Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 0.0e+00 1212.2 582 100.0
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 0.0e+00 1088.6 574 91.6
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 7.5e-285 983.4 598 77.6
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 1.2e-277 959.5 586 77.3
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 1.2e-237 826.6 636 64.5
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 6.3e-183 644.8 580 52.8
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 8.0e-178 627.9 580 54.1
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 1.0e-177 627.5 362 82.3
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 6.7e-177 624.8 363 82.1
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 6.3e-175 618.2 354 81.1
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 1.9e-171 606.7 357 80.7
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 1.2e-170 604.0 361 79.5
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 7.0e-166 588.2 373 76.4
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 6.1e-162 575.1 352 77.6
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 1.8e-158 563.5 314 80.9
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 4.3e-155 552.4 331 78.2
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 6.8e-153 545.0 348 72.7
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 1.5e-152 543.9 314 79.0
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 9.8e-152 541.2 311 80.1
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 2.2e-151 540.0 317 77.6
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 2.2e-151 540.0 319 76.5
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 2.2e-151 540.0 316 77.2
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 2.9e-151 539.7 314 77.7
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 3.7e-151 539.3 316 77.2
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 4.9e-151 538.9 316 77.8
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 2.4e-150 536.6 316 76.9
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 1.2e-149 534.3 393 66.9
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 1.6e-149 533.9 325 76.0
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 2.0e-149 533.5 317 76.0
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 2.7e-149 533.1 325 74.8
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 3.5e-149 532.7 313 77.3
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 3.5e-149 532.7 317 76.0
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 7.8e-149 531.6 314 75.5
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 1.0e-148 531.2 360 70.6
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 2.3e-148 530.0 313 76.4
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 6.6e-148 528.5 316 76.6
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 6.6e-148 528.5 313 76.7
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.9e-147 526.9 322 75.5
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 3.3e-147 526.2 365 68.5
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 4.3e-147 525.8 313 76.7
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 4.3e-147 525.8 314 75.2
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 1.2e-146 524.2 311 76.2
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 1.2e-146 524.2 314 75.2
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 2.1e-146 523.5 312 78.2
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 2.1e-146 523.5 312 78.2
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 2.1e-146 523.5 315 74.9
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 2.8e-146 523.1 308 76.0
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 4.7e-146 522.3 315 74.6
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 6.2e-146 521.9 319 74.6
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 1.0e-145 521.2 322 73.9
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 1.4e-145 520.8 316 76.6
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 2.3e-145 520.0 314 74.8
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 3.1e-145 519.6 305 76.7
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 3.1e-145 519.6 313 75.7
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 4.0e-145 519.2 315 74.6
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 4.0e-145 519.2 315 74.6
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 4.0e-145 519.2 312 76.6
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 5.2e-145 518.8 316 75.9
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 5.2e-145 518.8 314 74.8
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 6.8e-145 518.5 316 74.7
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 8.9e-145 518.1 316 75.3
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 8.9e-145 518.1 388 62.6
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 8.9e-145 518.1 319 74.3
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 1.5e-144 517.3 311 74.6
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 2.0e-144 516.9 312 76.0
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 2.6e-144 516.5 316 74.4
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 9.8e-144 514.6 318 77.0
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 1.3e-143 514.2 308 76.3
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 1.3e-143 514.2 319 73.4
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 3.7e-143 512.7 317 74.4
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 6.4e-143 511.9 361 65.9
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 8.3e-143 511.5 305 75.7
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 2.4e-142 510.0 310 76.8
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 2.4e-142 510.0 314 72.9
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 3.2e-142 509.6 310 74.8
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 1.2e-141 507.7 344 70.6
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 2.0e-141 506.9 307 76.5
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 2.0e-141 506.9 310 75.2
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 2.7e-141 506.5 307 75.9
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 2.7e-141 506.5 347 68.3
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 2.7e-141 506.5 312 73.1
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 3.5e-141 506.1 311 74.3
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 3.5e-141 506.1 304 75.0
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 6.0e-141 505.4 307 76.9
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 2.3e-140 503.4 310 74.5
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 3.0e-140 503.1 307 76.2
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 6.6e-140 501.9 307 75.9
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 8.6e-140 501.5 321 69.8
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 8.6e-140 501.5 307 75.6
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 1.1e-139 501.1 307 76.2
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 1.5e-139 500.7 310 73.2
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 2.5e-139 500.0 306 74.8
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 5.6e-139 498.8 307 75.6
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 9.5e-139 498.0 307 75.9
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 5.8e-136 488.8 323 69.7
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 4.9e-135 485.7 308 72.1
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 7.1e-134 481.9 307 71.7
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 7.8e-133 478.4 310 71.3
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 5.2e-129 465.7 316 69.0
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 6.8e-129 465.3 305 70.5
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 1.3e-127 461.1 310 67.4
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 1.7e-127 460.7 305 70.2
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 5.1e-124 449.1 313 68.4
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 1.5e-123 447.6 314 68.8
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 1.5e-120 437.6 306 65.0
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 3.4e-120 436.4 311 63.3
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 4.4e-120 436.0 310 67.4
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 1.1e-118 431.4 305 68.2
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 7.1e-118 428.7 342 62.0
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 3.0e-116 423.3 305 65.6
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 1.9e-115 420.6 334 62.6
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 5.6e-115 419.1 395 55.7
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 4.8e-114 416.0 274 68.6
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 6.9e-113 412.1 284 66.2
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 2.6e-112 410.2 302 62.3
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 4.5e-112 409.5 444 49.1
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 2.2e-111 407.1 305 60.3
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 1.4e-110 404.4 241 75.5
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 9.9e-104 381.7 310 58.4
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 1.1e-94 351.7 212 75.5
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 9.0e-89 332.0 201 75.1
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 3.4e-88 330.1 199 74.9
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 2.9e-87 327.0 182 80.8
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 3.8e-87 326.6 212 71.2
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 4.2e-86 323.2 244 64.8
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 1.8e-81 307.8 176 77.8
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 6.9e-81 305.8 224 66.1
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 5.5e-78 296.2 302 48.0
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 1.8e-68 264.6 305 48.9
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 3.3e-46 190.7 208 45.7
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 4.4e-43 180.3 131 66.4
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 1.0e-39 169.1 87 83.9
MBI18_g46216_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 9.5e-38 162.5 99 74.7
arahy.Tifrunner.gnm1.ann1.6LUE8P Arachis hypogaea HOM05D005241 ORTHO05D005862 1.7e-31 141.7 84 86.9
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 5.0e-31 140.2 94 67.0
AagrBONN_evm.TU.Sc2ySwM_228.5641 Anthoceros agrestis HOM05D005241 ORTHO05D005862 1.4e-28 132.1 341 30.2
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 3.1e-28 131.0 78 73.1
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 6.8e-28 129.8 315 29.8
Sc08g0005370 Simmondsia chinensis HOM05D005241 ORTHO05D005862 3.7e-26 124.0 78 76.9
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 4.6e-24 117.1 68 75.0
MBI18_g29570_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.3e-23 115.5 88 61.4
Peaxi162Scf00014g00192 Petunia axillaris HOM05D005241 ORTHO05D005862 6.8e-20 103.2 93 62.4
CBR_g30152 Chara braunii HOM05D010403 ORTHO05D005862 4.3e-14 84.0 159 31.4
CBR_g30241 Chara braunii HOM05D005241 ORTHO05D005862 1.1e-12 79.3 323 25.1
MBI19_g36862_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 2.1e-08 65.1 49 57.1
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 2.1e-08 65.1 41 65.9
MBI18_g11928_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 4.6e-08 63.9 44 68.2
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 1.5e-06 58.9 43 67.4


User provided reference genes

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