Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 0.0e+00 1242.3 713 100.0
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 0.0e+00 1198.0 713 97.2
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 1.7e-193 680.2 718 64.1
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 4.8e-185 652.1 802 53.7
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 7.5e-178 628.2 727 59.1
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 9.8e-170 601.3 730 58.5
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 1.7e-169 600.5 789 56.4
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 2.9e-166 589.7 726 58.5
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 9.5e-165 584.7 793 53.3
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 4.7e-164 582.4 767 53.5
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 1.4e-163 580.9 777 49.8
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 1.5e-162 577.4 764 55.4
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 9.2e-160 568.2 874 44.9
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 9.2e-160 568.2 791 51.2
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 3.0e-158 563.1 763 52.8
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 3.9e-158 562.8 881 46.1
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 7.3e-157 558.5 783 51.0
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 2.1e-156 557.0 820 48.8
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 1.4e-155 554.3 760 53.0
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 3.1e-155 553.1 832 49.2
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 4.4e-154 549.3 824 48.4
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 4.6e-151 539.3 821 48.1
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 1.9e-149 533.9 790 52.0
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 5.6e-149 532.3 776 49.2
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 2.1e-148 530.4 771 48.8
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 8.1e-148 528.5 806 49.5
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 1.8e-147 527.3 769 49.3
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 3.4e-146 523.1 760 51.4
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 8.3e-145 518.5 764 47.4
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 1.1e-144 518.1 757 51.1
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 1.4e-136 491.1 810 48.0
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 3.2e-136 490.0 764 51.6
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 8.6e-134 481.9 740 48.1
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 1.5e-133 481.1 798 47.7
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 9.6e-133 478.4 797 47.7
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 3.6e-132 476.5 797 47.1
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 2.0e-130 470.7 971 42.2
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 2.6e-130 470.3 730 49.2
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 7.6e-130 468.8 818 42.4
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 9.9e-130 468.4 798 46.9
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 1.6e-127 461.1 770 44.8
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 1.1e-125 454.9 748 46.7
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 5.6e-125 452.6 729 48.8
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 9.6e-125 451.8 752 44.8
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 2.8e-124 450.3 706 46.9
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 5.3e-123 446.0 810 41.9
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 1.1e-117 428.3 718 44.6
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 1.9e-117 427.6 830 40.8
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 5.6e-117 426.0 812 43.5
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 1.6e-116 424.5 697 44.8
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 4.8e-116 422.9 700 44.6
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 8.1e-116 422.2 835 41.0
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 6.9e-115 419.1 806 44.2
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 2.0e-114 417.5 806 40.1
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 2.9e-113 413.7 737 40.7
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 4.9e-113 412.9 455 56.0
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 1.1e-112 411.8 889 38.0
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 1.2e-111 408.3 821 41.5
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 1.6e-111 407.9 814 40.5
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 2.1e-111 407.5 741 44.8
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 3.9e-110 403.3 470 53.0
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 3.9e-110 403.3 790 40.8
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 2.1e-108 397.5 821 41.3
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 3.1e-107 393.7 622 43.4
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 5.3e-107 392.9 686 46.9
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 2.2e-105 387.5 606 44.9
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 1.4e-104 384.8 770 40.6
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 1.4e-104 384.8 796 41.0
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 9.3e-104 382.1 715 42.4
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 1.2e-103 381.7 716 44.6
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 3.5e-103 380.2 712 43.3
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 7.9e-103 379.0 747 43.4
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 1.3e-102 378.3 731 43.1
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 7.4e-101 372.5 704 40.6
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 9.7e-101 372.1 709 43.0
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 8.2e-100 369.0 731 39.7
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 1.1e-99 368.6 713 44.3
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 3.1e-99 367.1 741 42.8
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 2.9e-97 360.5 692 42.2
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 2.9e-97 360.5 708 39.4
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 2.9e-97 360.5 745 40.5
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 3.0e-94 350.5 761 41.8
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 4.3e-93 346.7 698 42.8
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 3.7e-92 343.6 697 41.0
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 3.7e-92 343.6 700 40.7
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 3.1e-91 340.5 723 39.7
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 6.9e-91 339.3 719 42.0
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 1.1e-88 332.0 377 52.8
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 3.2e-88 330.5 403 49.4
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 8.8e-86 322.4 522 42.7
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 5.3e-83 313.2 721 41.2
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 1.5e-82 311.6 817 35.4
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 1.4e-80 305.1 820 34.1
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 1.3e-76 292.0 422 47.6
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 3.7e-76 290.4 574 41.1
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 1.8e-59 235.0 579 41.1
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 2.3e-54 218.0 362 40.1
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 2.3e-54 218.0 362 40.1
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 3.3e-48 197.6 526 40.3
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 1.3e-44 185.7 341 41.3
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 2.5e-40 171.4 844 27.3
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 2.0e-37 161.8 376 36.4
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 1.9e-35 155.2 137 63.5
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 7.0e-35 153.3 283 41.0
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 4.6e-26 124.0 150 52.0
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 3.0e-25 121.3 132 53.0
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 3.9e-25 120.9 190 43.2
TAR628G0206 Trochodendron aralioides HOM05D006481 ORTHO05D008160 3.1e-22 111.3 307 42.7
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 2.6e-21 108.2 199 36.2
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 2.1e-18 98.6 134 49.3
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 8.7e-17 93.2 141 45.4
RcHm_v2.0_Chr6g0252961 Rosa chinensis HOM05D006481 ORTHO05D008160 1.2e-15 89.4 102 49.0
Atru.chr5.2411 Acer truncatum HOM05D006481 ORTHO05D008160 1.6e-15 89.0 91 54.9
Hma1.2p1_0000F.1_g001000 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 5.2e-14 84.0 364 26.4
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 1.9e-11 75.5 105 45.7
SGA_v2.0_scaffold4001G54416 Striga asiatica HOM05D006481 ORTHO05D008160 1.3e-09 69.3 62 59.7
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 4.0e-06 57.8 47 59.6
Hma1.2p1_0883F.1_g232290 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 5.3e-06 57.4 59 57.6
RcHm_v2.0_Chr4g0423461 Rosa chinensis HOM05D006481 ORTHO05D000001 5.3e-06 57.4 115 32.2


User provided reference genes

Program Settings