Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RL07R4 Arachis hypogaea HOM05D007520 ORTHO05D009417 8.2e-123 443.7 225 100.0
TPR.G35527 Trifolium pratense HOM05D007520 ORTHO05D009417 1.5e-79 300.1 207 75.8
Psat6g100600 Pisum sativum HOM05D007520 ORTHO05D009417 4.4e-76 288.5 205 73.2
Lj2g0009613 Lotus japonicus HOM05D007520 ORTHO05D009417 2.2e-75 286.2 212 68.9
Medtr1g038820 Medicago truncatula HOM05D007520 ORTHO05D009417 7.1e-74 281.2 203 71.9
Phvul.003G001900 Phaseolus vulgaris HOM05D007520 ORTHO05D009417 1.2e-68 263.8 220 63.6
VMungo0251G1805 Vigna mungo HOM05D007520 ORTHO05D009417 9.9e-68 260.8 217 62.2
COL.COLO4_27582 Corchorus olitorius HOM05D007520 ORTHO05D009417 3.2e-66 255.8 203 63.5
Lalb_Chr10g0094861 Lupinus albus HOM05D007520 ORTHO05D009417 3.2e-66 255.8 193 71.5
Ciclev10016556m.g Citrus clementina HOM05D007520 ORTHO05D009417 7.1e-66 254.6 202 63.4
Actinidia11793 Actinidia chinensis HOM05D007520 ORTHO05D009417 1.6e-65 253.4 212 62.7
Duzib268G1867 Durio zibethinus HOM05D007520 ORTHO05D009417 2.3e-64 249.6 202 61.4
Hma1.2p1_0095F.1_g047520 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 4.3e-63 245.4 202 62.9
CANSAT78G2519 Cannabis sativa HOM05D007520 ORTHO05D009417 2.1e-62 243.0 204 62.3
Gorai.008G169800 Gossypium raimondii HOM05D007520 ORTHO05D009417 2.1e-62 243.0 202 60.9
QL03p039135 Quercus lobata HOM05D007520 ORTHO05D009417 2.1e-62 243.0 203 62.1
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 2.8e-62 242.7 205 62.9
Manes.17G089333 Manihot esculenta HOM05D007520 ORTHO05D009417 4.8e-62 241.9 208 62.0
THA.LOC104824117 Tarenaya hassleriana HOM05D007520 ORTHO05D009417 8.1e-62 241.1 206 58.7
TWI53G0076 Tripterygium wilfordii HOM05D007520 ORTHO05D009417 1.8e-61 240.0 205 58.5
Thhalv10005705m.g Eutrema salsugineum HOM05D007520 ORTHO05D009417 1.2e-60 237.3 209 62.7
Sed0012329 Sechium edule HOM05D007520 ORTHO05D009417 1.5e-60 236.9 211 58.8
MELO3C020056.2 Cucumis melo HOM05D007520 ORTHO05D009417 7.6e-60 234.6 211 56.9
CsaV3_5G012990 Cucumis sativus L. HOM05D007520 ORTHO05D009417 1.3e-59 233.8 211 56.4
CiPaw.06G058600 Carya illinoinensis HOM05D007520 ORTHO05D009417 4.9e-59 231.9 202 60.9
Migut.L00619 Erythranthe guttata HOM05D007520 ORTHO05D009417 1.1e-58 230.7 217 56.2
Prupe.1G338000 Prunus persica HOM05D007520 ORTHO05D009417 3.2e-58 229.2 203 59.6
Nn4g24547 Nelumbo nucifera HOM05D007520 ORTHO05D009417 4.2e-58 228.8 208 58.7
BolC7t43791H Brassica oleracea HOM05D007520 ORTHO05D009417 2.1e-57 226.5 210 59.0
Sp2g13330 Schrenkiella parvula HOM05D007520 ORTHO05D009417 3.5e-57 225.7 202 59.9
MD13G1015700 Malus domestica HOM05D007520 ORTHO05D009417 7.9e-57 224.6 203 59.6
RcHm_v2.0_Chr4g0433681 Rosa chinensis HOM05D007520 ORTHO05D009417 1.3e-56 223.8 202 57.4
CARHR144480 Cardamine hirsuta HOM05D007520 ORTHO05D009417 1.7e-56 223.4 209 57.9
AL5G11020 Arabidopsis lyrata HOM05D007520 ORTHO05D009417 3.0e-56 222.6 209 58.4
BraA06t27270Z Brassica rapa HOM05D007520 ORTHO05D009417 3.9e-56 222.2 210 58.1
BcaC06g31264 Brassica carinata HOM05D007520 ORTHO05D009417 6.6e-56 221.5 211 58.3
Aqoxy5G01264 Aquilegia oxysepala HOM05D007520 ORTHO05D009417 1.1e-55 220.7 219 52.5
AT2G01905 Arabidopsis thaliana HOM05D007520 ORTHO05D009417 7.4e-55 218.0 209 58.4
C07p32740 Brassica napus HOM05D007520 ORTHO05D009417 9.6e-55 217.6 210 58.6
Aa31LG2G8010 Aethionema arabicum HOM05D007520 ORTHO05D009417 2.1e-54 216.5 231 53.2
Atru.chr11.1007 Acer truncatum HOM05D007520 ORTHO05D009417 1.4e-53 213.8 187 59.4
PGR042G3173 Punica granatum HOM05D007520 ORTHO05D009417 1.4e-53 213.8 204 55.9
ECA246G0416 Erigeron canadensis HOM05D007520 ORTHO05D009417 4.0e-53 212.2 206 56.3
FvH4_4g26110 Fragaria vesca HOM05D007520 ORTHO05D009417 4.0e-53 212.2 202 55.9
A06p43940 Brassica napus HOM05D007520 ORTHO05D009417 5.3e-53 211.8 210 57.6
Nitab4.5_0004339g0060 Nicotiana tabacum HOM05D007520 ORTHO05D009417 5.8e-52 208.4 200 58.0
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 5.8e-52 208.4 217 52.1
Nitab4.5_0010118g0020 Nicotiana tabacum HOM05D007520 ORTHO05D009417 1.7e-51 206.8 201 57.2
Sopen04g032100 Solanum pennellii HOM05D007520 ORTHO05D009417 3.8e-51 205.7 205 53.7
SGA_v2.0_scaffold172G39028 Striga asiatica HOM05D007520 ORTHO05D009417 8.4e-51 204.5 203 54.2
Solyc04g078500.1 Solanum lycopersicum HOM05D007520 ORTHO05D009417 1.9e-50 203.4 199 54.3
CAN.G1812.4 Capsicum annuum HOM05D007520 ORTHO05D009417 2.4e-50 203.0 199 54.3
HanXRQChr12g0379401 Helianthus annuus HOM05D007520 ORTHO05D009417 3.2e-50 202.6 191 57.6
PSO017G5472 Papaver somniferum HOM05D007520 ORTHO05D009417 7.1e-50 201.4 207 51.2
Sc15g0004470 Simmondsia chinensis HOM05D007520 ORTHO05D009417 2.7e-49 199.5 203 53.2
PSO478G1043 Papaver somniferum HOM05D007520 ORTHO05D009417 4.6e-49 198.7 212 49.5
Zm00001eb010100 Zea mays HOM05D007520 ORTHO05D009417 3.0e-48 196.1 211 46.4
Thecc.02G303900 Theobroma cacao HOM05D007520 ORTHO05D009417 4.3e-47 192.2 148 64.2
Glyma.14G224300 Glycine max HOM05D007520 ORTHO05D009417 7.4e-47 191.4 132 72.7
EL10Ac1g01972 Beta vulgaris HOM05D007520 ORTHO05D009417 1.1e-45 187.6 212 48.6
Lsat_1_v5_gn_5_170921 Lactuca sativa HOM05D007520 ORTHO05D009417 9.0e-45 184.5 208 49.0
Ah.11g041100 Amaranthus hybridus HOM05D007520 ORTHO05D009417 6.0e-41 171.8 204 46.6
FAN17G2852 Fragaria x ananassa HOM05D007520 ORTHO05D009417 1.0e-40 171.0 192 50.0
FAN12G3032 Fragaria x ananassa HOM05D007520 ORTHO05D009417 3.0e-40 169.5 178 53.4
FAN12G3090 Fragaria x ananassa HOM05D007520 ORTHO05D009417 3.0e-40 169.5 178 53.4
Rhsim09G0085600 Rhododendron simsii HOM05D007520 ORTHO05D009417 3.1e-37 159.5 161 56.5
Atru.BG.295.p Acer truncatum HOM05D007520 ORTHO05D009417 2.0e-36 156.8 134 60.4
Dinv08902 Davidia involucrata HOM05D007520 ORTHO05D009417 4.5e-36 155.6 140 62.1
FAN22G1570 Fragaria x ananassa HOM05D000296 ORTHO05D000175 4.2e-34 149.1 138 55.8
GSVIVG01011595001 Vitis vinifera HOM05D007520 ORTHO05D009417 4.8e-30 135.6 91 71.4
DCAR_002655 Daucus carota HOM05D007520 ORTHO05D009417 1.1e-29 134.4 130 56.2
AUR62036879 Chenopodium quinoa HOM05D007520 ORTHO05D009417 6.9e-29 131.7 144 46.5
CSS0024703 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 7.7e-28 128.3 139 51.1
Hma1.2p1_0095F.1_g047530 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 7.7e-28 128.3 231 40.7
Gohir.D12G157000 Gossypium hirsutum HOM05D007520 ORTHO05D009417 1.3e-27 127.5 160 45.0
SalBow4G2630 Salvia bowleyana HOM05D007520 ORTHO05D009417 1.7e-27 127.1 134 50.0
Gohir.A12G153900 Gossypium hirsutum HOM05D007520 ORTHO05D009417 2.9e-27 126.3 135 49.6
SalBow3G0394 Salvia bowleyana HOM05D007520 ORTHO05D009417 3.8e-27 125.9 128 51.6
Cc11_g05730 Coffea canephora HOM05D007520 ORTHO05D009417 5.0e-27 125.6 112 60.7
GSVIVG01011596001 Vitis vinifera HOM05D007520 ORTHO05D009417 5.5e-26 122.1 109 58.7
MSTRG.8107 Avicennia marina HOM05D007520 ORTHO05D009417 6.1e-25 118.6 119 54.6
CSS0003025 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 7.9e-25 118.2 139 48.2
CSS0021820 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 7.9e-25 118.2 97 60.8
CSS0032687 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 7.9e-25 118.2 97 60.8
Lj3A859T72 Lonicera japonica HOM05D007520 ORTHO05D009417 1.0e-24 117.9 133 53.4
ClCG11G001000 Citrullus lanatus HOM05D007520 ORTHO05D009417 5.1e-24 115.5 148 43.9
Carub.0005s0090 Capsella rubella HOM05D007520 ORTHO05D009417 8.8e-24 114.8 90 64.4
Carub.0005s0089 Capsella rubella HOM05D007520 ORTHO05D009417 1.1e-23 114.4 127 51.2
PGSC0003DMG400013121 Solanum tuberosum HOM05D007520 ORTHO05D009417 1.5e-23 114.0 115 53.9
HPP92_016407 Vanilla planifolia HOM05D007520 ORTHO05D009417 6.9e-21 105.1 95 52.6
SalBow6G7185 Salvia bowleyana HOM05D007520 ORTHO05D009417 2.9e-19 99.8 101 51.5
Mapoly0059s0009 Marchantia polymorpha HOM05D007520 ORTHO05D009417 3.8e-19 99.4 200 32.0
Pp3c10_19450 Physcomitrium patens HOM05D007520 ORTHO05D009417 7.2e-18 95.1 193 31.1
CSS0008274 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 7.9e-17 91.7 65 67.7
SalBow2G3493 Salvia bowleyana HOM05D007520 ORTHO05D009417 1.0e-16 91.3 89 53.9
Haze_10814 Corylus avellana HOM05D007520 ORTHO05D009417 9.7e-15 84.7 73 60.3
HPP92_016406 Vanilla planifolia HOM05D007520 ORTHO05D009417 9.7e-15 84.7 88 54.5
CDE06G1244 Ceratophyllum demersum HOM05D007520 ORTHO05D009417 7.7e-12 75.1 64 56.2
Dinv08901 Davidia involucrata HOM05D007520 ORTHO05D009417 1.6e-09 67.4 48 68.8
AUR62026615 Chenopodium quinoa HOM05D007520 ORTHO05D009417 4.7e-09 65.9 80 38.8
AUR62032185 Chenopodium quinoa HOM05D007520 ORTHO05D009417 2.8e-06 56.6 69 36.2
AUR62033544 Chenopodium quinoa HOM05D000122 ORTHO05D009417 8.2e-06 55.1 80 31.2
Eucgr.B02652 Eucalyptus grandis HOM05D007520 ORTHO05D009417 8.2e-06 55.1 51 54.9


User provided reference genes

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