Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 2.0e-164 582.4 306 100.0
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 1.2e-161 573.2 306 98.0
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 8.8e-136 487.3 308 86.4
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 3.3e-130 468.8 307 80.5
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 1.0e-128 463.8 299 84.6
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 4.0e-128 461.8 306 78.8
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 6.8e-128 461.1 306 78.8
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 1.6e-124 449.9 306 77.5
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 5.9e-124 448.0 306 77.5
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 1.4e-117 426.8 307 72.0
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 1.0e-115 420.6 306 74.2
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 5.0e-115 418.3 307 74.3
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 6.6e-115 417.9 306 74.2
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 8.0e-113 411.0 307 72.0
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 8.9e-112 407.5 300 73.0
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 8.9e-112 407.5 300 73.0
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 8.9e-112 407.5 306 72.9
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.0e-111 406.4 300 73.0
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 2.6e-111 406.0 293 70.3
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 4.4e-111 405.2 301 72.1
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 4.4e-111 405.2 300 70.3
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 5.8e-111 404.8 300 72.7
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 5.8e-111 404.8 300 72.7
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 9.8e-111 404.1 306 70.3
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 4.9e-110 401.7 295 70.5
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 2.4e-109 399.4 295 69.5
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 5.4e-109 398.3 304 69.4
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 5.4e-109 398.3 306 71.2
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 5.4e-109 398.3 296 69.6
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 7.8e-108 394.4 305 68.9
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 6.6e-107 391.3 295 68.5
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 1.1e-106 390.6 296 67.9
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 1.9e-106 389.8 292 68.8
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 4.3e-106 388.7 306 70.6
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 5.6e-106 388.3 295 65.8
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 5.6e-106 388.3 296 68.6
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 9.5e-106 387.5 300 66.7
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 2.1e-105 386.3 301 70.1
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 2.8e-105 386.0 296 68.2
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 2.8e-105 386.0 306 67.3
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 3.6e-105 385.6 293 68.9
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 8.1e-105 384.4 306 68.0
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 2.3e-104 382.9 306 68.0
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 3.1e-104 382.5 288 67.7
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 4.0e-104 382.1 305 68.2
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 5.2e-104 381.7 307 63.8
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 9.9e-103 377.5 307 69.7
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 2.9e-102 375.9 295 66.1
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 5.4e-101 371.7 306 66.3
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 2.7e-100 369.4 306 65.7
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 3.5e-100 369.0 306 66.7
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 3.5e-100 369.0 306 66.7
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 7.8e-100 367.9 288 66.0
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 1.3e-99 367.1 296 69.6
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 2.3e-99 366.3 282 66.7
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 1.1e-98 364.0 306 62.4
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 1.9e-98 363.2 282 65.6
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 1.9e-98 363.2 282 65.6
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 3.3e-98 362.5 307 62.2
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 4.3e-98 362.1 299 63.9
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 5.6e-98 361.7 301 62.1
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 1.4e-96 357.1 297 64.6
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 3.1e-96 355.9 306 63.4
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 4.0e-96 355.5 300 64.7
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 6.8e-96 354.8 302 67.9
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 3.4e-95 352.4 296 61.5
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 4.4e-95 352.1 301 65.1
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 9.9e-95 350.9 295 64.7
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 2.2e-94 349.7 306 62.7
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 6.4e-94 348.2 301 60.5
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 8.4e-94 347.8 276 63.8
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 1.4e-93 347.1 301 60.5
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 1.2e-92 344.0 300 55.7
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 1.2e-92 344.0 306 62.7
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 2.1e-92 343.2 300 62.3
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 2.1e-92 343.2 300 62.3
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 2.7e-92 342.8 250 69.6
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 1.3e-91 340.5 301 61.5
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 1.3e-91 340.5 299 61.5
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 2.3e-91 339.7 306 62.7
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 6.6e-91 338.2 222 76.1
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 8.7e-91 337.8 300 60.0
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 8.7e-91 337.8 239 74.1
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 8.7e-91 337.8 295 60.3
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 1.1e-90 337.4 320 56.6
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 2.5e-90 336.3 300 64.0
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 4.3e-90 335.5 300 62.7
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 4.3e-90 335.5 297 62.6
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 5.6e-90 335.1 300 64.0
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 1.2e-89 334.0 300 64.0
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 2.8e-89 332.8 300 64.0
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 3.6e-89 332.4 299 59.5
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 4.7e-89 332.0 298 61.7
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 1.4e-88 330.5 298 61.7
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 4.0e-88 328.9 298 61.7
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 1.5e-87 327.0 309 61.8
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 5.8e-87 325.1 297 60.3
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 9.9e-87 324.3 306 59.2
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 9.9e-87 324.3 285 61.1
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 1.7e-86 323.6 308 57.8
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 7.1e-85 318.2 358 53.1
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 1.6e-84 317.0 302 56.0
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 2.7e-84 316.2 319 60.2
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 3.5e-84 315.8 305 58.4
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 1.3e-83 313.9 293 54.6
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 3.9e-83 312.4 283 59.4
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 1.9e-82 310.1 283 60.4
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 3.3e-82 309.3 303 58.7
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 7.3e-82 308.1 307 58.3
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 1.3e-81 307.4 299 52.5
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 2.8e-81 306.2 269 66.2
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 8.1e-81 304.7 306 52.6
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 8.1e-81 304.7 258 62.0
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 8.1e-81 304.7 300 59.0
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 1.1e-80 304.3 299 52.8
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 7.1e-77 291.6 305 54.1
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 2.1e-76 290.0 186 80.1
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 6.0e-76 288.5 232 69.0
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 9.0e-72 274.6 221 60.2
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 3.4e-71 272.7 270 56.3
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 6.2e-65 251.9 301 51.2
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 4.5e-63 245.7 290 50.3
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 3.5e-60 236.1 293 47.4
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 1.3e-59 234.2 219 56.2
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 3.8e-54 216.1 188 55.9
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 7.4e-50 201.8 288 43.8
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 3.8e-46 189.5 206 51.9
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 4.7e-44 182.6 100 91.0
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 3.9e-43 179.5 302 39.7
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 9.7e-42 174.9 285 42.8
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 5.7e-34 149.1 124 62.1
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 1.5e-29 134.4 195 36.4
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 7.2e-29 132.1 137 52.6
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 7.2e-29 132.1 137 52.6
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 2.1e-28 130.6 68 86.8
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 3.4e-26 123.2 206 35.0
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 1.4e-24 117.9 193 35.2
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.0e-23 114.0 66 77.3
Oeu037598.1 Olea europaea HOM05D004932 ORTHO05D005622 3.6e-20 103.2 99 64.6
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 9.8e-18 95.1 64 71.9
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 4.9e-17 92.8 62 72.6
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 4.5e-15 86.3 67 61.2
unitig_26.g9167 Utricularia gibba HOM05D004932 ORTHO05D005622 8.6e-14 82.0 122 46.7
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 4.2e-13 79.7 119 45.4
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 1.2e-12 78.2 39 89.7
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 1.6e-12 77.8 43 79.1
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 3.6e-12 76.6 50 72.0
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 1.8e-11 74.3 45 68.9
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 2.3e-11 73.9 70 52.9
Medtr6g091840 Medicago truncatula HOM05D004932 ORTHO05D005622 4.0e-11 73.2 137 48.9
TAR636G2165 Trochodendron aralioides HOM05D004932 ORTHO05D005622 1.7e-09 67.8 55 56.4


User provided reference genes

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