Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RK1GDQ Arachis hypogaea HOM05D007228 ORTHO05D009099 0.0e+00 1288.9 651 100.0
arahy.Tifrunner.gnm1.ann1.E4K3LT Arachis hypogaea HOM05D007228 ORTHO05D009099 0.0e+00 1273.8 651 98.8
Glyma.08G006100 Glycine max HOM05D007228 ORTHO05D009099 3.2e-284 981.5 652 75.6
Lj4g0027006 Lotus japonicus HOM05D007228 ORTHO05D009099 2.1e-283 978.8 654 75.1
Ca_16830_v3 Cicer arietinum L. HOM05D007228 ORTHO05D009099 1.1e-281 973.0 652 75.3
Medtr8g095540 Medicago truncatula HOM05D007228 ORTHO05D009099 3.5e-275 951.4 652 73.5
VMungo0251G0919 Vigna mungo HOM05D007228 ORTHO05D009099 2.6e-262 908.7 662 71.8
Psat7g040280 Pisum sativum HOM05D007228 ORTHO05D009099 7.9e-251 870.5 655 67.9
Phvul.002G279800 Phaseolus vulgaris HOM05D007228 ORTHO05D009099 2.2e-245 852.4 655 68.9
TPR.G12794 Trifolium pratense HOM05D007228 ORTHO05D009099 7.7e-230 800.8 561 70.8
QL10p000149 Quercus lobata HOM05D007228 ORTHO05D009099 4.1e-207 725.3 656 57.9
Atru.chr6.1953 Acer truncatum HOM05D007228 ORTHO05D009099 1.2e-206 723.8 659 58.1
Potri.015G109700 Populus trichocarpa HOM05D007228 ORTHO05D009099 3.4e-201 705.7 659 56.9
Ciclev10030919m.g Citrus clementina HOM05D007228 ORTHO05D009099 7.5e-201 704.5 659 56.6
Dinv13695 Davidia involucrata HOM05D007228 ORTHO05D009099 5.4e-199 698.4 662 54.8
MD06G1128600 Malus domestica HOM05D007228 ORTHO05D009099 1.0e-197 694.1 688 53.8
FvH4_5g10000 Fragaria vesca HOM05D007228 ORTHO05D009099 4.7e-195 685.3 658 54.6
TWI39G0517 Tripterygium wilfordii HOM05D007228 ORTHO05D009099 1.2e-193 680.6 658 54.3
FAN18G1110 Fragaria x ananassa HOM05D007228 ORTHO05D009099 1.7e-192 676.8 656 54.3
FAN04G0692 Fragaria x ananassa HOM05D007228 ORTHO05D009099 4.9e-192 675.2 638 55.0
Cpa.g.sc13.201 Carica papaya HOM05D007228 ORTHO05D009099 1.4e-191 673.7 663 53.5
Haze_07072 Corylus avellana HOM05D007228 ORTHO05D009099 1.4e-191 673.7 707 54.7
GSVIVG01014990001 Vitis vinifera HOM05D007228 ORTHO05D009099 3.9e-189 665.6 659 53.7
Duzib205G0703 Durio zibethinus HOM05D007228 ORTHO05D009099 5.6e-188 661.8 668 53.1
Hma1.2p1_0338F.1_g129520 Hydrangea macrophylla HOM05D007228 ORTHO05D009099 4.0e-186 655.6 666 53.5
Manes.06G128600 Manihot esculenta HOM05D007228 ORTHO05D009099 1.0e-181 641.0 658 51.7
FAN08G0661 Fragaria x ananassa HOM05D007228 ORTHO05D009099 2.3e-181 639.8 637 53.2
Gohir.D12G197500 Gossypium hirsutum HOM05D007228 ORTHO05D009099 1.4e-178 630.6 662 51.5
Actinidia18280 Actinidia chinensis HOM05D007228 ORTHO05D009099 1.4e-175 620.5 673 50.2
RcHm_v2.0_Chr7g0188261 Rosa chinensis HOM05D007228 ORTHO05D009099 5.4e-175 618.6 590 54.9
Solyc03g117990.1 Solanum lycopersicum HOM05D007228 ORTHO05D009099 5.2e-170 602.1 660 49.8
Sopen03g036890 Solanum pennellii HOM05D007228 ORTHO05D009099 5.2e-170 602.1 660 50.3
Rhsim08G0200200 Rhododendron simsii HOM05D007228 ORTHO05D009099 8.9e-170 601.3 682 49.6
Aqoxy5G02968 Aquilegia oxysepala HOM05D007228 ORTHO05D009099 1.3e-168 597.4 664 48.2
Gohir.A12G195100 Gossypium hirsutum HOM05D007228 ORTHO05D009099 1.3e-168 597.4 648 49.8
Gorai.008G212000 Gossypium raimondii HOM05D007228 ORTHO05D009099 2.9e-168 596.3 641 50.5
Peaxi162Scf00314g00833 Petunia axillaris HOM05D007228 ORTHO05D009099 3.8e-168 595.9 660 49.7
COL.COLO4_37286 Corchorus olitorius HOM05D007228 ORTHO05D009099 6.0e-166 588.6 664 49.1
CARHR205770 Cardamine hirsuta HOM05D007228 ORTHO05D009099 6.6e-165 585.1 665 48.6
Prupe.5G138400 Prunus persica HOM05D007228 ORTHO05D009099 1.5e-164 583.9 530 57.4
AL6G17680 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 3.6e-163 579.3 664 48.6
BraA10t44962Z Brassica rapa HOM05D007228 ORTHO05D009099 1.1e-162 577.8 671 48.7
Thhalv10012911m.g Eutrema salsugineum HOM05D007228 ORTHO05D009099 5.2e-162 575.5 668 48.8
PSO017G4664 Papaver somniferum HOM05D007228 ORTHO05D009099 6.9e-162 575.1 751 44.5
Cfa018687 Carpinus fangiana HOM05D007228 ORTHO05D009099 9.0e-162 574.7 485 61.0
Carub.0006s0635 Capsella rubella HOM05D007228 ORTHO05D009099 2.0e-161 573.5 666 48.3
BcaC06g32443 Brassica carinata HOM05D007228 ORTHO05D009099 1.1e-159 567.8 669 47.8
C09p69520 Brassica napus HOM05D007228 ORTHO05D009099 1.9e-159 567.0 670 48.1
A10p29130 Brassica napus HOM05D007228 ORTHO05D009099 3.2e-159 566.2 671 48.0
BolC9t59696H Brassica oleracea HOM05D007228 ORTHO05D009099 3.2e-159 566.2 669 48.0
Manes.14G042701 Manihot esculenta HOM05D007228 ORTHO05D009099 5.4e-159 565.5 651 48.2
AT5G07380 Arabidopsis thaliana HOM05D007228 ORTHO05D009099 1.2e-158 564.3 663 47.2
Migut.D01167 Erythranthe guttata HOM05D007228 ORTHO05D009099 2.1e-158 563.5 666 46.7
Sabra15G0131800 Salix brachista HOM05D007228 ORTHO05D009099 2.1e-158 563.5 626 50.2
PSO478G4831 Papaver somniferum HOM05D007228 ORTHO05D009099 2.7e-158 563.1 782 43.1
Nitab4.5_0011883g0020 Nicotiana tabacum HOM05D007228 ORTHO05D009099 1.9e-156 557.0 660 48.0
Nn3g16198 Nelumbo nucifera HOM05D007228 ORTHO05D009099 8.1e-155 551.6 616 48.5
SalBow1G3473 Salvia bowleyana HOM05D007228 ORTHO05D009099 5.3e-154 548.9 666 45.2
Nitab4.5_0000976g0280 Nicotiana tabacum HOM05D007228 ORTHO05D009099 4.5e-153 545.8 652 47.5
THA.LOC104819419 Tarenaya hassleriana HOM05D007228 ORTHO05D009099 5.8e-153 545.4 666 46.7
ECA247G3190 Erigeron canadensis HOM05D007228 ORTHO05D009099 2.4e-151 540.0 596 49.7
Cc04_g05590 Coffea canephora HOM05D007228 ORTHO05D009099 1.6e-150 537.3 642 46.3
MBI11_g17279_MAGBIO Magnolia biondii HOM05D007228 ORTHO05D009099 7.9e-150 535.0 593 48.7
SGA_v2.0_scaffold515G52653 Striga asiatica HOM05D007228 ORTHO05D009099 2.3e-149 533.5 667 45.9
vmacro19097 Vaccinium macrocarpon HOM05D007228 ORTHO05D009099 2.5e-148 530.0 497 55.7
CAN.G1008.38 Capsicum annuum HOM05D007228 ORTHO05D009099 2.4e-143 513.5 686 44.2
Sed0011749 Sechium edule HOM05D007228 ORTHO05D009099 6.0e-142 508.8 665 45.4
ClCG07G006120 Citrullus lanatus HOM05D007228 ORTHO05D009099 9.0e-138 495.0 686 44.8
CSS0045118 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 1.9e-135 487.3 472 54.2
Lsat_1_v5_gn_1_30460 Lactuca sativa HOM05D007228 ORTHO05D009099 7.1e-135 485.3 598 45.7
TAR629G1179 Trochodendron aralioides HOM05D007228 ORTHO05D009099 5.1e-133 479.2 462 54.1
Aa31LG3G18990 Aethionema arabicum HOM05D007228 ORTHO05D009099 3.7e-131 473.0 663 44.8
HanXRQChr08g0229031 Helianthus annuus HOM05D007228 ORTHO05D009099 1.8e-130 470.7 523 48.8
Thecc.03G143400 Theobroma cacao HOM05D007228 ORTHO05D009099 3.1e-130 469.9 423 55.3
CsaV3_5G013390 Cucumis sativus L. HOM05D007228 ORTHO05D009099 2.3e-125 453.8 716 41.2
Lj9C489T6 Lonicera japonica HOM05D007228 ORTHO05D009099 2.3e-125 453.8 654 42.7
MELO3C018355.2 Cucumis melo HOM05D007228 ORTHO05D009099 5.3e-122 442.6 592 44.3
Zm00001eb334150 Zea mays HOM05D007228 ORTHO05D009099 3.2e-119 433.3 696 38.2
Eucgr.E04338 Eucalyptus grandis HOM05D007228 ORTHO05D009099 1.1e-116 424.9 655 40.0
EL10Ac5g11261 Beta vulgaris HOM05D007228 ORTHO05D009099 2.8e-115 420.2 689 39.3
PGR142G1350 Punica granatum HOM05D007228 ORTHO05D009099 2.4e-114 417.2 726 38.6
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 2.0e-113 414.1 706 38.1
Lalb_Chr12g0202641 Lupinus albus HOM05D007228 ORTHO05D009099 4.5e-113 412.9 256 81.6
Os01g0103900 Oryza sativa ssp. japonica HOM05D007228 ORTHO05D009099 5.3e-106 389.4 490 43.5
AUR62036968 Chenopodium quinoa HOM05D007228 ORTHO05D009099 7.2e-103 379.0 676 35.7
Hund02521 Selenicereus undatus HOM05D007228 ORTHO05D009099 4.7e-94 349.7 800 32.0
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 1.7e-91 341.3 653 36.4
AUR62032199 Chenopodium quinoa HOM05D007228 ORTHO05D009099 9.5e-87 325.5 698 32.7
Psat3g128520 Pisum sativum HOM05D007228 ORTHO05D009099 1.2e-86 325.1 422 47.4
Psat0s3642g0120 Pisum sativum HOM05D007228 ORTHO05D009099 5.2e-85 319.7 392 48.7
PGSC0003DMG400014227 Solanum tuberosum HOM05D007228 ORTHO05D009099 1.1e-82 312.0 375 46.4
SEGI_11491 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 1.3e-80 305.1 437 40.0
Sc04g0000080 Simmondsia chinensis HOM05D007228 ORTHO05D009099 3.8e-80 303.5 507 37.9
Sc04g0000120 Simmondsia chinensis HOM05D007228 ORTHO05D009099 6.6e-80 302.8 507 37.9
Lalb_Chr12g0202651 Lupinus albus HOM05D007228 ORTHO05D009099 4.9e-75 286.6 194 71.6
unitig_747.g21316 Utricularia gibba HOM05D002839 ORTHO05D003349 1.0e-72 278.9 516 37.6
CSS0001938 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 1.5e-71 275.0 263 56.3
GSVIVG01035283001 Vitis vinifera HOM05D007228 ORTHO05D009099 8.0e-70 269.2 264 55.3
TPR.G21492 Trifolium pratense HOM05D007228 ORTHO05D009099 1.4e-61 241.9 203 65.0
SMO119G0281 Selaginella moellendorffii HOM05D007228 ORTHO05D009099 3.7e-59 233.8 491 32.2
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 3.0e-56 224.2 179 61.5
Lalb_Chr12g0202661 Lupinus albus HOM05D007228 ORTHO05D009099 8.4e-51 206.1 174 63.2
HPP92_021579 Vanilla planifolia HOM05D007228 ORTHO05D009099 5.4e-50 203.4 392 35.7
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 2.6e-44 184.5 175 54.3
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.2e-41 175.6 343 33.8
AagrBONN_evm.TU.Sc2ySwM_344.3780 Anthoceros agrestis HOM05D007228 ORTHO05D009099 1.5e-36 158.7 263 34.2
MSTRG.9383 Avicennia marina HOM05D007228 ORTHO05D009099 4.8e-30 137.1 197 39.6
AUR62009120 Chenopodium quinoa HOM05D007228 ORTHO05D009099 6.4e-27 126.7 489 27.2
HanXRQChr08g0229021 Helianthus annuus HOM05D007228 ORTHO05D009099 1.0e-24 119.4 131 51.9
CDE06G2808 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 7.6e-20 103.2 515 21.9
HPP92_021580 Vanilla planifolia HOM05D007228 ORTHO05D009099 1.1e-15 89.4 161 35.4
AL468U10020 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 7.4e-15 86.7 94 47.9
CDE02G0692 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 3.1e-13 81.3 95 41.1
Sp6g35490 Schrenkiella parvula HOM05D007228 ORTHO05D009099 3.1e-13 81.3 135 43.7


User provided reference genes

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