Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RP8YTM Arachis hypogaea HOM05D001235 ORTHO05D005684 2.6e-95 352.1 180 100.0
arahy.Tifrunner.gnm1.ann1.I3JYC0 Arachis hypogaea HOM05D001235 ORTHO05D005684 2.9e-78 295.4 197 80.7
arahy.Tifrunner.gnm1.ann1.MZNG30 Arachis hypogaea HOM05D001235 ORTHO05D005684 2.9e-78 295.4 197 80.7
VMungo0720G0937 Vigna mungo HOM05D001235 ORTHO05D005684 2.4e-72 275.8 164 86.0
Glyma.10G298000 Glycine max HOM05D001235 ORTHO05D005684 1.3e-70 270.0 162 85.8
Lj5g0010068 Lotus japonicus HOM05D001235 ORTHO05D005684 1.9e-69 266.2 162 84.6
Ca_11427_v3 Cicer arietinum L. HOM05D001235 ORTHO05D005684 7.2e-69 264.2 159 85.5
Ca_29863_v3 Cicer arietinum L. HOM05D001235 ORTHO05D005684 7.2e-69 264.2 159 85.5
Medtr6g093240 Medicago truncatula HOM05D001235 ORTHO05D005684 1.8e-67 259.6 159 84.9
Medtr1g117000 Medicago truncatula HOM05D001235 ORTHO05D005684 3.0e-67 258.8 159 84.3
Phvul.007G001400 Phaseolus vulgaris HOM05D001235 ORTHO05D005684 5.1e-67 258.1 162 82.1
Psat6g244000 Pisum sativum HOM05D001235 ORTHO05D005684 1.4e-64 250.0 159 81.8
Lalb_Chr02g0144531 Lupinus albus HOM05D001235 ORTHO05D005684 1.3e-62 243.4 162 77.8
Thecc.04G188100 Theobroma cacao HOM05D001235 ORTHO05D005684 8.5e-62 240.7 162 75.9
COL.COLO4_08688 Corchorus olitorius HOM05D001235 ORTHO05D005684 1.9e-61 239.6 160 75.6
Dinv27164 Davidia involucrata HOM05D001235 ORTHO05D005684 7.2e-61 237.7 159 74.2
Duzib151G0601 Durio zibethinus HOM05D001235 ORTHO05D005684 4.6e-60 235.0 159 74.2
QL06p027955 Quercus lobata HOM05D001235 ORTHO05D005684 4.6e-60 235.0 159 74.8
Gorai.011G147600 Gossypium raimondii HOM05D001235 ORTHO05D005684 7.9e-60 234.2 159 74.2
Gohir.D10G133800 Gossypium hirsutum HOM05D001235 ORTHO05D005684 1.4e-59 233.4 159 73.6
Cfa008685 Carpinus fangiana HOM05D001235 ORTHO05D005684 1.8e-59 233.0 159 75.5
CiPaw.01G110000 Carya illinoinensis HOM05D001235 ORTHO05D005684 5.1e-59 231.5 157 73.9
Duzib212G0549 Durio zibethinus HOM05D001235 ORTHO05D005684 5.1e-59 231.5 159 74.8
MD04G1025900 Malus domestica HOM05D001235 ORTHO05D005684 6.7e-59 231.1 162 70.4
Haze_11704 Corylus avellana HOM05D001235 ORTHO05D005684 1.5e-58 229.9 159 74.8
Atru.chr3.1828 Acer truncatum HOM05D001235 ORTHO05D005684 7.4e-58 227.6 155 72.3
Dinv13678 Davidia involucrata HOM05D001235 ORTHO05D005684 1.7e-57 226.5 159 73.0
Prupe.1G175200 Prunus persica HOM05D001235 ORTHO05D005684 1.7e-57 226.5 155 72.9
RcHm_v2.0_Chr4g0411331 Rosa chinensis HOM05D001235 ORTHO05D005684 2.8e-57 225.7 159 71.7
CANSAT78G1591 Cannabis sativa HOM05D001235 ORTHO05D005684 3.7e-57 225.3 160 71.9
Manes.05G194300 Manihot esculenta HOM05D001235 ORTHO05D005684 4.8e-57 224.9 159 71.1
Hma1.2p1_0349F.1_g132360 Hydrangea macrophylla HOM05D001235 ORTHO05D005684 6.3e-57 224.6 160 70.0
FvH4_4g12510 Fragaria vesca HOM05D001235 ORTHO05D005684 1.1e-56 223.8 159 70.4
Ciclev10006658m.g Citrus clementina HOM05D001235 ORTHO05D005684 1.4e-56 223.4 152 75.0
TWI73G0237 Tripterygium wilfordii HOM05D001235 ORTHO05D005684 1.8e-56 223.0 155 73.5
PGR142G1880 Punica granatum HOM05D001235 ORTHO05D005684 2.4e-56 222.6 160 69.4
Potri.002G234500 Populus trichocarpa HOM05D001235 ORTHO05D005684 6.9e-56 221.1 159 72.3
FAN07G2568 Fragaria x ananassa HOM05D001235 ORTHO05D005684 9.1e-56 220.7 159 69.2
FAN22G1075 Fragaria x ananassa HOM05D001235 ORTHO05D005684 1.2e-55 220.3 156 70.5
FAN17G0427 Fragaria x ananassa HOM05D001235 ORTHO05D005684 2.0e-55 219.5 156 70.5
FAN12G0235 Fragaria x ananassa HOM05D001235 ORTHO05D005684 4.5e-55 218.4 159 68.6
Sabra14G0111700 Salix brachista HOM05D001235 ORTHO05D005684 5.9e-55 218.0 158 69.6
Potri.014G147900 Populus trichocarpa HOM05D001235 ORTHO05D005684 1.0e-54 217.2 158 70.9
Sabra02G0178900 Salix brachista HOM05D001235 ORTHO05D005684 1.3e-54 216.9 163 68.1
TAR362G0786 Trochodendron aralioides HOM05D001235 ORTHO05D005684 1.3e-54 216.9 157 68.2
CSS0039330 Camellia sinensis var. sinensis HOM05D001235 ORTHO05D005684 1.7e-54 216.5 157 68.8
Cpa.g.sc502.2 Carica papaya HOM05D001235 ORTHO05D005684 1.1e-53 213.8 159 67.9
Aqoxy5G00036 Aquilegia oxysepala HOM05D001235 ORTHO05D005684 1.9e-53 213.0 153 69.9
Peaxi162Scf00286g00547 Petunia axillaris HOM05D001235 ORTHO05D005684 3.2e-53 212.2 164 67.7
PSO357G0146 Papaver somniferum HOM05D001235 ORTHO05D005684 1.2e-52 210.3 159 65.4
Actinidia35919 Actinidia chinensis HOM05D001235 ORTHO05D005684 1.6e-52 209.9 154 68.2
PSO170G5672 Papaver somniferum HOM05D001235 ORTHO05D005684 6.1e-52 208.0 152 67.1
ECA248G1402 Erigeron canadensis HOM05D001235 ORTHO05D005684 1.0e-51 207.2 157 65.6
Nitab4.5_0012294g0010 Nicotiana tabacum HOM05D001235 ORTHO05D005684 1.4e-51 206.8 157 65.6
Eucgr.H00494 Eucalyptus grandis HOM05D001235 ORTHO05D005684 1.8e-51 206.5 159 64.8
TPR.G40801 Trifolium pratense HOM05D001235 ORTHO05D005684 1.8e-51 206.5 121 85.1
Hund19034 Selenicereus undatus HOM05D001235 ORTHO05D005684 8.8e-51 204.1 159 66.7
Nitab4.5_0001693g0060 Nicotiana tabacum HOM05D001235 ORTHO05D005684 1.1e-50 203.8 164 64.6
MSTRG.22434 Avicennia marina HOM05D001235 ORTHO05D005684 1.5e-50 203.4 166 62.7
Nn1g08260 Nelumbo nucifera HOM05D001235 ORTHO05D005684 1.5e-50 203.4 160 66.2
SalBow6G1240 Salvia bowleyana HOM05D001235 ORTHO05D005684 2.6e-50 202.6 156 66.7
Solyc09g098040.3 Solanum lycopersicum HOM05D001235 ORTHO05D005684 2.6e-50 202.6 151 68.2
Sopen09g035960 Solanum pennellii HOM05D001235 ORTHO05D005684 2.6e-50 202.6 151 68.2
EL10Ac3g07409 Beta vulgaris HOM05D001235 ORTHO05D005684 3.3e-50 202.2 155 67.1
Oeu001997.1 Olea europaea HOM05D001235 ORTHO05D005684 3.3e-50 202.2 155 66.5
Ah.04g149690 Amaranthus hybridus HOM05D001235 ORTHO05D005684 4.4e-50 201.8 155 67.1
Glyma.20G249000 Glycine max HOM05D001235 ORTHO05D005684 4.4e-50 201.8 121 84.3
HanXRQChr01g0021711 Helianthus annuus HOM05D001235 ORTHO05D005684 4.4e-50 201.8 157 64.3
Rhsim01G0114000 Rhododendron simsii HOM05D001235 ORTHO05D005684 5.7e-50 201.4 156 64.1
DCAR_027478 Daucus carota HOM05D001235 ORTHO05D005684 7.4e-50 201.1 156 62.8
Lsat_1_v5_gn_1_69940 Lactuca sativa HOM05D001235 ORTHO05D005684 7.4e-50 201.1 157 63.7
RcHm_v2.0_Chr4g0411251 Rosa chinensis HOM05D001235 ORTHO05D005684 7.4e-50 201.1 147 69.4
PGSC0003DMG400016613 Solanum tuberosum HOM05D001235 ORTHO05D005684 1.7e-49 199.9 151 68.2
Cc03_g10000 Coffea canephora HOM05D001235 ORTHO05D005684 2.8e-49 199.1 165 62.4
AUR62018504 Chenopodium quinoa HOM05D001235 ORTHO05D005684 3.7e-49 198.7 152 67.1
AL6G38320 Arabidopsis lyrata HOM05D001235 ORTHO05D005684 6.3e-49 198.0 157 62.4
CAN.G681.26 Capsicum annuum HOM05D001235 ORTHO05D005684 8.2e-49 197.6 165 64.2
THA.LOC104822294 Tarenaya hassleriana HOM05D001235 ORTHO05D005684 1.4e-48 196.8 163 59.5
CARHR187040 Cardamine hirsuta HOM05D001235 ORTHO05D005684 5.3e-48 194.9 157 61.1
Sc19g0007540 Simmondsia chinensis HOM05D001235 ORTHO05D005684 5.3e-48 194.9 153 63.4
THA.LOC104818773 Tarenaya hassleriana HOM05D001235 ORTHO05D005684 9.1e-48 194.1 159 59.7
BcaB07g29956 Brassica carinata HOM05D001235 ORTHO05D005684 1.2e-47 193.7 159 60.4
BcaC04g23619 Brassica carinata HOM05D001235 ORTHO05D005684 1.2e-47 193.7 157 61.8
A09p05840 Brassica napus HOM05D001235 ORTHO05D005684 1.2e-47 193.7 157 61.8
C02p59020 Brassica napus HOM05D001235 ORTHO05D005684 1.2e-47 193.7 159 60.4
BraA09t36226Z Brassica rapa HOM05D001235 ORTHO05D005684 1.2e-47 193.7 157 61.8
Carub.0006s2413 Capsella rubella HOM05D001235 ORTHO05D005684 1.6e-47 193.4 157 61.1
C09p06430 Brassica napus HOM05D001235 ORTHO05D005684 3.5e-47 192.2 157 61.1
BolC9t53563H Brassica oleracea HOM05D001235 ORTHO05D005684 3.5e-47 192.2 157 61.1
AT5G26570 Arabidopsis thaliana HOM05D001235 ORTHO05D005684 4.5e-47 191.8 157 60.5
Aa31LG11G10130 Aethionema arabicum HOM05D001235 ORTHO05D005684 5.9e-47 191.4 157 60.5
CDE04G0849 Ceratophyllum demersum HOM05D001235 ORTHO05D005684 7.7e-47 191.0 152 63.2
MELO3C017735.2 Cucumis melo HOM05D001235 ORTHO05D005684 1.3e-46 190.3 155 63.2
GSVIVG01031639001 Vitis vinifera HOM05D001235 ORTHO05D005684 1.3e-46 190.3 136 69.9
ClCG07G015490 Citrullus lanatus HOM05D001235 ORTHO05D005684 1.7e-46 189.9 159 61.6
BcaB04g19735 Brassica carinata HOM05D001235 ORTHO05D005684 2.2e-46 189.5 157 60.5
CsaV3_4G003110 Cucumis sativus L. HOM05D001235 ORTHO05D005684 2.9e-46 189.1 155 63.2
BcaC03g17860 Brassica carinata HOM05D001235 ORTHO05D005684 3.8e-46 188.7 167 57.5
Migut.N03329 Erythranthe guttata HOM05D001235 ORTHO05D005684 3.8e-46 188.7 159 62.3
Sp2g21450 Schrenkiella parvula HOM05D001235 ORTHO05D005684 3.8e-46 188.7 157 59.9
A02p39300 Brassica napus HOM05D001235 ORTHO05D005684 5.0e-46 188.3 159 58.5
BraA02t08895Z Brassica rapa HOM05D001235 ORTHO05D005684 5.0e-46 188.3 159 58.5
SEGI_29879 Sequoiadendron giganteum HOM05D001235 ORTHO05D005684 1.1e-45 187.2 156 62.2
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 1.1e-45 187.2 151 61.6
BolC2t11957H Brassica oleracea HOM05D001235 ORTHO05D005684 3.2e-45 185.7 159 57.2
CDE07G1609 Ceratophyllum demersum HOM05D001235 ORTHO05D005684 5.5e-45 184.9 150 62.7
HPP92_009959 Vanilla planifolia HOM05D001235 ORTHO05D005684 7.2e-45 184.5 167 55.7
Sed0003584 Sechium edule HOM05D001235 ORTHO05D005684 2.1e-44 183.0 157 60.5
Gohir.D09G202400 Gossypium hirsutum HOM05D001235 ORTHO05D005684 1.0e-43 180.6 159 61.6
Lj6C311G3 Lonicera japonica HOM05D001235 ORTHO05D005684 1.5e-42 176.8 120 71.7
Os12g0297500 Oryza sativa ssp. japonica HOM05D001235 ORTHO05D005684 1.5e-42 176.8 147 61.9
Mapoly0096s0069 Marchantia polymorpha HOM05D001235 ORTHO05D005684 2.0e-42 176.4 162 52.5
AUR62020915 Chenopodium quinoa HOM05D001235 ORTHO05D005684 7.5e-42 174.5 152 61.2
Gorai.006G226300 Gossypium raimondii HOM05D001235 ORTHO05D005684 8.2e-41 171.0 159 60.4
CSS0015752 Camellia sinensis var. sinensis HOM05D001235 ORTHO05D005684 7.0e-40 167.9 119 70.6
SGA_v2.0_scaffold28G12047 Striga asiatica HOM05D001235 ORTHO05D005684 2.7e-39 166.0 161 57.1
ATR0686G153 Amborella trichopoda HOM05D001235 ORTHO05D005684 1.0e-38 164.1 152 56.6
Gohir.A09G209000 Gossypium hirsutum HOM05D001235 ORTHO05D005684 1.7e-38 163.3 159 57.2
vmacro20797 Vaccinium macrocarpon HOM05D001235 ORTHO05D005684 4.2e-37 158.7 157 57.3
SMO146G0043 Selaginella moellendorffii HOM05D001235 ORTHO05D005684 2.6e-34 149.4 163 49.1
Pp3c18_14870 Physcomitrium patens HOM05D001235 ORTHO05D005684 4.4e-34 148.7 153 52.3
CBR_g30239 Chara braunii HOM05D001235 ORTHO05D005684 1.4e-32 143.7 140 50.7
Pp3c14_19150 Physcomitrium patens HOM05D001235 ORTHO05D005684 1.0e-27 127.5 153 45.1
Pp3c17_18900 Physcomitrium patens HOM05D001235 ORTHO05D005684 6.6e-22 108.2 146 42.5
MCO05G382 Micromonas commoda HOM05D001235 ORTHO05D005684 8.3e-17 91.3 146 36.3
PRCOL_00000902 Prasinoderma coloniale HOM05D001235 ORTHO05D005684 1.8e-16 90.1 148 39.9
MCO13G077 Micromonas commoda HOM05D001235 ORTHO05D005684 1.3e-14 84.0 150 34.0
Cre17.g719900 Chlamydomonas reinhardtii HOM05D001235 ORTHO05D005684 2.3e-14 83.2 158 36.1


User provided reference genes

Program Settings