Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 7.7e-89 330.5 170 100.0
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 7.2e-71 270.8 170 84.7
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 7.2e-71 270.8 170 85.3
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 2.7e-57 225.7 170 71.8
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 1.0e-56 223.8 170 70.6
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 2.3e-56 222.6 170 71.2
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 8.6e-56 220.7 170 70.0
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 1.6e-54 216.5 170 70.0
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 4.7e-54 214.9 175 69.1
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 8.0e-54 214.2 170 66.5
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 1.2e-52 210.3 170 65.3
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 5.7e-52 208.0 170 67.6
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 9.8e-52 207.2 170 67.1
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 1.7e-51 206.5 170 65.3
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 2.2e-51 206.1 170 67.1
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 2.9e-51 205.7 170 67.6
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 3.7e-51 205.3 170 65.3
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 3.7e-51 205.3 170 65.9
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 3.7e-51 205.3 170 64.7
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 3.7e-51 205.3 169 66.3
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 4.9e-51 204.9 170 67.6
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 1.1e-50 203.8 170 65.9
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 1.4e-50 203.4 170 65.9
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 1.4e-50 203.4 170 66.5
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 1.8e-50 203.0 170 65.9
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 2.4e-50 202.6 170 65.9
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 2.4e-50 202.6 170 64.7
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 3.2e-50 202.2 170 64.7
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 3.2e-50 202.2 170 63.5
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 4.1e-50 201.8 170 64.1
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 4.1e-50 201.8 170 64.7
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 7.0e-50 201.1 170 66.5
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 9.2e-50 200.7 171 63.7
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 9.2e-50 200.7 170 65.3
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 1.2e-49 200.3 170 65.9
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.2e-49 200.3 170 66.5
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 1.2e-49 200.3 171 66.7
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 1.6e-49 199.9 170 62.4
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 2.0e-49 199.5 172 62.8
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 2.0e-49 199.5 172 62.8
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 2.0e-49 199.5 172 62.8
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 2.0e-49 199.5 170 65.9
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 2.7e-49 199.1 170 65.9
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 3.5e-49 198.7 170 65.9
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 4.6e-49 198.4 170 65.3
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 1.0e-48 197.2 170 66.5
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 1.0e-48 197.2 170 66.5
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 1.3e-48 196.8 170 62.9
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 1.3e-48 196.8 170 62.9
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 1.3e-48 196.8 170 62.9
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 1.3e-48 196.8 170 64.1
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 1.7e-48 196.4 170 64.7
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 2.3e-48 196.1 170 62.4
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 2.3e-48 196.1 170 61.8
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 3.0e-48 195.7 183 61.7
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 3.9e-48 195.3 170 61.2
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 3.9e-48 195.3 170 63.5
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 6.6e-48 194.5 168 63.1
Medtr5g015850 Medicago truncatula HOM05D004802 ORTHO05D005591 6.6e-48 194.5 171 64.3
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 6.6e-48 194.5 170 62.4
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 8.6e-48 194.1 170 63.5
HPP92_014441 Vanilla planifolia HOM05D004802 ORTHO05D005591 8.6e-48 194.1 171 65.5
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 1.1e-47 193.7 170 61.8
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 1.1e-47 193.7 170 62.9
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 1.5e-47 193.4 170 63.5
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.5e-47 193.4 170 62.9
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 1.5e-47 193.4 170 62.4
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 1.5e-47 193.4 170 65.9
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 1.9e-47 193.0 170 64.1
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 1.9e-47 193.0 170 64.1
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 1.9e-47 193.0 172 63.4
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 2.5e-47 192.6 170 62.4
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 3.3e-47 192.2 171 60.8
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 3.3e-47 192.2 170 62.9
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 4.3e-47 191.8 172 63.4
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 4.3e-47 191.8 172 63.4
COL.COLO4_24762 Corchorus olitorius HOM05D004802 ORTHO05D005591 5.6e-47 191.4 170 62.9
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 7.3e-47 191.0 178 62.9
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 9.5e-47 190.7 170 64.1
TWI32G0003 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 9.5e-47 190.7 170 63.5
Aa31LG3G15940 Aethionema arabicum HOM05D004802 ORTHO05D005591 1.2e-46 190.3 170 60.0
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 1.2e-46 190.3 171 60.8
BcaC07g42500 Brassica carinata HOM05D004802 ORTHO05D005591 1.6e-46 189.9 171 60.8
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 2.1e-46 189.5 165 61.8
Duzib068G0850 Durio zibethinus HOM05D004802 ORTHO05D005591 2.1e-46 189.5 173 62.4
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 2.1e-46 189.5 170 62.9
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 2.8e-46 189.1 157 65.0
Ciclev10022742m.g Citrus clementina HOM05D004802 ORTHO05D005591 2.8e-46 189.1 170 61.8
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 3.6e-46 188.7 172 61.6
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 4.7e-46 188.3 157 64.3
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 6.2e-46 188.0 166 62.7
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 8.0e-46 187.6 171 64.3
Nitab4.5_0001422g0100 Nicotiana tabacum HOM05D004802 ORTHO05D005591 8.0e-46 187.6 140 70.7
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 1.0e-45 187.2 225 52.4
Thhalv10009035m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 1.8e-45 186.4 170 60.6
Peaxi162Scf00017g02344 Petunia axillaris HOM05D004802 ORTHO05D005591 1.8e-45 186.4 170 62.9
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 1.8e-45 186.4 170 62.9
TWI75G1644 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 2.3e-45 186.0 170 62.9
MD06G1178500 Malus domestica HOM05D004802 ORTHO05D005591 4.0e-45 185.3 134 71.6
Gohir.A12G276300 Gossypium hirsutum HOM05D004802 ORTHO05D005591 5.2e-45 184.9 171 61.4
Gorai.008G297400 Gossypium raimondii HOM05D004802 ORTHO05D005591 5.2e-45 184.9 171 61.4
Thhalv10014955m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 6.8e-45 184.5 170 58.8
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 6.8e-45 184.5 170 60.0
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 1.2e-44 183.7 167 62.3
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 1.5e-44 183.3 170 60.0
Gohir.D12G276900 Gossypium hirsutum HOM05D004802 ORTHO05D005591 2.0e-44 183.0 171 60.8
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 3.4e-44 182.2 170 61.8
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 4.4e-44 181.8 170 59.4
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 9.8e-44 180.6 170 59.4
Atru.chr9.2421 Acer truncatum HOM05D004802 ORTHO05D005591 1.3e-43 180.3 181 59.1
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 2.2e-43 179.5 170 60.0
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.9e-43 179.1 170 58.8
Aqoxy3G01788 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 3.7e-43 178.7 170 58.2
ClCG06G016810 Citrullus lanatus HOM05D004802 ORTHO05D005591 4.9e-43 178.3 92 95.7
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 4.9e-43 178.3 157 63.7
Zm00001eb378540 Zea mays HOM05D004802 ORTHO05D005591 4.9e-43 178.3 168 61.9
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.4e-42 176.0 168 58.9
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 4.1e-42 175.3 159 61.0
Os06g0128500 Oryza sativa ssp. japonica HOM05D004802 ORTHO05D005591 1.2e-41 173.7 168 59.5
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.0e-40 170.6 141 63.8
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 1.7e-40 169.9 130 65.4
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 2.3e-40 169.5 88 94.3
QL03p067058 Quercus lobata HOM05D004802 ORTHO05D005591 8.6e-40 167.5 89 91.0
FAN04G1836 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.1e-38 162.9 140 61.4
RcHm_v2.0_Chr3g0484411 Rosa chinensis HOM05D004802 ORTHO05D005591 1.4e-37 160.2 88 88.6
Nitab4.5_0008768g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 5.2e-37 158.3 231 45.9
CiPaw.11G030400 Carya illinoinensis HOM05D004802 ORTHO05D005591 9.8e-36 154.1 134 64.2
Haze_07452 Corylus avellana HOM05D004802 ORTHO05D005591 1.4e-34 150.2 136 61.0
Cc00_g07690 Coffea canephora HOM05D004802 ORTHO05D005591 4.7e-30 135.2 135 56.3
Pp3c17_20320 Physcomitrium patens HOM05D004802 ORTHO05D005591 4.0e-29 132.1 137 51.1
Mapoly0009s0030 Marchantia polymorpha HOM05D004802 ORTHO05D005591 7.6e-28 127.9 170 48.2
Nitab4.5_0000003g0430 Nicotiana tabacum HOM05D004802 ORTHO05D005591 3.5e-25 119.0 172 47.7
Nn2g12605 Nelumbo nucifera HOM05D004802 ORTHO05D005591 1.7e-24 116.7 124 53.2
RcHm_v2.0_Chr3g0484341 Rosa chinensis HOM05D004802 ORTHO05D005591 3.0e-24 115.9 63 92.1
CBR_g30055 Chara braunii HOM05D004802 ORTHO05D005591 1.5e-23 113.6 90 64.4
Cc00_g30360 Coffea canephora HOM05D004802 ORTHO05D005591 5.6e-23 111.7 132 50.8
Hma1.2p1_0107F.1_g051480 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.6e-22 110.2 60 90.0
SHI01132 Sapria himalayana HOM05D004802 ORTHO05D005591 2.4e-21 106.3 89 64.0
SMO228G0088 Selaginella moellendorffii HOM05D004802 ORTHO05D005591 7.6e-20 101.3 86 55.8
A06p04970 Brassica napus HOM05D004802 ORTHO05D005591 1.7e-16 90.1 124 43.5
AagrBONN_evm.TU.Sc2ySwM_368.3252 Anthoceros agrestis HOM05D004802 ORTHO05D005591 3.0e-16 89.4 54 75.9
MCO15G004 Micromonas commoda HOM05D004802 ORTHO05D005591 3.6e-14 82.4 91 49.5
Pp3c14_16960 Physcomitrium patens HOM05D004802 ORTHO05D005591 4.0e-13 79.0 63 63.5
Haze_26898 Corylus avellana HOM05D004802 ORTHO05D005591 9.0e-13 77.8 68 52.9
A09p37440 Brassica napus HOM05D004802 ORTHO05D005591 4.9e-11 72.0 49 71.4
Haze_07453 Corylus avellana HOM05D004802 ORTHO05D005591 9.3e-10 67.8 35 91.4
BolC3t13075H Brassica oleracea HOM05D004802 ORTHO05D005591 9.6e-07 57.8 29 86.2
BcaC02g11004 Brassica carinata HOM05D004802 ORTHO05D005591 1.6e-06 57.0 43 67.4
C04p22280 Brassica napus HOM05D004802 ORTHO05D020149 1.6e-06 57.0 43 67.4
CSS0004783 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 1.6e-06 57.0 62 56.5
Cfa024847 Carpinus fangiana HOM05D004802 ORTHO05D005591 2.8e-06 56.2 71 42.3
PRCOL_00002926 Prasinoderma coloniale HOM05D004802 ORTHO05D005591 4.8e-06 55.5 98 41.8
SHI01130 Sapria himalayana HOM05D004802 ORTHO05D005591 6.2e-06 55.1 59 55.9


User provided reference genes

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