Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RTX0DF Arachis hypogaea HOM05D007805 ORTHO05D009877 4.4e-27 124.0 68 100.0
arahy.Tifrunner.gnm1.ann1.XU3UV1 Arachis hypogaea HOM05D007805 ORTHO05D009877 4.4e-27 124.0 68 100.0
Lj3g0006859 Lotus japonicus HOM05D007805 ORTHO05D009877 1.5e-19 99.0 64 81.2
Glyma.11G096300 Glycine max HOM05D007805 ORTHO05D009877 4.4e-19 97.4 64 76.6
Glyma.12G022400 Glycine max HOM05D007805 ORTHO05D009877 1.3e-18 95.9 64 75.0
Medtr4g076090 Medicago truncatula HOM05D007805 ORTHO05D009877 8.3e-18 93.2 64 76.6
Phvul.011G024400 Phaseolus vulgaris HOM05D007805 ORTHO05D009877 1.4e-17 92.4 64 75.0
CSS0028935 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 7.0e-17 90.1 68 80.9
TPR.G21248 Trifolium pratense HOM05D007805 ORTHO05D009877 7.0e-17 90.1 65 80.0
CSS0006336 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 9.1e-17 89.7 68 79.4
Dinv24693 Davidia involucrata HOM05D007805 ORTHO05D009877 9.1e-17 89.7 65 75.4
Atru.chr8.992 Acer truncatum HOM05D007805 ORTHO05D009877 2.0e-16 88.6 64 75.0
COL.COLO4_33759 Corchorus olitorius HOM05D007805 ORTHO05D009877 5.9e-16 87.0 63 74.6
MBI02_g35828_MAGBIO Magnolia biondii HOM05D007805 ORTHO05D009877 5.9e-16 87.0 61 77.0
Prupe.3G186600 Prunus persica HOM05D007805 ORTHO05D009877 5.9e-16 87.0 63 73.0
CSS0012461 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 2.2e-15 85.1 68 77.9
FvH4_6g39540 Fragaria vesca HOM05D007805 ORTHO05D009877 5.0e-15 84.0 63 68.3
FAN02G2902 Fragaria x ananassa HOM05D007805 ORTHO05D009877 5.0e-15 84.0 63 68.3
FAN09G3597 Fragaria x ananassa HOM05D007805 ORTHO05D009877 5.0e-15 84.0 63 68.3
FAN14G4838 Fragaria x ananassa HOM05D007805 ORTHO05D009877 5.0e-15 84.0 63 68.3
RcHm_v2.0_Chr2g0153601 Rosa chinensis HOM05D007805 ORTHO05D009877 5.0e-15 84.0 63 68.3
TWI34G1833 Tripterygium wilfordii HOM05D007805 ORTHO05D009877 5.0e-15 84.0 64 70.3
CANSAT64G2225 Cannabis sativa HOM05D007805 ORTHO05D009877 6.5e-15 83.6 62 66.1
CDE02G0479 Ceratophyllum demersum HOM05D000623 ORTHO05D005779 6.5e-15 83.6 65 69.2
ClCG07G010920 Citrullus lanatus HOM05D007805 ORTHO05D009877 6.5e-15 83.6 63 68.3
Duzib133G0571 Durio zibethinus HOM05D007805 ORTHO05D009877 6.5e-15 83.6 63 69.8
Sed0026541 Sechium edule HOM05D007805 ORTHO05D009877 1.9e-14 82.0 63 69.8
GSVIVG01015820001 Vitis vinifera HOM05D007805 ORTHO05D009877 1.9e-14 82.0 64 67.2
MELO3C016236.2 Cucumis melo HOM05D007805 ORTHO05D009877 2.5e-14 81.6 63 65.1
Duzib138G1109 Durio zibethinus HOM05D007805 ORTHO05D009877 2.5e-14 81.6 63 69.8
CsaV3_4G007340 Cucumis sativus L. HOM05D007805 ORTHO05D009877 4.2e-14 80.9 63 65.1
MD09G1139100 Malus domestica HOM05D007805 ORTHO05D009877 7.2e-14 80.1 64 70.3
QL04p061619 Quercus lobata HOM05D007805 ORTHO05D009877 7.2e-14 80.1 63 69.8
Rhsim12G0014500 Rhododendron simsii HOM05D007805 ORTHO05D009877 7.2e-14 80.1 66 72.7
Ciclev10013268m.g Citrus clementina HOM05D007805 ORTHO05D009877 9.4e-14 79.7 66 71.2
PGR142G2087 Punica granatum HOM05D007805 ORTHO05D009877 9.4e-14 79.7 64 67.2
THA.LOC104808521 Tarenaya hassleriana HOM05D007805 ORTHO05D009877 9.4e-14 79.7 60 68.3
Thecc.01G172700 Theobroma cacao HOM05D007805 ORTHO05D009877 9.4e-14 79.7 63 66.7
Cc05_g00040 Coffea canephora HOM05D007805 ORTHO05D009877 1.2e-13 79.3 65 67.7
CiPaw.03G113200 Carya illinoinensis HOM05D007805 ORTHO05D009877 1.6e-13 79.0 63 69.8
Oeu003099.1 Olea europaea HOM05D007805 ORTHO05D009877 1.6e-13 79.0 64 68.8
Potri.006G021100 Populus trichocarpa HOM05D007805 ORTHO05D009877 3.6e-13 77.8 64 65.6
Gohir.D11G163200 Gossypium hirsutum HOM05D007805 ORTHO05D009877 6.1e-13 77.0 63 68.3
Gorai.007G173900 Gossypium raimondii HOM05D007805 ORTHO05D009877 6.1e-13 77.0 63 68.3
TAR624G1043 Trochodendron aralioides HOM05D007805 ORTHO05D009877 8.0e-13 76.6 61 67.2
Gohir.A11G156100 Gossypium hirsutum HOM05D007805 ORTHO05D009877 1.0e-12 76.3 63 66.7
Manes.08G069000 Manihot esculenta HOM05D007805 ORTHO05D009877 1.0e-12 76.3 64 65.6
Cpa.g.sc8.292 Carica papaya HOM05D007805 ORTHO05D009877 1.4e-12 75.9 64 62.5
CARHR098100 Cardamine hirsuta HOM05D007805 ORTHO05D009877 1.8e-12 75.5 59 67.8
MSTRG.6601 Avicennia marina HOM05D007805 ORTHO05D009877 3.0e-12 74.7 65 64.6
Cfa023524 Carpinus fangiana HOM05D007805 ORTHO05D009877 3.0e-12 74.7 63 69.8
Nitab4.5_0002015g0030 Nicotiana tabacum HOM05D007805 ORTHO05D009877 5.2e-12 73.9 61 72.1
Psat7g179400 Pisum sativum HOM05D007805 ORTHO05D009877 5.2e-12 73.9 68 64.7
Sabra06G0014500 Salix brachista HOM05D007805 ORTHO05D009877 5.2e-12 73.9 64 62.5
SalBow7G2318 Salvia bowleyana HOM05D007805 ORTHO05D009877 6.8e-12 73.6 65 66.2
ECA233G5845 Erigeron canadensis HOM05D007805 ORTHO05D009877 2.0e-11 72.0 68 69.1
HanXRQChr13g0396951 Helianthus annuus HOM05D007805 ORTHO05D009877 2.0e-11 72.0 67 64.2
Carub.0003s2238 Capsella rubella HOM05D007805 ORTHO05D009877 2.6e-11 71.6 60 66.7
AUR62017845 Chenopodium quinoa HOM05D007805 ORTHO05D009877 2.6e-11 71.6 64 62.5
Peaxi162Scf00047g02325 Petunia axillaris HOM05D007805 ORTHO05D009877 2.6e-11 71.6 61 70.5
Migut.M00097 Erythranthe guttata HOM05D007805 ORTHO05D009877 3.4e-11 71.2 63 63.5
Haze_13640 Corylus avellana HOM05D007805 ORTHO05D009877 5.7e-11 70.5 63 66.7
PSO675G4353 Papaver somniferum HOM05D007805 ORTHO05D009877 5.7e-11 70.5 62 59.7
AL3G36420 Arabidopsis lyrata HOM05D007805 ORTHO05D009877 9.8e-11 69.7 59 67.8
PSO541G3237 Papaver somniferum HOM05D007805 ORTHO05D009877 9.8e-11 69.7 62 59.7
Lsat_1_v5_gn_6_41501 Lactuca sativa HOM05D007805 ORTHO05D009877 1.3e-10 69.3 67 67.2
AT3G22210 Arabidopsis thaliana HOM05D007805 ORTHO05D009877 2.2e-10 68.6 59 66.1
Aa31LG8G8770 Aethionema arabicum HOM05D000023 ORTHO05D000014 2.8e-10 68.2 60 63.3
Thhalv10021880m.g Eutrema salsugineum HOM05D007805 ORTHO05D009877 3.7e-10 67.8 60 63.3
BcaB06g26324 Brassica carinata HOM05D007805 ORTHO05D009877 4.8e-10 67.4 60 63.3
BcaC05g28092 Brassica carinata HOM05D007805 ORTHO05D009877 4.8e-10 67.4 60 63.3
A05p26590 Brassica napus HOM05D007805 ORTHO05D009877 4.8e-10 67.4 60 63.3
C05p41160 Brassica napus HOM05D007805 ORTHO05D009877 4.8e-10 67.4 60 63.3
BolC5t32859H Brassica oleracea HOM05D007805 ORTHO05D009877 4.8e-10 67.4 60 63.3
BraA05t21534Z Brassica rapa HOM05D007805 ORTHO05D009877 4.8e-10 67.4 60 63.3
Solyc12g006440.2 Solanum lycopersicum HOM05D007805 ORTHO05D009877 1.1e-09 66.2 60 61.7
Sopen12g002380 Solanum pennellii HOM05D007805 ORTHO05D009877 1.1e-09 66.2 60 61.7
PGSC0003DMG400024282 Solanum tuberosum HOM05D007805 ORTHO05D009877 1.1e-09 66.2 60 61.7
Sp3g20010 Schrenkiella parvula HOM05D007805 ORTHO05D009877 1.4e-09 65.9 60 61.7
Hund18262 Selenicereus undatus HOM05D007805 ORTHO05D009877 4.1e-09 64.3 38 86.8
EL10Ac6g15349 Beta vulgaris HOM05D007805 ORTHO05D009877 2.0e-08 62.0 41 78.0
Os04g0657900 Oryza sativa ssp. japonica HOM05D007805 ORTHO05D009877 6.6e-07 57.0 63 57.1
AagrBONN_evm.TU.Sc2ySwM_228.5835 Anthoceros agrestis HOM05D007805 ORTHO05D009877 1.1e-06 56.2 64 51.6
unitig_899.g15287 Utricularia gibba HOM05D007805 ORTHO05D009877 1.9e-06 55.5 60 51.7


User provided reference genes

Program Settings