Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RJRI99 Arachis hypogaea HOM05D001519 ORTHO05D001403 1.3e-51 206.1 99 100.0
arahy.Tifrunner.gnm1.ann1.CJE6I1 Arachis hypogaea HOM05D001519 ORTHO05D001403 8.8e-45 183.3 107 86.9
arahy.Tifrunner.gnm1.ann1.CRBZ62 Arachis hypogaea HOM05D001519 ORTHO05D001403 2.0e-44 182.2 107 86.0
arahy.Tifrunner.gnm1.ann1.DP20MQ Arachis hypogaea HOM05D001519 ORTHO05D001403 3.1e-42 174.9 107 83.2
arahy.Tifrunner.gnm1.ann1.7XG90Z Arachis hypogaea HOM05D001519 ORTHO05D001403 1.6e-41 172.6 107 81.3
arahy.Tifrunner.gnm1.ann1.FLQ7SK Arachis hypogaea HOM05D001519 ORTHO05D001403 5.9e-41 170.6 105 81.9
arahy.Tifrunner.gnm1.ann1.Y4KT8J Arachis hypogaea HOM05D001519 ORTHO05D001403 4.4e-36 154.5 77 93.5
TPR.G12232 Trifolium pratense HOM05D001519 ORTHO05D001403 1.3e-35 152.9 101 71.3
Ca_04630_v3 Cicer arietinum L. HOM05D001519 ORTHO05D001403 5.4e-34 147.5 100 71.0
Lj1g0019575 Lotus japonicus HOM05D001519 ORTHO05D001403 7.0e-34 147.1 101 68.3
Psat5g202080 Pisum sativum HOM05D001519 ORTHO05D001403 1.2e-33 146.4 101 70.3
Medtr3g024400 Medicago truncatula HOM05D001519 ORTHO05D001403 1.7e-32 142.5 100 70.0
FAN21G4009 Fragaria x ananassa HOM05D001519 ORTHO05D001403 2.9e-32 141.7 101 66.3
FvH4_3g35760 Fragaria vesca HOM05D001519 ORTHO05D001403 2.5e-31 138.7 101 65.3
FAN11G0956 Fragaria x ananassa HOM05D001519 ORTHO05D001403 2.5e-31 138.7 101 65.3
Lalb_Chr20g0117641 Lupinus albus HOM05D001519 ORTHO05D001403 2.5e-31 138.7 102 66.7
CiPaw.09G132300 Carya illinoinensis HOM05D001519 ORTHO05D001403 5.6e-31 137.5 101 64.4
RcHm_v2.0_Chr5g0012591 Rosa chinensis HOM05D001519 ORTHO05D001403 7.3e-31 137.1 101 65.3
Ciclev10016169m.g Citrus clementina HOM05D001519 ORTHO05D001403 9.5e-31 136.7 102 62.7
Sed0020126 Sechium edule HOM05D001519 ORTHO05D001403 1.2e-30 136.3 101 63.4
Hund21363 Selenicereus undatus HOM05D001519 ORTHO05D001403 1.6e-30 136.0 100 66.0
Hund31135 Selenicereus undatus HOM05D001519 ORTHO05D001403 1.6e-30 136.0 100 66.0
Phvul.006G168700 Phaseolus vulgaris HOM05D001519 ORTHO05D001403 2.1e-30 135.6 100 65.0
ClCG07G003760 Citrullus lanatus HOM05D001519 ORTHO05D001403 2.8e-30 135.2 101 63.4
TAR381G0301 Trochodendron aralioides HOM05D001519 ORTHO05D001403 2.8e-30 135.2 99 65.7
PGR142G3347 Punica granatum HOM05D001519 ORTHO05D001403 4.7e-30 134.4 101 64.4
FAN25G2732 Fragaria x ananassa HOM05D001519 ORTHO05D001403 6.1e-30 134.0 101 63.4
Prupe.4G071600 Prunus persica HOM05D001519 ORTHO05D001403 6.1e-30 134.0 101 64.4
QL05p052713 Quercus lobata HOM05D001519 ORTHO05D001403 8.0e-30 133.7 101 63.4
AUR62035832 Chenopodium quinoa HOM05D001519 ORTHO05D001403 1.0e-29 133.3 96 66.7
GSVIVG01021319001 Vitis vinifera HOM05D001519 ORTHO05D001403 1.0e-29 133.3 101 63.4
MELO3C026567.2 Cucumis melo HOM05D001519 ORTHO05D001403 3.0e-29 131.7 101 60.4
Haze_05459 Corylus avellana HOM05D001519 ORTHO05D001403 5.2e-29 131.0 101 64.4
MBI02_g26228_MAGBIO Magnolia biondii HOM05D001519 ORTHO05D001403 5.2e-29 131.0 101 62.4
Sc17g0005490 Simmondsia chinensis HOM05D001519 ORTHO05D001403 5.2e-29 131.0 95 65.3
EL10Ac8g19821 Beta vulgaris HOM05D001519 ORTHO05D001403 6.8e-29 130.6 94 67.0
AUR62027623 Chenopodium quinoa HOM05D001519 ORTHO05D001403 8.9e-29 130.2 96 65.6
Potri.011G076800 Populus trichocarpa HOM05D001519 ORTHO05D001403 8.9e-29 130.2 101 61.4
CsaV3_5G008570 Cucumis sativus L. HOM05D001519 ORTHO05D001403 1.2e-28 129.8 101 60.4
TWI09G1171 Tripterygium wilfordii HOM05D001519 ORTHO05D001403 1.5e-28 129.4 101 59.4
FAN11G0389 Fragaria x ananassa HOM05D001519 ORTHO05D001403 2.6e-28 128.6 100 59.0
vmacro00975 Vaccinium macrocarpon HOM05D001519 ORTHO05D001403 2.6e-28 128.6 99 61.6
Nitab4.5_0005943g0040 Nicotiana tabacum HOM05D001519 ORTHO05D001403 3.4e-28 128.3 95 65.3
Oeu040944.1 Olea europaea HOM05D001519 ORTHO05D001403 3.4e-28 128.3 100 58.0
CSS0008036 Camellia sinensis var. sinensis HOM05D001519 ORTHO05D001403 4.4e-28 127.9 100 61.0
CSS0034902 Camellia sinensis var. sinensis HOM05D001519 ORTHO05D001403 4.4e-28 127.9 100 61.0
CAN.G257.112 Capsicum annuum HOM05D001519 ORTHO05D001403 4.4e-28 127.9 95 65.3
PSO541G3409 Papaver somniferum HOM05D001519 ORTHO05D001403 4.4e-28 127.9 97 61.9
arahy.Tifrunner.gnm1.ann1.W1PD5V Arachis hypogaea HOM05D001519 ORTHO05D001403 5.7e-28 127.5 67 94.0
CANSAT35G1674 Cannabis sativa HOM05D001519 ORTHO05D001403 5.7e-28 127.5 107 57.9
Cpa.g.sc1431.1 Carica papaya HOM05D001519 ORTHO05D001403 5.7e-28 127.5 104 60.6
FvH4_3g33210 Fragaria vesca HOM05D001519 ORTHO05D001403 7.5e-28 127.1 100 58.0
VMungo0540G1455 Vigna mungo HOM05D001519 ORTHO05D001403 7.5e-28 127.1 92 65.2
Atru.chr10.1473 Acer truncatum HOM05D001519 ORTHO05D001403 9.8e-28 126.7 102 61.8
Lj2A312T42 Lonicera japonica HOM05D001519 ORTHO05D001403 9.8e-28 126.7 95 64.2
Sabra11G0063900 Salix brachista HOM05D001519 ORTHO05D001403 9.8e-28 126.7 101 59.4
PSO675G0313 Papaver somniferum HOM05D001519 ORTHO05D001403 2.2e-27 125.6 97 59.8
ATR0618G303 Amborella trichopoda HOM05D001519 ORTHO05D001403 2.9e-27 125.2 100 59.0
Aqoxy4G01914 Aquilegia oxysepala HOM05D001519 ORTHO05D001403 4.9e-27 124.4 95 64.2
CAN.G257.109 Capsicum annuum HOM05D001519 ORTHO05D001403 4.9e-27 124.4 100 62.0
Eucgr.D00407 Eucalyptus grandis HOM05D001519 ORTHO05D001403 4.9e-27 124.4 101 60.4
MD10G1270000 Malus domestica HOM05D001519 ORTHO05D001403 4.9e-27 124.4 102 59.8
Nn5g28078 Nelumbo nucifera HOM05D001519 ORTHO05D001403 4.9e-27 124.4 99 57.6
Sopen02g020590 Solanum pennellii HOM05D001519 ORTHO05D001403 4.9e-27 124.4 95 62.1
Gorai.009G158900 Gossypium raimondii HOM05D001519 ORTHO05D001403 6.4e-27 124.0 101 57.4
Manes.14G149000 Manihot esculenta HOM05D001519 ORTHO05D001403 6.4e-27 124.0 96 58.3
Solyc02g071570.4 Solanum lycopersicum HOM05D001519 ORTHO05D001403 8.3e-27 123.6 93 63.4
PGSC0003DMG400007246 Solanum tuberosum HOM05D001519 ORTHO05D001403 8.3e-27 123.6 95 62.1
Nitab4.5_0003913g0070 Nicotiana tabacum HOM05D001519 ORTHO05D001403 1.1e-26 123.2 95 64.2
Thecc.06G160000 Theobroma cacao HOM05D001519 ORTHO05D001403 1.4e-26 122.9 101 59.4
MD00G1093300 Malus domestica HOM05D001519 ORTHO05D001403 1.8e-26 122.5 99 61.6
DCAR_007920 Daucus carota HOM05D001519 ORTHO05D001403 2.4e-26 122.1 100 58.0
Actinidia19472 Actinidia chinensis HOM05D001519 ORTHO05D001403 3.2e-26 121.7 96 62.5
Peaxi162Scf00032g00031 Petunia axillaris HOM05D001519 ORTHO05D001403 3.2e-26 121.7 95 63.2
COL.COLO4_22822 Corchorus olitorius HOM05D001519 ORTHO05D001403 4.1e-26 121.3 101 57.4
ECA246G5076 Erigeron canadensis HOM05D001519 ORTHO05D001403 2.0e-25 119.0 100 56.0
arahy.Tifrunner.gnm1.ann1.X2MCXS Arachis hypogaea HOM05D001519 ORTHO05D001403 2.7e-25 118.6 61 95.1
SalBow8G1654 Salvia bowleyana HOM05D001519 ORTHO05D001403 5.9e-25 117.5 94 60.6
Cc09_g10070 Coffea canephora HOM05D001519 ORTHO05D001403 7.8e-25 117.1 93 61.3
arahy.Tifrunner.gnm1.ann1.6UB4C0 Arachis hypogaea HOM05D001519 ORTHO05D001403 1.3e-24 116.3 61 91.8
Duzib235G1155 Durio zibethinus HOM05D001519 ORTHO05D001403 1.3e-24 116.3 100 57.0
Rhsim12G0005800 Rhododendron simsii HOM05D001519 ORTHO05D001403 1.3e-24 116.3 127 47.2
SalBow8G0244 Salvia bowleyana HOM05D001519 ORTHO05D001403 1.3e-24 116.3 94 59.6
MSTRG.12878 Avicennia marina HOM05D001519 ORTHO05D001403 1.7e-24 115.9 93 62.4
CDE05G1809 Ceratophyllum demersum HOM05D001519 ORTHO05D001403 2.3e-24 115.5 93 60.2
A01p10990 Brassica napus HOM05D001519 ORTHO05D001403 3.9e-24 114.8 102 55.9
BraA01t01046Z Brassica rapa HOM05D001519 ORTHO05D001403 3.9e-24 114.8 102 55.9
Gorai.012G035700 Gossypium raimondii HOM05D001519 ORTHO05D001403 5.0e-24 114.4 101 51.5
Migut.F01503 Erythranthe guttata HOM05D001519 ORTHO05D001403 6.6e-24 114.0 93 59.1
C01p13010 Brassica napus HOM05D001519 ORTHO05D001403 8.6e-24 113.6 102 54.9
BolC1t01276H Brassica oleracea HOM05D001519 ORTHO05D001403 8.6e-24 113.6 102 54.9
Thhalv10026338m.g Eutrema salsugineum HOM05D001519 ORTHO05D001403 1.1e-23 113.2 100 58.0
SGA_v2.0_scaffold1G00117 Striga asiatica HOM05D001519 ORTHO05D001403 1.5e-23 112.8 96 54.2
Gohir.D04G031550 Gossypium hirsutum HOM05D001519 ORTHO05D001403 2.5e-23 112.1 101 50.5
BcaNung04026 Brassica carinata HOM05D001519 ORTHO05D001403 3.3e-23 111.7 100 56.0
Gohir.A06G143900 Gossypium hirsutum HOM05D001519 ORTHO05D001403 5.6e-23 110.9 101 50.5
Lsat_1_v5_gn_5_21060 Lactuca sativa HOM05D001519 ORTHO05D001403 1.2e-22 109.8 100 52.0
CARHR225880 Cardamine hirsuta HOM05D001519 ORTHO05D001403 1.6e-22 109.4 101 53.5
HanXRQChr07g0203331 Helianthus annuus HOM05D001519 ORTHO05D001403 1.6e-22 109.4 102 50.0
HanXRQChr07g0203241 Helianthus annuus HOM05D001519 ORTHO05D001403 2.8e-22 108.6 102 50.0
Sed0009489 Sechium edule HOM05D001519 ORTHO05D001403 1.1e-21 106.7 93 57.0
AL7G35190 Arabidopsis lyrata HOM05D001519 ORTHO05D001403 1.4e-21 106.3 100 53.0
Ah.14g086830 Amaranthus hybridus HOM05D000065 ORTHO05D000162 2.3e-21 105.5 82 62.2
arahy.Tifrunner.gnm1.ann1.NKM7VA Arachis hypogaea HOM05D001519 ORTHO05D001403 3.1e-21 105.1 57 87.7
Sp7g17690 Schrenkiella parvula HOM05D001519 ORTHO05D001403 3.1e-21 105.1 100 51.0
Carub.0007s2220 Capsella rubella HOM05D001519 ORTHO05D001403 4.0e-21 104.8 100 53.0
Dinv04556 Davidia involucrata HOM05D001519 ORTHO05D001403 4.0e-21 104.8 77 64.9
Aa31LG6G1650 Aethionema arabicum HOM05D001519 ORTHO05D001403 5.2e-21 104.4 94 53.2
AT4G18975 Arabidopsis thaliana HOM05D001519 ORTHO05D001403 1.2e-20 103.2 94 54.3
Zm00001eb323740 Zea mays HOM05D001519 ORTHO05D001403 2.0e-20 102.4 96 52.1
unitig_748.g7643 Utricularia gibba HOM05D001519 ORTHO05D008748 7.5e-20 100.5 89 53.9
arahy.Tifrunner.gnm1.ann1.CN8S2Q Arachis hypogaea HOM05D001519 ORTHO05D001403 5.4e-18 94.4 46 95.7
Zm00001eb323500 Zea mays HOM05D001519 ORTHO05D001403 9.2e-18 93.6 87 55.2
ECA246G0008 Erigeron canadensis HOM05D001519 ORTHO05D001403 2.0e-17 92.4 82 52.4
FAN25G2627 Fragaria x ananassa HOM05D001519 ORTHO05D001403 5.0e-16 87.8 72 59.7
FAN16G2590 Fragaria x ananassa HOM05D001519 ORTHO05D001403 7.3e-15 84.0 72 58.3
Lsat_1_v5_gn_1_112341 Lactuca sativa HOM05D001519 ORTHO05D001403 1.1e-10 70.1 82 45.1
Glyma.15G089500 Glycine max HOM05D001519 ORTHO05D001403 6.0e-09 64.3 39 66.7
Gorai.002G168500 Gossypium raimondii HOM05D001519 ORTHO05D001403 1.0e-08 63.5 38 63.2
Gohir.D05G154600 Gossypium hirsutum HOM05D001519 ORTHO05D001403 5.1e-08 61.2 37 64.9
SEGI_07752 Sequoiadendron giganteum HOM05D001519 ORTHO05D001403 1.1e-07 60.1 55 49.1
Gohir.D01G137100 Gossypium hirsutum HOM05D001519 ORTHO05D001403 1.5e-07 59.7 38 60.5
Gohir.D01G137600 Gossypium hirsutum HOM05D001519 ORTHO05D001403 1.5e-07 59.7 38 60.5
Gohir.D06G116050 Gossypium hirsutum HOM05D001519 ORTHO05D001403 1.9e-07 59.3 107 36.4
TAR369G1052 Trochodendron aralioides HOM05D001519 ORTHO05D001403 3.3e-07 58.5 38 65.8
TAR626G0346 Trochodendron aralioides HOM05D001519 ORTHO05D001403 3.3e-07 58.5 38 65.8
Gorai.010G133800 Gossypium raimondii HOM05D001519 ORTHO05D012409 7.3e-07 57.4 115 32.2
Lsat_1_v5_gn_8_17981 Lactuca sativa HOM05D001519 ORTHO05D001403 2.8e-06 55.5 38 57.9
TAR629G2619 Trochodendron aralioides HOM05D001519 ORTHO05D001403 3.6e-06 55.1 37 62.2
COL.COLO4_30294 Corchorus olitorius HOM05D001519 ORTHO05D001403 8.1e-06 53.9 100 32.0


User provided reference genes

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