Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RJ91AH Arachis hypogaea HOM05D005878 ORTHO05D007433 5.3e-117 424.5 231 100.0
arahy.Tifrunner.gnm1.ann1.7Y8XE1 Arachis hypogaea HOM05D005878 ORTHO05D007433 1.2e-113 413.3 231 97.8
Lalb_Chr01g0007451 Lupinus albus HOM05D005878 ORTHO05D007433 7.2e-82 307.8 228 78.9
QL04p021553 Quercus lobata HOM05D005878 ORTHO05D007433 4.3e-74 282.0 234 70.5
Glyma.06G309000 Glycine max HOM05D005878 ORTHO05D007433 8.0e-73 277.7 204 77.0
Medtr3g013460 Medicago truncatula HOM05D005878 ORTHO05D007433 4.0e-72 275.4 275 63.3
VMungo1080G0593 Vigna mungo HOM05D005878 ORTHO05D007433 3.7e-70 268.9 207 73.4
Phvul.005G018300 Phaseolus vulgaris HOM05D005878 ORTHO05D007433 8.3e-70 267.7 232 67.7
Ca_14245_v3 Cicer arietinum L. HOM05D005878 ORTHO05D007433 1.1e-69 267.3 205 76.6
Lj3g0011478 Lotus japonicus HOM05D005878 ORTHO05D007433 3.2e-69 265.8 220 70.5
TAR633G2731 Trochodendron aralioides HOM05D005878 ORTHO05D007433 7.0e-69 264.6 227 68.7
Glyma.04G132400 Glycine max HOM05D005878 ORTHO05D007433 1.2e-68 263.8 212 73.1
CiPaw.14G010200 Carya illinoinensis HOM05D005878 ORTHO05D007433 4.6e-68 261.9 220 69.5
COL.COLO4_05616 Corchorus olitorius HOM05D005878 ORTHO05D007433 1.0e-67 260.8 234 66.2
Gorai.012G019700 Gossypium raimondii HOM05D005878 ORTHO05D007433 2.3e-67 259.6 232 64.7
Nitab4.5_0002838g0030 Nicotiana tabacum HOM05D005878 ORTHO05D007433 3.0e-67 259.2 245 62.4
CANSAT01G2833 Cannabis sativa HOM05D005878 ORTHO05D007433 3.9e-67 258.8 237 65.8
Gohir.A05G398900 Gossypium hirsutum HOM05D005878 ORTHO05D007433 5.0e-67 258.5 232 63.4
Gohir.D04G017000 Gossypium hirsutum HOM05D005878 ORTHO05D007433 1.5e-66 256.9 232 63.8
Duzib114G0830 Durio zibethinus HOM05D005878 ORTHO05D007433 1.9e-66 256.5 231 65.4
Prupe.2G044200 Prunus persica HOM05D005878 ORTHO05D007433 1.9e-66 256.5 220 70.9
Ciclev10002378m.g Citrus clementina HOM05D005878 ORTHO05D007433 2.5e-66 256.1 229 64.2
Nitab4.5_0004168g0090 Nicotiana tabacum HOM05D005878 ORTHO05D007433 3.3e-66 255.8 243 61.3
Peaxi162Scf00220g00235 Petunia axillaris HOM05D005878 ORTHO05D007433 3.3e-66 255.8 201 70.1
Thecc.10G140600 Theobroma cacao HOM05D005878 ORTHO05D007433 5.6e-66 255.0 234 63.7
MBI03_g46805_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 2.1e-65 253.1 227 65.6
MD07G1043600 Malus domestica HOM05D005878 ORTHO05D007433 2.1e-65 253.1 221 69.7
Manes.11G008200 Manihot esculenta HOM05D005878 ORTHO05D007433 2.1e-65 253.1 210 70.0
FAN01G0732 Fragaria x ananassa HOM05D005878 ORTHO05D007433 3.6e-65 252.3 234 66.2
MBI03_g45113_MAGBIO Magnolia biondii HOM05D005878 ORTHO05D007433 3.6e-65 252.3 227 65.6
RcHm_v2.0_Chr1g0327631 Rosa chinensis HOM05D005878 ORTHO05D007433 3.6e-65 252.3 228 67.5
Nn7g36933 Nelumbo nucifera HOM05D005878 ORTHO05D007433 4.7e-65 251.9 230 67.0
Hund13399 Selenicereus undatus HOM05D005878 ORTHO05D007433 4.7e-65 251.9 225 67.6
Cfa010961 Carpinus fangiana HOM05D005878 ORTHO05D007433 6.2e-65 251.5 230 66.1
TAR636G2836 Trochodendron aralioides HOM05D005878 ORTHO05D007433 1.1e-64 250.8 221 67.0
TWI38G1150 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 1.4e-64 250.4 210 68.6
MD00G1152600 Malus domestica HOM05D005878 ORTHO05D007433 2.3e-64 249.6 228 66.7
PGR031G0581 Punica granatum HOM05D005878 ORTHO05D007433 2.3e-64 249.6 234 63.2
TWI15G0528 Tripterygium wilfordii HOM05D005878 ORTHO05D007433 4.0e-64 248.8 188 72.3
Aqoxy2G00498 Aquilegia oxysepala HOM05D005878 ORTHO05D007433 5.2e-64 248.4 214 65.4
Dinv32002 Davidia involucrata HOM05D005878 ORTHO05D007433 5.2e-64 248.4 216 68.1
Dinv02557 Davidia involucrata HOM05D005878 ORTHO05D007433 8.9e-64 247.7 228 62.7
FAN06G2676 Fragaria x ananassa HOM05D005878 ORTHO05D007433 2.6e-63 246.1 237 65.0
CsaV3_5G036960 Cucumis sativus L. HOM05D005878 ORTHO05D007433 4.4e-63 245.4 219 62.1
Eucgr.G03205 Eucalyptus grandis HOM05D005878 ORTHO05D007433 7.5e-63 244.6 229 64.6
Sed0004070 Sechium edule HOM05D005878 ORTHO05D007433 9.8e-63 244.2 219 64.4
THA.LOC104799332 Tarenaya hassleriana HOM05D005878 ORTHO05D007433 9.8e-63 244.2 228 63.6
EL10Ac2g02748 Beta vulgaris HOM05D005878 ORTHO05D007433 1.3e-62 243.8 192 69.8
FvH4_7g03940 Fragaria vesca HOM05D005878 ORTHO05D007433 1.3e-62 243.8 223 67.3
ClCG05G027000 Citrullus lanatus HOM05D005878 ORTHO05D007433 2.9e-62 242.7 216 64.4
PGSC0003DMG400003288 Solanum tuberosum HOM05D005878 ORTHO05D007433 8.3e-62 241.1 236 62.3
MELO3C012494.2 Cucumis melo HOM05D005878 ORTHO05D007433 1.9e-61 240.0 214 65.0
Thhalv10014567m.g Eutrema salsugineum HOM05D005878 ORTHO05D007433 1.9e-61 240.0 180 74.4
Haze_02979 Corylus avellana HOM05D005878 ORTHO05D007433 3.2e-61 239.2 237 62.9
DCAR_006594 Daucus carota HOM05D005878 ORTHO05D007433 3.2e-61 239.2 235 60.9
Solyc01g096660.3 Solanum lycopersicum HOM05D005878 ORTHO05D007433 4.1e-61 238.8 233 63.1
ATR1136G020 Amborella trichopoda HOM05D005878 ORTHO05D007433 5.4e-61 238.4 191 68.6
C02p02970 Brassica napus HOM05D005878 ORTHO05D007433 5.4e-61 238.4 222 62.6
Sopen01g040380 Solanum pennellii HOM05D005878 ORTHO05D007433 1.2e-60 237.3 233 62.2
Actinidia01690 Actinidia chinensis HOM05D005878 ORTHO05D007433 2.7e-60 236.1 209 65.6
Sp6g35860 Schrenkiella parvula HOM05D005878 ORTHO05D007433 2.7e-60 236.1 182 70.9
AL6G17170 Arabidopsis lyrata HOM05D005878 ORTHO05D007433 3.5e-60 235.7 192 67.2
BcaB05g21633 Brassica carinata HOM05D005878 ORTHO05D007433 3.5e-60 235.7 197 70.1
BcaB05g21635 Brassica carinata HOM05D005878 ORTHO05D007433 4.6e-60 235.3 200 66.0
BcaC03g13174 Brassica carinata HOM05D005878 ORTHO05D007433 4.6e-60 235.3 200 66.0
BolC2t06258H Brassica oleracea HOM05D005878 ORTHO05D007433 4.6e-60 235.3 200 66.0
PSO339G1146 Papaver somniferum HOM05D005878 ORTHO05D007433 6.0e-60 235.0 214 63.1
Migut.B01182 Erythranthe guttata HOM05D005878 ORTHO05D007433 7.8e-60 234.6 233 58.8
SalBow2G0433 Salvia bowleyana HOM05D005878 ORTHO05D007433 7.8e-60 234.6 209 62.7
BcaNung04204 Brassica carinata HOM05D005878 ORTHO05D007433 1.0e-59 234.2 214 62.6
C09p69150 Brassica napus HOM05D005878 ORTHO05D007433 1.0e-59 234.2 214 62.6
BolC9t59659H Brassica oleracea HOM05D005878 ORTHO05D007433 1.3e-59 233.8 214 62.6
Actinidia01520 Actinidia chinensis HOM05D005878 ORTHO05D007433 2.3e-59 233.0 212 64.6
SalBow2G2419 Salvia bowleyana HOM05D005878 ORTHO05D007433 3.0e-59 232.6 209 62.2
CSS0046372 Camellia sinensis var. sinensis HOM05D005878 ORTHO05D007433 3.9e-59 232.3 184 69.6
PSO384G4469 Papaver somniferum HOM05D005878 ORTHO05D007433 5.1e-59 231.9 214 63.1
Rhsim10G0180100 Rhododendron simsii HOM05D005878 ORTHO05D007433 5.1e-59 231.9 193 69.9
BcaC06g32524 Brassica carinata HOM05D005878 ORTHO05D007433 6.6e-59 231.5 223 62.3
A10p28810 Brassica napus HOM05D005878 ORTHO05D007433 8.6e-59 231.1 225 60.4
Cc00_g09800 Coffea canephora HOM05D005878 ORTHO05D007433 1.1e-58 230.7 230 62.2
Carub.0006s0594 Capsella rubella HOM05D005878 ORTHO05D007433 1.5e-58 230.3 171 74.3
BraA10t44928Z Brassica rapa HOM05D005878 ORTHO05D007433 2.5e-58 229.6 225 60.0
HPP92_016121 Vanilla planifolia HOM05D005878 ORTHO05D007433 5.6e-58 228.4 239 57.3
CARHR206130 Cardamine hirsuta HOM05D005878 ORTHO05D007433 9.5e-58 227.6 176 72.7
AUR62032609 Chenopodium quinoa HOM05D005878 ORTHO05D007433 1.2e-57 227.3 185 68.1
AT5G07020 Arabidopsis thaliana HOM05D005878 ORTHO05D007433 1.6e-57 226.9 192 65.6
ECA248G2695 Erigeron canadensis HOM05D005878 ORTHO05D007433 3.6e-57 225.7 220 60.5
Oeu006783.1 Olea europaea HOM05D005878 ORTHO05D007433 6.2e-57 224.9 223 58.7
Lsat_1_v5_gn_9_74980 Lactuca sativa HOM05D005878 ORTHO05D007433 1.1e-56 224.2 240 57.1
Sc14g0005230 Simmondsia chinensis HOM05D005878 ORTHO05D007433 1.1e-56 224.2 235 63.4
MSTRG.16973 Avicennia marina HOM05D005878 ORTHO05D007433 5.2e-56 221.9 217 59.9
GSVIVG01036595001 Vitis vinifera HOM05D005878 ORTHO05D007433 1.2e-55 220.7 220 60.0
Potri.003G192800 Populus trichocarpa HOM05D005878 ORTHO05D007433 5.8e-55 218.4 216 62.0
BraA02t04902Z Brassica rapa HOM05D005878 ORTHO05D007433 2.2e-54 216.5 240 56.2
HanXRQChr11g0341301 Helianthus annuus HOM05D005878 ORTHO05D007433 3.7e-54 215.7 212 60.4
vmacro20585 Vaccinium macrocarpon HOM05D005878 ORTHO05D007433 1.6e-52 210.3 252 55.2
Aa31sc25G160 Aethionema arabicum HOM05D005878 ORTHO05D007433 3.5e-52 209.1 134 79.1
Psat5g223120 Pisum sativum HOM05D005878 ORTHO05D007433 4.6e-52 208.8 206 63.1
CDE02G0435 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 6.0e-52 208.4 211 58.3
FAN03G0529 Fragaria x ananassa HOM05D005878 ORTHO05D007433 2.3e-51 206.5 206 63.1
CDE08G0208 Ceratophyllum demersum HOM05D005878 ORTHO05D007433 3.9e-51 205.7 229 56.3
unitig_22.g5332 Utricularia gibba HOM05D005878 ORTHO05D007433 5.1e-51 205.3 235 55.3
Atru.chr12.1246 Acer truncatum HOM05D005878 ORTHO05D007433 7.3e-50 201.4 213 62.4
Zm00001eb182020 Zea mays HOM05D005878 ORTHO05D007433 2.8e-49 199.5 189 60.3
AUR62001069 Chenopodium quinoa HOM05D005878 ORTHO05D007433 2.4e-48 196.4 129 79.8
TPR.G1450 Trifolium pratense HOM05D005878 ORTHO05D007433 2.4e-48 196.4 140 77.9
Hma1.2p1_0233F.1_g098360 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 8.9e-48 194.5 127 75.6
Cpa.g.sc188.4 Carica papaya HOM05D005878 ORTHO05D007433 1.2e-47 194.1 121 82.6
Os02g0556800 Oryza sativa ssp. japonica HOM05D005878 ORTHO05D007433 2.0e-47 193.4 164 64.6
Lj9A656G41 Lonicera japonica HOM05D005878 ORTHO05D007433 2.4e-45 186.4 150 69.3
SGA_v2.0_scaffold430G51553 Striga asiatica HOM05D005878 ORTHO05D007433 4.2e-45 185.7 130 73.8
SEGI_13955 Sequoiadendron giganteum HOM05D005878 ORTHO05D007433 5.1e-43 178.7 189 56.6
AagrBONN_evm.TU.Sc2ySwM_117.1283 Anthoceros agrestis HOM05D005878 ORTHO05D007433 1.6e-41 173.7 175 56.6
AagrBONN_evm.TU.Sc2ySwM_117.450 Anthoceros agrestis HOM05D005878 ORTHO05D007433 2.1e-41 173.3 190 54.2
Mapoly0116s0014 Marchantia polymorpha HOM05D005878 ORTHO05D007433 6.9e-40 168.3 189 54.0
A03p56860 Brassica napus HOM05D005878 ORTHO05D007433 9.0e-40 167.9 130 71.5
Hma1.2p1_0233F.1_g098370 Hydrangea macrophylla HOM05D005878 ORTHO05D007433 9.0e-40 167.9 146 64.4
Pp3c8_5370 Physcomitrium patens HOM05D005878 ORTHO05D007433 5.8e-39 165.2 186 51.6
Pp3c3_32790 Physcomitrium patens HOM05D005878 ORTHO05D007433 2.4e-37 159.8 153 56.2
SMO143G0125 Selaginella moellendorffii HOM05D005878 ORTHO05D007433 7.1e-37 158.3 215 49.3
Eucgr.L03611 Eucalyptus grandis HOM05D005878 ORTHO05D007433 3.5e-28 129.4 110 65.5
AUR62031722 Chenopodium quinoa HOM05D005878 ORTHO05D007433 1.8e-27 127.1 162 50.6
BcaC03g13176 Brassica carinata HOM05D005878 ORTHO05D007433 1.5e-26 124.0 73 79.5
TAR628G0990 Trochodendron aralioides HOM05D005878 ORTHO05D007433 1.5e-26 124.0 164 51.2
Atru.chr2.3038 Acer truncatum HOM05D005878 ORTHO05D007433 2.5e-21 106.7 100 61.0
CBR_g50344 Chara braunii HOM05D005878 ORTHO05D007433 1.4e-16 90.9 194 37.6
Atru.chr7.1915 Acer truncatum HOM05D005878 ORTHO05D007433 4.0e-16 89.4 112 48.2
Atru.chr3.2623 Acer truncatum HOM05D005878 ORTHO05D007433 2.0e-15 87.0 83 60.2
Potri.001G032200 Populus trichocarpa HOM05D005878 ORTHO05D007433 1.5e-10 70.9 230 34.3
PGSC0003DMG400040390 Solanum tuberosum HOM05D005878 ORTHO05D007433 3.1e-08 63.2 45 68.9
C07p55210 Brassica napus HOM05D005878 ORTHO05D033170 7.7e-07 58.5 122 45.9
BolC7t45992H Brassica oleracea HOM05D005878 ORTHO05D033170 1.0e-06 58.2 52 75.0


User provided reference genes

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