Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RXUH3Q Arachis hypogaea HOM05D016848 ORTHO05D014290 1.2e-172 609.8 312 100.0
arahy.Tifrunner.gnm1.ann1.N0CYFU Arachis hypogaea HOM05D016848 ORTHO05D014290 1.0e-67 261.2 179 83.2
arahy.Tifrunner.gnm1.ann1.Z2IQ37 Arachis hypogaea HOM05D016848 ORTHO05D014290 7.5e-66 255.0 179 76.0
arahy.Tifrunner.gnm1.ann1.N324GM Arachis hypogaea HOM05D016848 ORTHO05D014290 4.7e-60 235.7 185 74.6
arahy.Tifrunner.gnm1.ann1.U7DS0H Arachis hypogaea HOM05D016848 ORTHO05D014290 6.0e-47 192.2 182 65.9
arahy.Tifrunner.gnm1.ann1.NB22TV Arachis hypogaea HOM05D016848 ORTHO05D014290 4.4e-42 176.0 184 63.0
arahy.Tifrunner.gnm1.ann1.05QLFH Arachis hypogaea HOM05D002501 ORTHO05D014290 9.9e-42 174.9 183 63.9
arahy.Tifrunner.gnm1.ann1.C4UAPE Arachis hypogaea HOM05D003325 ORTHO05D003852 3.7e-20 103.2 67 76.1
arahy.Tifrunner.gnm1.ann1.XMC2I2 Arachis hypogaea HOM05D003325 ORTHO05D003852 4.8e-20 102.8 63 79.4
arahy.Tifrunner.gnm1.ann1.CV9S7K Arachis hypogaea HOM05D005557 ORTHO05D006748 3.9e-14 83.2 40 95.0
arahy.Tifrunner.gnm1.ann1.HVCV5S Arachis hypogaea HOM05D004618 ORTHO05D005318 3.9e-14 83.2 47 83.0
QL10p002570 Quercus lobata HOM05D003325 ORTHO05D003852 1.1e-13 81.6 56 66.1
arahy.Tifrunner.gnm1.ann1.ER7ZFF Arachis hypogaea HOM05D000879 ORTHO05D013762 7.4e-13 79.0 168 40.5
Glyma.04G196900 Glycine max HOM05D003325 ORTHO05D003852 1.3e-12 78.2 56 67.9
arahy.Tifrunner.gnm1.ann1.CTZ7GB Arachis hypogaea HOM05D004618 ORTHO05D005318 1.6e-12 77.8 40 90.0
Dinv23165 Davidia involucrata HOM05D003325 ORTHO05D003852 2.2e-12 77.4 64 54.7
Phvul.009G165200 Phaseolus vulgaris HOM05D003325 ORTHO05D003852 3.7e-12 76.6 60 63.3
Ca_16056_v3 Cicer arietinum L. HOM05D003325 ORTHO05D003852 6.3e-12 75.9 56 64.3
arahy.Tifrunner.gnm1.ann1.56M64E Arachis hypogaea HOM05D005557 ORTHO05D006748 1.1e-11 75.1 39 89.7
Glyma.06G168700 Glycine max HOM05D003325 ORTHO05D003852 1.1e-11 75.1 86 48.8
VMungo1309G1507 Vigna mungo HOM05D003325 ORTHO05D003852 2.4e-11 73.9 60 61.7
arahy.Tifrunner.gnm1.ann1.4YN66T Arachis hypogaea HOM05D002240 ORTHO05D014290 3.1e-11 73.6 48 95.8
Cpa.g.sc13.92 Carica papaya HOM05D003325 ORTHO05D003852 3.1e-11 73.6 58 62.1
Potri.012G100500 Populus trichocarpa HOM05D003325 ORTHO05D003852 4.1e-11 73.2 57 56.1
TWI14G0714 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 4.1e-11 73.2 84 46.4
arahy.Tifrunner.gnm1.ann1.W4EMGT Arachis hypogaea HOM05D000879 ORTHO05D013762 6.9e-11 72.4 51 90.2
Psat5g052120 Pisum sativum HOM05D003325 ORTHO05D003852 6.9e-11 72.4 73 53.4
QL10p002524 Quercus lobata HOM05D003325 ORTHO05D003852 6.9e-11 72.4 57 59.6
Thecc.03G131500 Theobroma cacao HOM05D003325 ORTHO05D003852 6.9e-11 72.4 55 60.0
MSTRG.11269 Avicennia marina HOM05D003325 ORTHO05D003852 9.0e-11 72.0 58 56.9
COL.COLO4_07120 Corchorus olitorius HOM05D003325 ORTHO05D003852 1.2e-10 71.6 108 42.6
Migut.I00547 Erythranthe guttata HOM05D003325 ORTHO05D003852 1.2e-10 71.6 58 55.2
Lj1g0000526 Lotus japonicus HOM05D003325 ORTHO05D003852 1.2e-10 71.6 56 64.3
QL10p002543 Quercus lobata HOM05D003325 ORTHO05D003852 1.2e-10 71.6 122 37.7
FvH4_5g08560 Fragaria vesca HOM05D003325 ORTHO05D003852 1.5e-10 71.2 62 54.8
FAN04G0895 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.5e-10 71.2 62 54.8
FAN18G4277 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.5e-10 71.2 62 54.8
Actinidia25563 Actinidia chinensis HOM05D003325 ORTHO05D003852 2.0e-10 70.9 60 55.0
Gohir.A03G053300 Gossypium hirsutum HOM05D003325 ORTHO05D003852 2.0e-10 70.9 54 63.0
Gohir.D03G113600 Gossypium hirsutum HOM05D003325 ORTHO05D003852 2.0e-10 70.9 54 63.0
Gorai.003G119900 Gossypium raimondii HOM05D003325 ORTHO05D003852 2.0e-10 70.9 54 63.0
arahy.Tifrunner.gnm1.ann1.2UY518 Arachis hypogaea HOM05D000879 ORTHO05D013762 2.6e-10 70.5 53 83.0
RcHm_v2.0_Chr7g0189831 Rosa chinensis HOM05D003325 ORTHO05D003852 2.6e-10 70.5 61 57.4
Thecc.03G131600 Theobroma cacao HOM05D003325 ORTHO05D003852 2.6e-10 70.5 52 63.5
Medtr3g099090 Medicago truncatula HOM05D003325 ORTHO05D003852 3.4e-10 70.1 79 46.8
Potri.015G098700 Populus trichocarpa HOM05D003325 ORTHO05D003852 3.4e-10 70.1 57 56.1
MD14G1155200 Malus domestica HOM05D003325 ORTHO05D003852 4.5e-10 69.7 125 36.0
QL03p041468 Quercus lobata HOM05D003325 ORTHO05D003852 4.5e-10 69.7 56 58.9
Atru.chr6.1822 Acer truncatum HOM05D003325 ORTHO05D003852 5.9e-10 69.3 64 51.6
Cc01_g02380 Coffea canephora HOM05D003325 ORTHO05D003852 5.9e-10 69.3 71 46.5
Duzib084G0716 Durio zibethinus HOM05D003325 ORTHO05D003852 5.9e-10 69.3 69 53.6
FAN13G2783 Fragaria x ananassa HOM05D003325 ORTHO05D003852 5.9e-10 69.3 62 53.2
HanXRQChr10g0317761 Helianthus annuus HOM05D003325 ORTHO05D003852 5.9e-10 69.3 64 48.4
Lj1g0016208 Lotus japonicus HOM05D003325 ORTHO05D003852 5.9e-10 69.3 56 62.5
MD06G1139200 Malus domestica HOM05D003325 ORTHO05D003852 5.9e-10 69.3 56 57.1
MD06G1139500 Malus domestica HOM05D003325 ORTHO05D003852 5.9e-10 69.3 56 57.1
Rhsim08G0191500 Rhododendron simsii HOM05D003325 ORTHO05D003852 5.9e-10 69.3 65 50.8
vmacro19124 Vaccinium macrocarpon HOM05D003325 ORTHO05D003852 5.9e-10 69.3 64 50.0
FAN08G2527 Fragaria x ananassa HOM05D003325 ORTHO05D003852 7.6e-10 68.9 62 53.2
SalBow5G0035 Salvia bowleyana HOM05D003325 ORTHO05D003852 7.6e-10 68.9 79 45.6
Duzib205G1086 Durio zibethinus HOM05D003325 ORTHO05D003852 1.3e-09 68.2 55 58.2
Aa31LG1G18420 Aethionema arabicum HOM05D003325 ORTHO05D003852 1.7e-09 67.8 88 42.0
arahy.Tifrunner.gnm1.ann1.A3FYYB Arachis hypogaea HOM05D016848 ORTHO05D014290 1.7e-09 67.8 49 87.8
Hma1.2p1_0014F.1_g009260 Hydrangea macrophylla HOM05D003325 ORTHO05D003852 1.7e-09 67.8 103 42.7
Lj5A94T49 Lonicera japonica HOM05D003325 ORTHO05D003852 1.7e-09 67.8 55 58.2
Prupe.5G149200 Prunus persica HOM05D003325 ORTHO05D003852 1.7e-09 67.8 50 62.0
Sabra12G0073800 Salix brachista HOM05D003325 ORTHO05D003852 1.7e-09 67.8 52 59.6
A02p42850 Brassica napus HOM05D003325 ORTHO05D003852 2.2e-09 67.4 76 50.0
BraA02t09207Z Brassica rapa HOM05D003325 ORTHO05D003852 2.2e-09 67.4 76 50.0
CSS0012678 Camellia sinensis var. sinensis HOM05D003325 ORTHO05D003852 2.2e-09 67.4 55 58.2
ClCG03G003870 Citrullus lanatus HOM05D003325 ORTHO05D003852 2.2e-09 67.4 68 50.0
Ciclev10033680m.g Citrus clementina HOM05D003325 ORTHO05D003852 2.2e-09 67.4 65 50.8
Oeu061142.1 Olea europaea HOM05D003325 ORTHO05D003852 2.2e-09 67.4 54 57.4
SGA_v2.0_scaffold383G50423 Striga asiatica HOM05D003325 ORTHO05D003852 2.2e-09 67.4 58 53.4
AL3G40400 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 2.9e-09 67.0 55 60.0
AL8G40600 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 2.9e-09 67.0 50 64.0
Eucgr.F00440 Eucalyptus grandis HOM05D003325 ORTHO05D003852 2.9e-09 67.0 63 54.0
HanXRQChr00c0029g0571191 Helianthus annuus HOM05D003325 ORTHO05D003852 2.9e-09 67.0 55 52.7
HanXRQChr13g0407901 Helianthus annuus HOM05D003325 ORTHO05D003852 2.9e-09 67.0 102 39.2
Cfa018776 Carpinus fangiana HOM05D003325 ORTHO05D003852 3.8e-09 66.6 53 62.3
Haze_07162 Corylus avellana HOM05D003325 ORTHO05D003852 3.8e-09 66.6 53 62.3
Sc10g0010530 Simmondsia chinensis HOM05D003325 ORTHO05D003852 3.8e-09 66.6 63 49.2
Carub.0008s2425 Capsella rubella HOM05D003325 ORTHO05D003852 5.0e-09 66.2 51 60.8
Duzib068G1443 Durio zibethinus HOM05D003325 ORTHO05D003852 5.0e-09 66.2 55 58.2
Lsat_1_v5_gn_1_33020 Lactuca sativa HOM05D003325 ORTHO05D003852 5.0e-09 66.2 61 50.8
Sc10g0010520 Simmondsia chinensis HOM05D003325 ORTHO05D003852 5.0e-09 66.2 60 51.7
arahy.Tifrunner.gnm1.ann1.J3UYEB Arachis hypogaea HOM05D003325 ORTHO05D003852 6.5e-09 65.9 40 75.0
CARHR277380 Cardamine hirsuta HOM05D003325 ORTHO05D003852 6.5e-09 65.9 53 60.4
Potri.004G005700 Populus trichocarpa HOM05D003325 ORTHO05D003852 6.5e-09 65.9 52 59.6
arahy.Tifrunner.gnm1.ann1.54H2MY Arachis hypogaea HOM05D001155 ORTHO05D015979 8.5e-09 65.5 134 41.0
arahy.Tifrunner.gnm1.ann1.9TNK9X Arachis hypogaea HOM05D000879 ORTHO05D013762 8.5e-09 65.5 48 87.5
BolC2t12350H Brassica oleracea HOM05D003325 ORTHO05D003852 8.5e-09 65.5 76 48.7
CiPaw.11G005500 Carya illinoinensis HOM05D003325 ORTHO05D003852 8.5e-09 65.5 54 63.0
COL.COLO4_07119 Corchorus olitorius HOM05D003325 ORTHO05D003852 8.5e-09 65.5 54 55.6
Migut.N02143 Erythranthe guttata HOM05D003325 ORTHO05D003852 8.5e-09 65.5 58 48.3
Migut.N02169 Erythranthe guttata HOM05D003325 ORTHO05D003852 8.5e-09 65.5 58 50.0
Potri.011G010100 Populus trichocarpa HOM05D003325 ORTHO05D003852 8.5e-09 65.5 56 53.6
arahy.Tifrunner.gnm1.ann1.X3WNCL Arachis hypogaea HOM05D002501 ORTHO05D002952 1.1e-08 65.1 79 50.6
BcaC03g18211 Brassica carinata HOM05D003325 ORTHO05D003852 1.1e-08 65.1 85 43.5
C02p62780 Brassica napus HOM05D003325 ORTHO05D003852 1.1e-08 65.1 85 43.5
Potri.011G010200 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.1e-08 65.1 56 51.8
AT5G63520 Arabidopsis thaliana HOM05D003325 ORTHO05D003852 1.4e-08 64.7 50 62.0
HanXRQChr13g0407821 Helianthus annuus HOM05D003325 ORTHO05D003852 1.4e-08 64.7 54 55.6
HanXRQChr13g0407851 Helianthus annuus HOM05D003325 ORTHO05D003852 1.4e-08 64.7 61 49.2
HanXRQChr13g0407891 Helianthus annuus HOM05D003325 ORTHO05D003852 1.4e-08 64.7 55 52.7
HanXRQChr13g0408761 Helianthus annuus HOM05D003325 ORTHO05D003852 1.4e-08 64.7 57 52.6
Manes.06G120900 Manihot esculenta HOM05D003325 ORTHO05D003852 1.4e-08 64.7 54 53.7
Oeu061143.2 Olea europaea HOM05D003325 ORTHO05D003852 1.4e-08 64.7 56 57.1
Sp2g26610 Schrenkiella parvula HOM05D003325 ORTHO05D003852 1.4e-08 64.7 50 62.0
Thhalv10004048m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 1.9e-08 64.3 50 60.0
Cpa.g.sc4.169 Carica papaya HOM05D003325 ORTHO05D003852 2.5e-08 63.9 56 57.1
Lalb_Chr08g0237261 Lupinus albus HOM05D003325 ORTHO05D003852 2.5e-08 63.9 70 50.0
EL10Ac5g11389 Beta vulgaris HOM05D003325 ORTHO05D003852 4.2e-08 63.2 51 56.9
QL03p041488 Quercus lobata HOM05D003325 ORTHO05D003852 4.2e-08 63.2 68 51.5
arahy.Tifrunner.gnm1.ann1.28A3T7 Arachis hypogaea HOM05D016848 ORTHO05D013762 5.5e-08 62.8 48 85.4
arahy.Tifrunner.gnm1.ann1.J64BKK Arachis hypogaea HOM05D000915 ORTHO05D084760 5.5e-08 62.8 108 35.2
arahy.Tifrunner.gnm1.ann1.N9MPK0 Arachis hypogaea HOM05D002501 ORTHO05D002952 5.5e-08 62.8 79 49.4
HanXRQChr02g0034321 Helianthus annuus HOM05D003325 ORTHO05D003852 5.5e-08 62.8 61 45.9
HanXRQChr13g0408781 Helianthus annuus HOM05D003325 ORTHO05D003852 5.5e-08 62.8 63 47.6
HanXRQChr13g0408811 Helianthus annuus HOM05D003325 ORTHO05D003852 5.5e-08 62.8 57 54.4
Manes.06G120800 Manihot esculenta HOM05D003325 ORTHO05D003852 5.5e-08 62.8 56 53.6
Hund10145 Selenicereus undatus HOM05D003325 ORTHO05D003852 5.5e-08 62.8 56 51.8
BcaB07g29692 Brassica carinata HOM05D003325 ORTHO05D003852 7.2e-08 62.4 85 42.4
DCAR_016380 Daucus carota HOM05D003325 ORTHO05D003852 7.2e-08 62.4 55 52.7
ECA247G1358 Erigeron canadensis HOM05D003325 ORTHO05D003852 9.3e-08 62.0 57 49.1
Gohir.A03G053200 Gossypium hirsutum HOM05D003325 ORTHO05D003852 1.2e-07 61.6 52 55.8
CANSAT80G0326 Cannabis sativa HOM05D003325 ORTHO05D003852 1.6e-07 61.2 50 58.0
CANSAT80G2651 Cannabis sativa HOM05D003325 ORTHO05D003852 1.6e-07 61.2 50 58.0
Ciclev10031319m.g Citrus clementina HOM05D003325 ORTHO05D003852 1.6e-07 61.2 64 48.4
DCAR_021631 Daucus carota HOM05D003325 ORTHO05D003852 2.1e-07 60.8 60 46.7
MD14G1155100 Malus domestica HOM05D003325 ORTHO05D003852 2.1e-07 60.8 80 41.2
Potri.012G100600 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.1e-07 60.8 54 50.0
FAN13G1110 Fragaria x ananassa HOM05D003325 ORTHO05D003852 2.7e-07 60.5 67 50.7
arahy.Tifrunner.gnm1.ann1.57G84F Arachis hypogaea HOM05D002501 ORTHO05D002952 3.6e-07 60.1 77 50.6
HanXRQChr04g0099651 Helianthus annuus HOM05D003325 ORTHO05D003852 3.6e-07 60.1 55 54.5
Potri.015G098800 Populus trichocarpa HOM05D003325 ORTHO05D003852 3.6e-07 60.1 54 50.0
VMungo0251G0588 Vigna mungo HOM05D003461 ORTHO05D005835 4.6e-07 59.7 57 56.1
AUR62029583 Chenopodium quinoa HOM05D003325 ORTHO05D003852 6.1e-07 59.3 83 38.6
FAN04G2439 Fragaria x ananassa HOM05D003325 ORTHO05D003852 6.1e-07 59.3 60 50.0
TAR622G0196 Trochodendron aralioides HOM05D003325 ORTHO05D003852 6.1e-07 59.3 66 42.4
Eucgr.B00095 Eucalyptus grandis HOM05D003325 ORTHO05D003852 7.9e-07 58.9 54 51.9
Sabra12G0073900 Salix brachista HOM05D003325 ORTHO05D003852 7.9e-07 58.9 54 48.1
TWI39G0380 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 7.9e-07 58.9 59 47.5
Gohir.D03G113900 Gossypium hirsutum HOM05D003325 ORTHO05D003852 1.0e-06 58.5 64 48.4
Gorai.003G120100 Gossypium raimondii HOM05D003325 ORTHO05D003852 1.0e-06 58.5 52 53.8
PGR083G0510 Punica granatum HOM05D003325 ORTHO05D003852 1.0e-06 58.5 89 43.8
GSVIVG01008557001 Vitis vinifera HOM05D003325 ORTHO05D003852 1.0e-06 58.5 58 48.3
arahy.Tifrunner.gnm1.ann1.8Z5VZA Arachis hypogaea HOM05D001596 ORTHO05D011602 1.8e-06 57.8 39 74.4
DCAR_021633 Daucus carota HOM05D003325 ORTHO05D003852 1.8e-06 57.8 67 46.3
arahy.Tifrunner.gnm1.ann1.16A6WD Arachis hypogaea HOM05D002501 ORTHO05D002952 2.3e-06 57.4 84 44.0
arahy.Tifrunner.gnm1.ann1.31N1MT Arachis hypogaea HOM05D002501 ORTHO05D002952 2.3e-06 57.4 84 44.0
arahy.Tifrunner.gnm1.ann1.K724YU Arachis hypogaea HOM05D002501 ORTHO05D002952 2.3e-06 57.4 92 44.6
Lsat_1_v5_gn_8_2441 Lactuca sativa HOM05D002501 ORTHO05D002952 2.3e-06 57.4 99 39.4
Solyc04g016160.4 Solanum lycopersicum HOM05D003325 ORTHO05D003852 2.3e-06 57.4 102 35.3
Solyc10g080020.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 2.3e-06 57.4 102 36.3
Sopen04g008210 Solanum pennellii HOM05D003325 ORTHO05D003852 2.3e-06 57.4 102 35.3
Sopen10g030630 Solanum pennellii HOM05D003325 ORTHO05D003852 2.3e-06 57.4 102 36.3
PGSC0003DMG400027287 Solanum tuberosum HOM05D003325 ORTHO05D003852 2.3e-06 57.4 102 35.3
PGSC0003DMG400038085 Solanum tuberosum HOM05D003325 ORTHO05D003852 2.3e-06 57.4 102 36.3
FvH4_5g08570 Fragaria vesca HOM05D003325 ORTHO05D003852 3.0e-06 57.0 52 51.9
HanXRQChr02g0034341 Helianthus annuus HOM05D003325 ORTHO05D003852 3.0e-06 57.0 43 60.5
Ca_08008_v3 Cicer arietinum L. HOM05D002501 ORTHO05D002952 3.9e-06 56.6 37 70.3
FAN18G2108 Fragaria x ananassa HOM05D003325 ORTHO05D003852 3.9e-06 56.6 52 50.0
HanXRQChr08g0226181 Helianthus annuus HOM05D002501 ORTHO05D002952 3.9e-06 56.6 91 39.6
Lj1g0014123 Lotus japonicus HOM05D002501 ORTHO05D002952 5.1e-06 56.2 94 39.4
TAR622G0641 Trochodendron aralioides HOM05D003325 ORTHO05D003852 6.7e-06 55.8 56 46.4
PGSC0003DMG400023730 Solanum tuberosum HOM05D003325 ORTHO05D003852 8.7e-06 55.5 103 36.9


User provided reference genes

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