Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 1.2e-164 583.2 306 100.0
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 1.2e-89 334.0 353 56.4
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 1.1e-88 330.9 353 56.1
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 2.9e-86 322.8 353 55.5
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 2.4e-85 319.7 353 55.0
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 7.1e-85 318.2 353 54.1
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 2.7e-84 316.2 353 54.4
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 1.7e-83 313.5 353 53.0
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 2.3e-83 313.2 353 53.3
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 2.3e-83 313.2 353 53.8
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 1.1e-82 310.8 353 52.7
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 3.3e-82 309.3 353 53.0
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 4.3e-82 308.9 353 53.3
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 5.6e-82 308.5 353 52.7
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 1.3e-81 307.4 353 52.7
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 4.5e-79 298.9 353 50.7
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 7.6e-79 298.1 353 50.1
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 7.6e-79 298.1 353 50.1
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 2.2e-78 296.6 352 49.7
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 2.9e-78 296.2 353 50.4
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 3.8e-78 295.8 352 49.7
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 6.4e-78 295.0 353 50.4
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 6.4e-78 295.0 352 50.3
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 1.1e-77 294.3 353 50.1
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 1.4e-77 293.9 353 50.7
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 3.2e-77 292.7 352 50.9
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 3.2e-77 292.7 352 49.4
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 3.2e-77 292.7 353 49.9
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 4.2e-77 292.4 353 49.9
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 9.3e-77 291.2 352 48.9
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 9.3e-77 291.2 353 49.0
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 1.6e-76 290.4 352 48.9
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 1.6e-76 290.4 353 49.6
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 2.1e-76 290.0 353 49.0
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 2.1e-76 290.0 353 49.3
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 2.7e-76 289.7 353 49.3
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 2.7e-76 289.7 352 48.9
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 2.7e-76 289.7 355 49.0
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 2.7e-76 289.7 352 48.6
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 2.7e-76 289.7 352 48.6
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 2.7e-76 289.7 352 48.6
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 3.5e-76 289.3 353 49.3
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 3.5e-76 289.3 352 48.3
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 6.0e-76 288.5 353 48.7
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 1.3e-75 287.3 352 48.3
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 1.3e-75 287.3 353 49.6
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 1.8e-75 287.0 353 48.7
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 2.3e-75 286.6 352 48.9
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 2.3e-75 286.6 356 48.3
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 2.3e-75 286.6 352 49.1
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 2.3e-75 286.6 353 49.0
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 3.0e-75 286.2 352 48.6
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 3.0e-75 286.2 353 48.7
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 3.9e-75 285.8 353 49.0
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 8.7e-75 284.6 367 48.5
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 8.7e-75 284.6 353 48.4
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 1.1e-74 284.3 353 48.2
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 1.5e-74 283.9 353 48.2
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 1.9e-74 283.5 352 49.4
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 2.5e-74 283.1 353 48.2
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 2.5e-74 283.1 352 49.7
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 3.3e-74 282.7 352 48.3
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 3.3e-74 282.7 353 49.0
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 3.3e-74 282.7 353 48.7
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 3.3e-74 282.7 353 48.4
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 4.3e-74 282.3 354 48.0
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 4.3e-74 282.3 353 47.6
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 4.3e-74 282.3 353 47.6
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 4.3e-74 282.3 353 47.6
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 5.6e-74 282.0 353 47.6
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 7.4e-74 281.6 352 48.9
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 7.4e-74 281.6 354 49.4
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 9.6e-74 281.2 353 47.3
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 1.3e-73 280.8 353 48.7
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 1.3e-73 280.8 352 47.7
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 1.3e-73 280.8 352 49.1
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 1.3e-73 280.8 354 49.4
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 1.6e-73 280.4 353 48.2
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 2.1e-73 280.0 353 48.4
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 2.8e-73 279.6 353 48.2
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 3.7e-73 279.3 392 45.2
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 8.1e-73 278.1 353 48.2
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 1.1e-72 277.7 353 47.9
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 3.1e-72 276.2 353 47.9
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 4.0e-72 275.8 353 46.2
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 5.3e-72 275.4 353 46.7
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 5.3e-72 275.4 353 47.3
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 6.9e-72 275.0 353 48.2
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 1.5e-71 273.9 353 47.3
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 1.5e-71 273.9 353 46.5
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 3.4e-71 272.7 353 47.3
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 3.4e-71 272.7 353 47.3
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 5.8e-71 271.9 353 47.3
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 1.0e-70 271.2 353 47.3
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 1.0e-70 271.2 353 47.0
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 1.3e-70 270.8 353 47.0
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 1.3e-70 270.8 353 47.3
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 1.7e-70 270.4 353 46.7
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 1.7e-70 270.4 353 46.5
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 2.9e-70 269.6 353 47.0
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 2.9e-70 269.6 353 46.7
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 2.9e-70 269.6 353 47.0
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 8.4e-70 268.1 395 43.8
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 3.2e-69 266.2 370 43.5
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 3.5e-68 262.7 340 48.5
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 4.6e-68 262.3 412 42.5
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 3.0e-67 259.6 351 46.4
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 3.9e-67 259.2 341 47.5
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 8.7e-67 258.1 341 46.6
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 1.6e-65 253.8 340 46.8
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 2.8e-65 253.1 353 45.3
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 1.4e-64 250.8 285 51.2
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 1.8e-64 250.4 353 43.6
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 1.2e-63 247.7 353 44.5
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 2.6e-63 246.5 353 44.2
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 3.4e-63 246.1 339 43.7
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 1.3e-62 244.2 353 42.8
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 3.8e-62 242.7 355 42.8
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 2.5e-61 240.0 355 42.8
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 3.2e-61 239.6 340 43.8
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 4.6e-60 235.7 354 42.1
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 8.7e-59 231.5 353 41.9
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 2.5e-58 229.9 187 65.2
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 2.2e-57 226.9 187 66.3
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 1.8e-56 223.8 348 42.8
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 2.4e-56 223.4 356 40.4
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 9.0e-56 221.5 276 48.9
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 2.5e-53 213.4 361 39.3
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 2.7e-52 209.9 354 39.0
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 8.2e-49 198.4 311 43.4
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 5.3e-48 195.7 222 55.0
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 9.1e-48 194.9 353 37.7
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 7.7e-47 191.8 355 36.6
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.7e-46 190.7 190 56.8
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.7e-46 190.7 184 55.4
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 2.9e-46 189.9 376 36.7
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 5.7e-42 175.6 349 36.4
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 5.5e-37 159.1 141 63.1
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.6e-36 156.4 147 57.8
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 5.2e-35 152.5 252 39.3
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 2.6e-34 150.2 368 33.7
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 7.0e-32 142.1 354 30.8
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 3.0e-27 126.7 418 27.8
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 5.2e-27 125.9 243 35.4
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 1.2e-26 124.8 296 32.4
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 4.2e-21 106.3 86 64.0
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 2.7e-20 103.6 212 34.4
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 3.7e-17 93.2 99 51.5
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 8.3e-17 92.0 236 31.4
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 1.8e-16 90.9 55 67.3
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 2.7e-15 87.0 55 67.3
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 4.5e-15 86.3 82 53.7
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.0e-11 75.1 189 32.3
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 5.2e-11 72.8 91 47.3
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 7.5e-10 68.9 43 69.8
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 8.3e-09 65.5 45 55.6
Atru.chr9.1960 Acer truncatum HOM05D003895 ORTHO05D004723 2.4e-08 63.9 45 71.1
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 7.8e-07 58.9 52 63.5
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 6.6e-06 55.8 46 67.4


User provided reference genes

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