Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RJKU2P Arachis hypogaea HOM05D002660 ORTHO05D003902 1.8e-237 825.5 405 100.0
arahy.Tifrunner.gnm1.ann1.64IP8W Arachis hypogaea HOM05D002660 ORTHO05D003902 4.2e-234 814.3 400 99.5
arahy.Tifrunner.gnm1.ann1.MHP2RT Arachis hypogaea HOM05D002660 ORTHO05D003902 1.5e-228 795.8 400 98.0
arahy.Tifrunner.gnm1.ann1.DD5JWP Arachis hypogaea HOM05D002660 ORTHO05D003902 7.0e-189 664.1 325 98.5
arahy.Tifrunner.gnm1.ann1.1F9GAV Arachis hypogaea HOM05D002660 ORTHO05D003902 5.5e-186 654.4 356 91.6
arahy.Tifrunner.gnm1.ann1.4WR8AK Arachis hypogaea HOM05D002660 ORTHO05D003902 2.2e-105 386.7 182 98.9
arahy.Tifrunner.gnm1.ann1.ET7F5Q Arachis hypogaea HOM05D002660 ORTHO05D003902 9.5e-45 185.3 300 42.3
RcHm_v2.0_MTg0498601 Rosa chinensis HOM05D002660 ORTHO05D003902 7.5e-42 175.6 164 54.9
arahy.Tifrunner.gnm1.ann1.HMG3T6 Arachis hypogaea HOM05D002660 ORTHO05D003902 2.2e-41 174.1 263 43.7
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.1e-32 145.2 256 39.1
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.1e-32 145.2 256 39.1
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.1e-32 145.2 256 39.1
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.1e-32 145.2 256 39.1
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 1.1e-32 145.2 256 39.1
Sopen05g012700 Solanum pennellii HOM05D002660 ORTHO05D000001 1.1e-32 145.2 266 36.1
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 1.2e-31 141.7 256 38.7
COL.COLO4_02507 Corchorus olitorius HOM05D002660 ORTHO05D003902 4.6e-31 139.8 222 42.3
Cpa.g.sc263.8 Carica papaya HOM05D002660 ORTHO05D003902 1.0e-30 138.7 131 53.4
SGA_v2.0_scaffold420G51340 Striga asiatica HOM05D002660 ORTHO05D003902 1.0e-30 138.7 317 33.1
SGA_v2.0_scaffold400G50856 Striga asiatica HOM05D002660 ORTHO05D003902 1.1e-29 135.2 129 51.2
arahy.Tifrunner.gnm1.ann1.8U7R2G Arachis hypogaea HOM05D002660 ORTHO05D003902 4.3e-29 133.3 128 57.8
CAN.G950.7 Capsicum annuum HOM05D002660 ORTHO05D003902 9.5e-29 132.1 284 35.2
SabraMtG0005500 Salix brachista HOM05D002660 ORTHO05D003902 2.4e-27 127.5 183 42.6
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 3.4e-26 123.6 169 44.4
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 1.7e-25 121.3 153 46.4
arahy.Tifrunner.gnm1.ann1.NU84BI Arachis hypogaea HOM05D000388 ORTHO05D000473 1.7e-25 121.3 153 46.4
arahy.Tifrunner.gnm1.ann1.BS65NI Arachis hypogaea HOM05D002660 ORTHO05D003902 7.1e-24 115.9 111 56.8
arahy.Tifrunner.gnm1.ann1.P7KX5B Arachis hypogaea HOM05D002660 ORTHO05D003902 7.1e-24 115.9 111 56.8
arahy.Tifrunner.gnm1.ann1.QMNG84 Arachis hypogaea HOM05D002660 ORTHO05D003902 7.1e-24 115.9 111 56.8
VMungo0985G0011 Vigna mungo HOM05D008696 ORTHO05D002807 1.2e-23 115.2 229 38.0
BraSC177t45771Z Brassica rapa HOM05D002660 ORTHO05D003902 6.0e-23 112.8 196 38.8
BraSC48t46265Z Brassica rapa HOM05D002660 ORTHO05D003902 6.0e-23 112.8 196 38.8
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 1.3e-22 111.7 125 48.8
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 1.3e-22 111.7 125 48.8
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 1.3e-22 111.7 125 48.8
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 1.3e-22 111.7 125 48.8
Cfa023009 Carpinus fangiana HOM05D002660 ORTHO05D013121 1.3e-22 111.7 164 41.5
Sed0005295 Sechium edule HOM05D002660 ORTHO05D003902 1.3e-22 111.7 221 37.1
SGA_v2.0_scaffold255G45438 Striga asiatica HOM05D002660 ORTHO05D003902 1.3e-22 111.7 111 49.5
BcaC05g27131 Brassica carinata HOM05D002660 ORTHO05D003902 1.7e-22 111.3 126 50.8
BolC6t36210H Brassica oleracea HOM05D002660 ORTHO05D003902 1.7e-22 111.3 196 37.8
COL.COLO4_04088 Corchorus olitorius HOM05D002660 ORTHO05D003902 3.9e-22 110.2 100 56.0
unitig_87.g28008 Utricularia gibba HOM05D002660 ORTHO05D003902 3.9e-22 110.2 215 37.2
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 5.1e-22 109.8 123 48.0
Solyc11g063530.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.1e-21 108.6 97 57.7
Ca_22176_v3 Cicer arietinum L. HOM05D001560 ORTHO05D003613 4.3e-21 106.7 210 37.1
Aa31csc1168G10 Aethionema arabicum HOM05D002660 ORTHO05D003902 1.2e-18 98.6 121 43.8
MBI05_g23322_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009798 1.5e-18 98.2 112 50.9
ATMG01410 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 9.9e-18 95.5 82 61.0
GSVIVG01029663001 Vitis vinifera HOM05D002660 ORTHO05D003902 1.3e-17 95.1 86 57.0
CAN.G85.19 Capsicum annuum HOM05D002660 ORTHO05D003902 6.4e-17 92.8 103 51.5
CsaV3_UNG207980 Cucumis sativus L. HOM05D002660 ORTHO05D003902 1.1e-16 92.0 280 29.6
Lj2P1228T81 Lonicera japonica HOM05D011380 ORTHO05D019448 4.2e-16 90.1 89 48.3
Potri.007G061741 Populus trichocarpa HOM05D023423 ORTHO05D010514 4.2e-16 90.1 208 34.1
Cpa.g.sc263.18 Carica papaya HOM05D002660 ORTHO05D003902 9.3e-16 89.0 161 39.1
MBI14_g44092_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.2e-15 88.6 114 44.7
MBI14_g38700_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 1.0e-14 85.5 98 49.0
arahy.Tifrunner.gnm1.ann1.PGW3V5 Arachis hypogaea HOM05D002660 ORTHO05D003902 2.3e-14 84.3 75 62.7
arahy.Tifrunner.gnm1.ann1.UMNW15 Arachis hypogaea HOM05D002660 ORTHO05D003902 2.3e-14 84.3 75 62.7
MBI14_g38260_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 6.6e-14 82.8 97 46.4
Sed0012925 Sechium edule HOM05D002660 ORTHO05D003902 6.6e-14 82.8 260 29.6
arahy.Tifrunner.gnm1.ann1.2INJ5A Arachis hypogaea HOM05D002660 ORTHO05D003902 1.5e-13 81.6 255 30.6
SabraMtG0003800 Salix brachista HOM05D023423 ORTHO05D010514 4.3e-13 80.1 206 32.5
Lj5g0008059 Lotus japonicus HOM05D002660 ORTHO05D003902 5.6e-13 79.7 69 56.5
Lj2A1234T113 Lonicera japonica HOM05D002660 ORTHO05D003902 1.3e-12 78.6 101 45.5
Glyma.08G300900 Glycine max HOM05D002660 ORTHO05D003902 4.8e-12 76.6 69 56.5
ATR0661G179 Amborella trichopoda HOM05D002660 ORTHO05D003902 6.2e-12 76.3 80 50.0
SHI41394 Sapria himalayana HOM05D002660 ORTHO05D003902 8.1e-12 75.9 95 41.1
Sopen11g018230 Solanum pennellii HOM05D002660 ORTHO05D003902 5.3e-11 73.2 101 43.6
SGA_v2.0_scaffold507G52551 Striga asiatica HOM05D002660 ORTHO05D003902 6.9e-11 72.8 72 51.4
ATR0575G001 Amborella trichopoda HOM05D002660 ORTHO05D003902 2.6e-10 70.9 49 65.3
SHI34651 Sapria himalayana HOM05D002660 ORTHO05D003902 3.4e-10 70.5 67 59.7
arahy.Tifrunner.gnm1.ann1.M5G7Z1 Arachis hypogaea HOM05D008696 ORTHO05D010514 7.6e-10 69.3 152 33.6
arahy.Tifrunner.gnm1.ann1.MXAG91 Arachis hypogaea HOM05D008696 ORTHO05D010514 7.6e-10 69.3 152 33.6
MBI05_g05343_MAGBIO Magnolia biondii HOM05D000445 ORTHO05D000314 9.9e-10 68.9 111 40.5
SGA_v2.0_scaffold479G52276 Striga asiatica HOM05D002660 ORTHO05D003902 9.9e-10 68.9 63 57.1
ATMG01110 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 1.3e-09 68.6 85 45.9
SGA_v2.0_scaffold400G50852 Striga asiatica HOM05D000388 ORTHO05D000473 1.3e-09 68.6 116 38.8
CARHR283370 Cardamine hirsuta HOM05D002660 ORTHO05D003902 1.7e-09 68.2 85 44.7
Sed0016072 Sechium edule HOM05D002660 ORTHO05D003902 1.7e-09 68.2 52 55.8
Nn1g10106 Nelumbo nucifera HOM05D002660 ORTHO05D003902 3.8e-09 67.0 67 52.2
Nn1g10197 Nelumbo nucifera HOM05D002660 ORTHO05D003902 3.8e-09 67.0 67 52.2
arahy.Tifrunner.gnm1.ann1.9V24TL Arachis hypogaea HOM05D008696 ORTHO05D010514 4.9e-09 66.6 156 32.1
arahy.Tifrunner.gnm1.ann1.T3VZS7 Arachis hypogaea HOM05D008696 ORTHO05D010514 4.9e-09 66.6 156 32.1
arahy.Tifrunner.gnm1.ann1.D6L4V6 Arachis hypogaea HOM05D008696 ORTHO05D010514 6.4e-09 66.2 156 31.4
CAN.G1167.16 Capsicum annuum HOM05D002660 ORTHO05D003902 1.9e-08 64.7 89 46.1
Psat1g132480 Pisum sativum HOM05D030242 ORTHO05D030475 1.9e-08 64.7 82 43.9
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 1.9e-08 64.7 71 46.5
arahy.Tifrunner.gnm1.ann1.Z6EYTT Arachis hypogaea HOM05D008696 ORTHO05D010514 2.4e-08 64.3 156 32.1
Lalb_Chr00c24g0406811 Lupinus albus HOM05D002660 ORTHO05D003902 2.4e-08 64.3 86 46.5
Solyc03g063470.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 4.2e-08 63.5 81 46.9
PGSC0003DMG400001137 Solanum tuberosum HOM05D002660 ORTHO05D003902 5.4e-08 63.2 89 44.9
CAN.G1109.11 Capsicum annuum HOM05D002660 ORTHO05D003902 7.1e-08 62.8 89 44.9
Solyc00g142170.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 7.1e-08 62.8 92 43.5
Solyc00g500255.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 7.1e-08 62.8 92 43.5
Gorai.001G160300 Gossypium raimondii HOM05D014842 ORTHO05D010514 1.2e-07 62.0 73 42.5
Lalb_Chr00c24g0406851 Lupinus albus HOM05D002660 ORTHO05D003902 1.2e-07 62.0 51 58.8
Lalb_Chr00c29g0407851 Lupinus albus HOM05D043230 ORTHO05D038884 1.2e-07 62.0 71 39.4
CAN.G72.10 Capsicum annuum HOM05D002660 ORTHO05D003902 1.6e-07 61.6 81 45.7
SGA_v2.0_scaffold420G51422 Striga asiatica HOM05D002660 ORTHO05D019448 2.1e-07 61.2 76 42.1
arahy.Tifrunner.gnm1.ann1.FFDS4S Arachis hypogaea HOM05D002660 ORTHO05D003902 4.6e-07 60.1 95 44.2
Gohir.A06G098104 Gossypium hirsutum HOM05D002660 ORTHO05D003902 7.9e-07 59.3 83 44.6
CAN.G505.3 Capsicum annuum HOM05D002660 ORTHO05D003902 1.0e-06 58.9 89 40.4
Lj2P1229T103 Lonicera japonica HOM05D002660 ORTHO05D003902 1.3e-06 58.5 50 56.0
Sed0020463 Sechium edule HOM05D002660 ORTHO05D003902 1.3e-06 58.5 80 42.5
Gohir.A06G098102 Gossypium hirsutum HOM05D008696 ORTHO05D010514 1.8e-06 58.2 72 41.7
Lsat_1_v5_gn_5_13340 Lactuca sativa HOM05D002660 ORTHO05D003902 1.8e-06 58.2 47 57.4
Lsat_1_v5_gn_5_172580 Lactuca sativa HOM05D002660 ORTHO05D003902 1.8e-06 58.2 47 57.4
Lsat_1_v5_gn_8_124640 Lactuca sativa HOM05D002660 ORTHO05D003902 1.8e-06 58.2 47 57.4
Lsat_1_v5_gn_8_93860 Lactuca sativa HOM05D002660 ORTHO05D003902 1.8e-06 58.2 47 57.4
Sopen05g012710 Solanum pennellii HOM05D008696 ORTHO05D010514 1.8e-06 58.2 72 41.7
PGSC0003DMG400009608 Solanum tuberosum HOM05D014842 ORTHO05D010514 1.8e-06 58.2 72 41.7
AT2G07749 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 5.1e-06 56.6 79 40.5
CAN.G1.6 Capsicum annuum HOM05D002660 ORTHO05D003902 5.1e-06 56.6 78 43.6


User provided reference genes

Program Settings