Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RJ6BPE Arachis hypogaea HOM05D004690 ORTHO05D005527 9.7e-142 506.9 275 100.0
arahy.Tifrunner.gnm1.ann1.VFXC0H Arachis hypogaea HOM05D004690 ORTHO05D005527 6.3e-141 504.2 275 99.3
Phvul.003G154700 Phaseolus vulgaris HOM05D004690 ORTHO05D005527 1.8e-100 369.8 275 73.8
VMungo1215G2193 Vigna mungo HOM05D004690 ORTHO05D005527 2.0e-99 366.3 279 72.8
Glyma.02G205700 Glycine max HOM05D004690 ORTHO05D005527 7.5e-94 347.8 279 73.8
Glyma.17G072300 Glycine max HOM05D004690 ORTHO05D005527 6.4e-93 344.7 278 71.6
Potri.018G104000 Populus trichocarpa HOM05D004690 ORTHO05D005527 6.4e-93 344.7 284 69.4
Manes.14G143400 Manihot esculenta HOM05D004690 ORTHO05D005527 1.4e-92 343.6 281 70.1
Lj4g0007308 Lotus japonicus HOM05D004690 ORTHO05D005527 9.2e-92 340.9 277 72.6
Nn2g12436 Nelumbo nucifera HOM05D004690 ORTHO05D005527 9.2e-92 340.9 280 68.6
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 6.6e-90 334.7 280 71.1
Ciclev10009165m.g Citrus clementina HOM05D004690 ORTHO05D005527 1.5e-89 333.6 280 67.1
TAR383G0346 Trochodendron aralioides HOM05D004690 ORTHO05D005527 1.9e-89 333.2 281 69.8
GSVIVG01023642001 Vitis vinifera HOM05D004690 ORTHO05D005527 7.3e-89 331.3 279 68.8
Cfa020803 Carpinus fangiana HOM05D004690 ORTHO05D005527 2.8e-88 329.3 284 69.4
TWI63G1092 Tripterygium wilfordii HOM05D004690 ORTHO05D005527 6.2e-88 328.2 282 66.7
CSS0047585 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 1.1e-87 327.4 288 66.3
CiPaw.16G107700 Carya illinoinensis HOM05D004690 ORTHO05D005527 4.0e-87 325.5 278 70.5
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 5.2e-87 325.1 277 67.1
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 8.9e-87 324.3 281 67.6
CANSAT11G0185 Cannabis sativa HOM05D004690 ORTHO05D005527 1.2e-86 323.9 289 66.4
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 1.2e-86 323.9 281 67.6
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 1.2e-86 323.9 281 67.6
CiPaw.15G165900 Carya illinoinensis HOM05D004690 ORTHO05D005527 9.8e-86 320.9 254 70.9
CSS0044573 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 1.7e-85 320.1 283 66.4
Cpa.g.sc46.177 Carica papaya HOM05D004690 ORTHO05D005527 2.2e-85 319.7 283 68.6
Lalb_Chr12g0198781 Lupinus albus HOM05D004690 ORTHO05D005527 3.7e-85 318.9 279 67.0
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 5.4e-84 315.1 259 69.5
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 1.6e-83 313.5 270 65.9
PGR102G1430 Punica granatum HOM05D004690 ORTHO05D005527 2.3e-82 309.7 260 69.6
Hma1.2p1_0028F.1_g017650 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 3.0e-82 309.3 284 63.4
Sed0017216 Sechium edule HOM05D004690 ORTHO05D005527 3.0e-82 309.3 268 66.8
Prupe.7G265300 Prunus persica HOM05D004690 ORTHO05D005527 3.9e-82 308.9 283 62.9
Eucgr.C02505 Eucalyptus grandis HOM05D004690 ORTHO05D005527 5.1e-82 308.5 263 68.8
MSTRG.10705 Avicennia marina HOM05D004690 ORTHO05D005527 3.3e-81 305.8 275 64.7
Medtr4g130530 Medicago truncatula HOM05D004690 ORTHO05D005527 2.8e-80 302.8 280 64.6
Solyc07g005830.3 Solanum lycopersicum HOM05D004690 ORTHO05D005527 4.7e-80 302.0 279 63.4
Sopen07g001930 Solanum pennellii HOM05D004690 ORTHO05D005527 4.7e-80 302.0 279 63.4
Dinv42835 Davidia involucrata HOM05D004690 ORTHO05D005527 6.2e-80 301.6 285 66.0
Dinv43264 Davidia involucrata HOM05D004690 ORTHO05D005527 6.2e-80 301.6 285 66.0
PGSC0003DMG400011147 Solanum tuberosum HOM05D004690 ORTHO05D005527 6.8e-79 298.1 279 63.4
Haze_19160 Corylus avellana HOM05D004690 ORTHO05D005527 1.7e-77 293.5 318 59.4
Psat7g006440 Pisum sativum HOM05D004690 ORTHO05D005527 3.7e-77 292.4 280 63.6
FvH4_1g00690 Fragaria vesca HOM05D004690 ORTHO05D005527 8.4e-77 291.2 279 60.6
MD02G1005700 Malus domestica HOM05D004690 ORTHO05D005527 1.1e-76 290.8 287 62.0
Atru.chr7.16 Acer truncatum HOM05D004690 ORTHO05D005527 7.1e-76 288.1 254 66.9
unitig_899.g15465 Utricularia gibba HOM05D004690 ORTHO05D005527 9.2e-76 287.7 227 73.1
RcHm_v2.0_Chr2g0085411 Rosa chinensis HOM05D004690 ORTHO05D005527 1.6e-75 287.0 283 59.7
FAN26G1928 Fragaria x ananassa HOM05D004690 ORTHO05D005527 2.1e-75 286.6 281 59.8
BcaNung02747 Brassica carinata HOM05D004690 ORTHO05D005527 4.6e-75 285.4 283 60.8
C07p58160 Brassica napus HOM05D004690 ORTHO05D005527 4.6e-75 285.4 283 60.8
BolC7t46275H Brassica oleracea HOM05D004690 ORTHO05D005527 4.6e-75 285.4 283 60.8
HanXRQChr10g0307591 Helianthus annuus HOM05D004690 ORTHO05D005527 6.0e-75 285.0 282 63.8
Migut.K00308 Erythranthe guttata HOM05D004690 ORTHO05D005527 1.7e-74 283.5 280 59.6
Glyma.04G154000 Glycine max HOM05D004690 ORTHO05D005527 6.6e-74 281.6 204 72.5
Sabra18G0089400 Salix brachista HOM05D004690 ORTHO05D005527 6.6e-74 281.6 284 60.2
ATR0019G027 Amborella trichopoda HOM05D004690 ORTHO05D005527 2.5e-73 279.6 219 72.6
Potri.006G182000 Populus trichocarpa HOM05D004690 ORTHO05D005527 5.6e-73 278.5 227 68.7
Cc06_g14700 Coffea canephora HOM05D004690 ORTHO05D005527 1.2e-72 277.3 195 78.5
Sp7g28600 Schrenkiella parvula HOM05D004690 ORTHO05D005527 3.6e-72 275.8 288 59.0
CARHR118290 Cardamine hirsuta HOM05D004690 ORTHO05D005527 6.2e-72 275.0 286 58.0
Lsat_1_v5_gn_8_63881 Lactuca sativa HOM05D004690 ORTHO05D005527 8.1e-72 274.6 220 69.1
CARHR238570 Cardamine hirsuta HOM05D004690 ORTHO05D005527 1.4e-71 273.9 252 63.9
Aqoxy7G03362 Aquilegia oxysepala HOM05D004690 ORTHO05D005527 1.8e-71 273.5 285 58.9
MD15G1150400 Malus domestica HOM05D004690 ORTHO05D005527 3.1e-71 272.7 223 66.8
Peaxi162Scf00401g00330 Petunia axillaris HOM05D004690 ORTHO05D005527 4.0e-71 272.3 281 61.2
HanXRQChr05g0138951 Helianthus annuus HOM05D004690 ORTHO05D005527 5.2e-71 271.9 223 68.6
Lsat_1_v5_gn_5_89380 Lactuca sativa HOM05D004690 ORTHO05D005527 1.5e-70 270.4 278 56.5
A03p60250 Brassica napus HOM05D004690 ORTHO05D005527 2.6e-70 269.6 253 63.6
BraA03t15065Z Brassica rapa HOM05D004690 ORTHO05D005527 2.6e-70 269.6 283 60.4
ECA236G1766 Erigeron canadensis HOM05D004690 ORTHO05D005527 3.4e-70 269.2 220 68.2
AL4G14110 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 4.4e-70 268.9 287 56.4
AT4G30690 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 4.4e-70 268.9 279 59.1
BcaC02g08501 Brassica carinata HOM05D004690 ORTHO05D005527 4.4e-70 268.9 277 59.2
AT2G24060 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 5.8e-70 268.5 276 57.6
Thhalv10000269m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 1.3e-69 267.3 282 59.2
Thhalv10025935m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 2.2e-69 266.5 256 63.3
SGA_v2.0_scaffold63G21785 Striga asiatica HOM05D004690 ORTHO05D005527 2.2e-69 266.5 291 54.6
PSO111G0014 Papaver somniferum HOM05D004690 ORTHO05D005527 2.9e-69 266.2 278 57.9
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 2.9e-69 266.2 284 57.0
Carub.0004s0323 Capsella rubella HOM05D004690 ORTHO05D005527 4.9e-69 265.4 285 59.3
PSO782G2525 Papaver somniferum HOM05D004690 ORTHO05D005527 6.4e-69 265.0 278 57.6
SalBow1G0331 Salvia bowleyana HOM05D004690 ORTHO05D005527 6.4e-69 265.0 279 57.3
ClCG02G014380 Citrullus lanatus HOM05D004690 ORTHO05D005527 8.4e-69 264.6 255 61.6
BolC4t26921H Brassica oleracea HOM05D004690 ORTHO05D005527 1.1e-68 264.2 278 59.0
C04p53650 Brassica napus HOM05D004690 ORTHO05D005527 1.9e-68 263.5 278 58.6
Ah.09g228780 Amaranthus hybridus HOM05D004690 ORTHO05D005527 2.4e-68 263.1 294 58.5
BcaB06g27964 Brassica carinata HOM05D004690 ORTHO05D005527 2.4e-68 263.1 276 58.7
ECA234G3490 Erigeron canadensis HOM05D004690 ORTHO05D005527 2.4e-68 263.1 272 58.1
MELO3C004125.2 Cucumis melo HOM05D004690 ORTHO05D005527 3.2e-68 262.7 257 61.1
Sp4g02970 Schrenkiella parvula HOM05D004690 ORTHO05D005527 3.2e-68 262.7 288 57.3
A04p18380 Brassica napus HOM05D004690 ORTHO05D005527 5.4e-68 261.9 278 58.6
QL02p093831 Quercus lobata HOM05D004690 ORTHO05D005527 1.2e-67 260.8 234 67.9
Hma1.2p1_0222F.1_g093770 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 1.6e-67 260.4 299 54.5
FAN28G2863 Fragaria x ananassa HOM05D004690 ORTHO05D005527 2.1e-67 260.0 279 56.6
Sc18g0003050 Simmondsia chinensis HOM05D004690 ORTHO05D005527 2.7e-67 259.6 295 58.0
BraA04t17449Z Brassica rapa HOM05D004690 ORTHO05D005527 1.0e-66 257.7 281 57.7
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 1.0e-66 257.7 284 54.6
BcaNung04824 Brassica carinata HOM05D004690 ORTHO05D005527 2.3e-66 256.5 181 75.1
Aa31LG7G12770 Aethionema arabicum HOM05D004690 ORTHO05D005527 3.0e-66 256.1 293 55.3
CDE02G3377 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 1.5e-65 253.8 222 65.8
FAN23G2407 Fragaria x ananassa HOM05D004690 ORTHO05D005527 2.5e-65 253.1 277 55.2
FAN23G2925 Fragaria x ananassa HOM05D004690 ORTHO05D005527 2.5e-65 253.1 277 55.2
Nitab4.5_0002611g0030 Nicotiana tabacum HOM05D004690 ORTHO05D005527 5.6e-65 251.9 171 77.2
AL7G21430 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 2.8e-64 249.6 286 55.6
CAN.G160.27 Capsicum annuum HOM05D004690 ORTHO05D005527 3.1e-63 246.1 171 78.9
Oeu054265.1 Olea europaea HOM05D004690 ORTHO05D005527 4.0e-63 245.7 151 83.4
vmacro16787 Vaccinium macrocarpon HOM05D004690 ORTHO05D005527 4.0e-63 245.7 341 48.1
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 7.6e-62 241.5 266 54.5
EL10Ac8g18927 Beta vulgaris HOM05D004690 ORTHO05D005527 7.6e-62 241.5 274 57.7
Hund08935 Selenicereus undatus HOM05D004690 ORTHO05D005527 6.4e-61 238.4 288 55.2
Lj7C462G3 Lonicera japonica HOM05D000062 ORTHO05D000043 1.1e-60 237.7 218 62.4
Rhsim01G0027300 Rhododendron simsii HOM05D004690 ORTHO05D005527 1.4e-60 237.3 295 51.9
MBI15_g27186_MAGBIO Magnolia biondii HOM05D004690 ORTHO05D005527 3.3e-57 226.1 284 52.8
HPP92_018341 Vanilla planifolia HOM05D004690 ORTHO05D005527 3.3e-57 226.1 217 58.1
Zm00001eb257720 Zea mays HOM05D004690 ORTHO05D005527 3.6e-56 222.6 200 60.0
CDE05G2888 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 5.3e-55 218.8 187 63.6
Duzib150G0069 Durio zibethinus HOM05D004690 ORTHO05D005527 7.6e-54 214.9 280 51.8
Os02g0794400 Oryza sativa ssp. japonica HOM05D004690 ORTHO05D005527 2.4e-52 209.9 188 61.2
Nn8g39977 Nelumbo nucifera HOM05D004690 ORTHO05D005527 3.0e-50 203.0 136 74.3
AUR62028351 Chenopodium quinoa HOM05D004690 ORTHO05D005527 1.5e-49 200.7 264 48.9
AUR62025348 Chenopodium quinoa HOM05D004690 ORTHO05D005527 4.3e-49 199.1 265 48.3
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 9.6e-49 198.0 182 56.0
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 7.6e-46 188.3 222 49.5
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 1.9e-44 183.7 209 51.7
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 4.2e-44 182.6 197 51.8
Ca_21146_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 2.1e-43 180.3 104 86.5
Manes.06G030800 Manihot esculenta HOM05D004690 ORTHO05D005527 7.9e-43 178.3 109 83.5
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 3.3e-41 172.9 204 46.6
Aa31LG3G8690 Aethionema arabicum HOM05D004690 ORTHO05D005527 4.3e-41 172.6 115 73.9
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 4.5e-38 162.5 207 44.9
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 2.9e-37 159.8 179 47.5
Actinidia24377 Actinidia chinensis HOM05D004690 ORTHO05D005527 3.7e-32 142.9 104 75.0
Actinidia38313 Actinidia chinensis HOM05D004690 ORTHO05D005527 4.5e-30 136.0 237 44.7
PGSC0003DMG400017027 Solanum tuberosum HOM05D004690 ORTHO05D005527 3.6e-27 126.3 67 92.5
SEGI_13735 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 6.1e-27 125.6 132 50.8
PRCOL_00002519 Prasinoderma coloniale HOM05D004690 ORTHO05D005527 1.0e-26 124.8 181 37.0
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 5.7e-25 119.0 91 65.9
Carub.0007s0984 Capsella rubella HOM05D004690 ORTHO05D005527 2.8e-24 116.7 175 49.7
Hma1.2p1_0028F.1_g017670 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 1.1e-23 114.8 156 54.5
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 1.2e-19 101.3 154 35.1
Ca_21142_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 2.7e-19 100.1 129 57.4
HanXRQChr10g0314901 Helianthus annuus HOM05D000214 ORTHO05D000131 3.6e-19 99.8 82 65.9
Nn8g39976 Nelumbo nucifera HOM05D004690 ORTHO05D005527 4.7e-19 99.4 142 52.8
Cre01.g001550 Chlamydomonas reinhardtii HOM05D004690 ORTHO05D005527 3.3e-17 93.2 147 34.7
SEGI_33455 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 6.5e-13 79.0 87 58.6
BcaB06g27963 Brassica carinata HOM05D004690 ORTHO05D005527 2.5e-12 77.0 68 60.3
Dinv41359 Davidia involucrata HOM05D004690 ORTHO05D005527 2.1e-11 73.9 76 60.5
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 2.2e-08 63.9 155 31.0
A02p43620 Brassica napus HOM05D004690 ORTHO05D005527 4.8e-08 62.8 44 65.9
A02p43630 Brassica napus HOM05D004690 ORTHO05D005527 4.8e-08 62.8 44 65.9
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 1.8e-07 60.8 169 26.0
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 2.4e-07 60.5 152 31.6
FAN23G1872 Fragaria x ananassa HOM05D004690 ORTHO05D005527 3.1e-07 60.1 129 39.5
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 4.1e-07 59.7 219 24.2
Oeu054266.1 Olea europaea HOM05D004690 ORTHO05D005527 4.1e-07 59.7 127 40.2
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 5.3e-07 59.3 137 31.4
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 5.3e-07 59.3 198 26.8
Medtr7g017820 Medicago truncatula HOM05D004690 ORTHO05D005527 7.0e-07 58.9 33 87.9
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 7.0e-07 58.9 223 26.0
BolC2t11481H Brassica oleracea HOM05D004690 ORTHO05D005527 9.1e-07 58.5 38 71.1
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 2.7e-06 57.0 187 27.3
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 2.7e-06 57.0 283 24.7
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 2.7e-06 57.0 162 32.1
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 2.7e-06 57.0 212 26.4
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 3.5e-06 56.6 171 28.7
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 3.5e-06 56.6 199 27.1
C06p03190 Brassica napus HOM05D004690 ORTHO05D005527 4.5e-06 56.2 29 86.2
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 4.5e-06 56.2 113 33.6
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 4.5e-06 56.2 113 33.6
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 4.5e-06 56.2 113 33.6
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 7.7e-06 55.5 199 26.6


User provided reference genes

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