Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 2.7e-62 241.9 126 100.0
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 4.1e-55 218.0 114 98.2
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 4.1e-55 218.0 114 98.2
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 2.7e-54 215.3 114 97.4
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 2.6e-49 198.7 114 89.5
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 7.5e-49 197.2 114 88.6
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 7.5e-49 197.2 114 88.6
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 2.2e-48 195.7 114 88.6
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 3.7e-48 194.9 114 86.0
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 5.4e-47 191.0 113 86.7
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 1.2e-46 189.9 114 85.1
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 1.6e-46 189.5 115 86.1
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.3e-45 185.7 114 83.3
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 2.3e-45 185.7 114 83.3
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 2.3e-45 185.7 114 83.3
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 6.6e-45 184.1 114 86.0
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 8.6e-45 183.7 116 83.6
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 1.1e-44 183.3 114 83.3
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 2.5e-44 182.2 114 81.6
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 2.5e-44 182.2 114 79.8
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.5e-44 182.2 114 82.5
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 4.3e-44 181.4 114 81.6
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 9.5e-44 180.3 114 81.6
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 1.6e-43 179.5 115 81.7
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 2.1e-43 179.1 114 84.2
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.1e-43 179.1 115 81.7
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.1e-43 179.1 115 81.7
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 2.1e-43 179.1 115 81.7
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.8e-43 178.7 114 80.7
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 2.8e-43 178.7 114 81.6
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 3.6e-43 178.3 114 79.8
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 3.6e-43 178.3 114 81.6
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 4.7e-43 177.9 112 83.0
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 6.2e-43 177.6 115 80.9
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 8.1e-43 177.2 116 80.2
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 8.1e-43 177.2 114 79.8
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 1.1e-42 176.8 113 82.3
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.4e-42 176.4 114 83.3
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 1.4e-42 176.4 114 83.3
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.8e-42 176.0 114 79.8
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 3.1e-42 175.3 114 78.9
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 3.1e-42 175.3 115 80.0
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 5.2e-42 174.5 116 77.6
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 6.8e-42 174.1 115 80.0
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 6.8e-42 174.1 115 80.0
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 8.9e-42 173.7 115 80.0
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 8.9e-42 173.7 115 79.1
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 1.2e-41 173.3 116 79.3
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 1.5e-41 172.9 115 79.1
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.5e-41 172.9 113 78.8
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 2.0e-41 172.6 115 79.1
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 2.6e-41 172.2 113 77.0
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 3.4e-41 171.8 114 81.6
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 4.4e-41 171.4 117 76.9
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 5.8e-41 171.0 114 78.1
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 9.8e-41 170.2 116 78.4
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 1.3e-40 169.9 114 75.4
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.7e-40 169.5 113 77.0
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 1.7e-40 169.5 118 77.1
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 1.7e-40 169.5 115 76.5
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 2.2e-40 169.1 116 77.6
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 2.2e-40 169.1 117 76.9
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 2.2e-40 169.1 116 75.9
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 2.9e-40 168.7 119 74.8
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 6.4e-40 167.5 117 76.9
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.4e-39 166.4 120 73.3
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.4e-39 166.4 114 74.6
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 1.9e-39 166.0 120 75.8
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 1.9e-39 166.0 113 74.3
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.9e-39 166.0 116 76.7
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 2.4e-39 165.6 116 75.0
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 2.4e-39 165.6 113 76.1
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 2.4e-39 165.6 116 76.7
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 4.1e-39 164.9 120 75.0
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 5.4e-39 164.5 116 75.0
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 7.1e-39 164.1 116 75.9
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 7.1e-39 164.1 120 72.5
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 1.6e-38 162.9 116 75.0
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.7e-38 162.2 113 72.6
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 2.7e-38 162.2 116 75.0
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 6.0e-38 161.0 116 74.1
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 7.8e-38 160.6 116 75.9
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 7.8e-38 160.6 114 75.4
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 7.8e-38 160.6 114 75.4
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 7.8e-38 160.6 114 74.6
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 1.3e-37 159.8 104 76.9
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 3.9e-37 158.3 124 70.2
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 6.6e-37 157.5 123 69.1
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 6.6e-37 157.5 113 72.6
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 8.6e-37 157.1 117 73.5
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 1.1e-36 156.8 112 74.1
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 1.9e-36 156.0 113 73.5
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 1.9e-36 156.0 122 69.7
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 4.3e-36 154.8 116 71.6
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 5.6e-36 154.5 140 64.3
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 9.5e-36 153.7 123 69.9
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 9.5e-36 153.7 136 64.7
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 2.8e-35 152.1 115 72.2
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 2.8e-35 152.1 127 68.5
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 2.8e-35 152.1 127 68.5
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 3.6e-35 151.8 116 69.8
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 4.7e-35 151.4 146 59.6
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 8.1e-35 150.6 125 68.8
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 2.3e-34 149.1 114 71.1
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 4.0e-34 148.3 112 73.2
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 5.2e-34 147.9 128 64.1
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 6.8e-34 147.5 154 56.5
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 6.8e-34 147.5 114 70.2
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 8.9e-34 147.1 128 65.6
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 1.5e-33 146.4 114 71.1
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 2.0e-33 146.0 131 64.1
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 2.0e-33 146.0 131 64.1
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 3.4e-33 145.2 113 66.4
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 7.6e-33 144.1 115 70.4
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 7.6e-33 144.1 114 68.4
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 1.3e-32 143.3 131 62.6
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 9.2e-31 137.1 85 83.5
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 1.2e-30 136.7 114 58.8
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 3.5e-30 135.2 114 69.3
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 4.6e-30 134.8 109 70.6
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 4.6e-30 134.8 114 66.7
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 4.6e-30 134.8 85 82.4
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 2.3e-29 132.5 97 73.2
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 2.3e-29 132.5 143 51.7
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 3.3e-28 128.6 115 60.9
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 4.7e-27 124.8 113 59.3
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 8.9e-26 120.6 114 65.8
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.5e-25 119.8 99 65.7
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 2.6e-25 119.0 111 64.0
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 3.4e-25 118.6 122 59.0
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 4.9e-24 114.8 133 54.1
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 1.4e-23 113.2 148 49.3
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 2.1e-22 109.4 113 53.1
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 6.6e-21 104.4 96 60.4
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.8e-19 99.0 69 72.5
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 1.5e-17 93.2 87 59.8
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.3e-16 90.1 55 85.5
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.7e-16 89.7 58 79.3
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.2e-16 89.4 54 87.0
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.4e-15 86.7 53 84.9
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.4e-15 86.7 54 83.3
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.9e-15 86.3 56 78.6
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 1.9e-15 86.3 77 61.0
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 9.3e-15 84.0 54 79.6
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 6.0e-14 81.3 79 57.0
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 1.7e-13 79.7 47 85.1
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 8.7e-13 77.4 45 84.4
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 1.3e-11 73.6 114 43.9
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 1.3e-11 73.6 72 56.9
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 1.3e-11 73.6 72 56.9
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 1.3e-11 73.6 120 40.0
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 4.5e-09 65.1 74 52.7
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 3.8e-08 62.0 43 72.1
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 4.9e-08 61.6 104 43.3
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 4.9e-08 61.6 51 56.9
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 4.9e-08 61.6 49 59.2
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 4.9e-08 61.6 104 43.3
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 8.4e-08 60.8 51 56.9
BcaB02g10679 Brassica carinata HOM05D004301 ORTHO05D005124 1.6e-06 56.6 44 63.6
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 2.1e-06 56.2 44 68.2


User provided reference genes

Program Settings