D000411 ORTHO05D000310 8.3e-06 53.5 25 88.0
Psat5g290280 Pisum sativum HOM05D000411 ORTHO05D000310 8.3e-06 53.5 25 88.0
TPR.G7894 Trifolium pratense HOM05D000411 ORTHO05D000310 8.3e-06 53.5 25 88.0
HPP92_000608 Vanilla planifolia HOM05D000411 ORTHO05D000310 8.3e-06 53.5 24 95.8
Zm00001eb361220 Zea mays HOM05D000411 ORTHO05D000310 8.3e-06 53.5 25 88.0


User provided reference genes

Program Settings