Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RIX38N Arachis hypogaea HOM05D004483 ORTHO05D005609 4.2e-56 221.1 110 100.0
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 2.1e-34 149.1 86 88.4
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 1.9e-32 142.5 80 88.8
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 2.5e-32 142.1 80 88.8
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 2.5e-32 142.1 80 88.8
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 5.6e-32 141.0 80 87.5
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 9.5e-32 140.2 80 87.5
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 1.2e-31 139.8 80 86.2
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 1.6e-31 139.4 80 87.5
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 2.8e-31 138.7 80 86.2
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 2.8e-31 138.7 82 81.7
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 8.1e-31 137.1 82 82.9
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 1.1e-30 136.7 80 85.0
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 1.4e-30 136.3 80 86.2
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 1.8e-30 136.0 80 86.2
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 2.3e-30 135.6 82 80.5
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 2.3e-30 135.6 82 80.5
MD02G1233800 Malus domestica HOM05D004483 ORTHO05D005609 2.3e-30 135.6 82 80.5
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 4.0e-30 134.8 80 82.5
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 5.2e-30 134.4 80 83.8
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 5.2e-30 134.4 80 82.5
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 5.2e-30 134.4 80 83.8
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 6.8e-30 134.0 80 82.5
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 6.8e-30 134.0 80 81.2
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 6.8e-30 134.0 80 81.2
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 8.9e-30 133.7 80 80.0
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 8.9e-30 133.7 80 82.5
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 8.9e-30 133.7 80 81.2
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 1.2e-29 133.3 80 82.5
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 1.2e-29 133.3 80 81.2
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 1.2e-29 133.3 80 82.5
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 1.2e-29 133.3 80 82.5
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 2.0e-29 132.5 110 65.5
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 2.0e-29 132.5 110 63.6
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 2.0e-29 132.5 110 63.6
Oeu041518.1 Olea europaea HOM05D004483 ORTHO05D005609 2.0e-29 132.5 80 81.2
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 2.6e-29 132.1 80 81.2
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 2.6e-29 132.1 80 82.5
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 2.6e-29 132.1 80 82.5
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 2.6e-29 132.1 80 82.5
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 2.6e-29 132.1 80 78.8
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 2.6e-29 132.1 80 78.8
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 2.6e-29 132.1 80 80.0
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 3.4e-29 131.7 80 81.2
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 3.4e-29 131.7 82 78.0
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 3.4e-29 131.7 80 80.0
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 4.4e-29 131.3 80 81.2
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 4.4e-29 131.3 80 80.0
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 4.4e-29 131.3 82 78.0
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 4.4e-29 131.3 80 80.0
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 5.8e-29 131.0 80 78.8
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 5.8e-29 131.0 80 82.5
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 7.5e-29 130.6 80 81.2
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 7.5e-29 130.6 80 81.2
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 9.9e-29 130.2 110 62.7
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 9.9e-29 130.2 82 79.3
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 1.3e-28 129.8 80 80.0
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 1.7e-28 129.4 80 78.8
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 1.7e-28 129.4 80 80.0
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 2.2e-28 129.0 80 77.5
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 2.9e-28 128.6 80 81.2
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 2.9e-28 128.6 80 80.0
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 2.9e-28 128.6 80 78.8
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 2.9e-28 128.6 80 78.8
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 2.9e-28 128.6 80 78.8
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 2.9e-28 128.6 81 81.5
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 3.7e-28 128.3 82 75.6
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 3.7e-28 128.3 80 78.8
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 3.7e-28 128.3 80 78.8
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 3.7e-28 128.3 110 62.7
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 3.7e-28 128.3 80 80.0
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 6.4e-28 127.5 80 80.0
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 6.4e-28 127.5 80 77.5
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 8.3e-28 127.1 80 77.5
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 1.4e-27 126.3 82 75.6
Haze_16727 Corylus avellana HOM05D004483 ORTHO05D005609 1.4e-27 126.3 82 75.6
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 1.4e-27 126.3 80 76.2
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 1.9e-27 125.9 80 77.5
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 1.9e-27 125.9 81 80.2
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 3.2e-27 125.2 80 77.5
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 7.1e-27 124.0 82 74.4
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 1.2e-26 123.2 81 76.5
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 1.6e-26 122.9 81 77.8
Haze_25407 Corylus avellana HOM05D004483 ORTHO05D005609 2.1e-26 122.5 82 73.2
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 2.1e-26 122.5 78 74.4
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 2.7e-26 122.1 80 78.8
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 2.7e-26 122.1 82 74.4
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 7.8e-26 120.6 82 70.7
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 1.0e-25 120.2 82 72.0
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 1.0e-25 120.2 82 72.0
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 3.9e-25 118.2 82 70.7
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 5.1e-25 117.9 82 70.7
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 5.1e-25 117.9 97 64.9
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 6.6e-25 117.5 82 70.7
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 6.6e-25 117.5 82 70.7
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 6.6e-25 117.5 82 70.7
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 8.6e-25 117.1 82 73.2
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 1.1e-24 116.7 82 69.5
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 1.5e-24 116.3 82 69.5
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 1.5e-24 116.3 80 71.2
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 1.5e-24 116.3 80 72.5
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 1.5e-24 116.3 82 70.7
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 1.9e-24 115.9 82 69.5
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 1.9e-24 115.9 82 69.5
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 1.9e-24 115.9 82 69.5
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 1.9e-24 115.9 82 69.5
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 1.9e-24 115.9 82 69.5
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.9e-24 115.9 82 73.2
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 2.5e-24 115.5 109 57.8
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 5.6e-24 114.4 82 69.5
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.2e-23 113.2 82 69.5
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 1.6e-23 112.8 69 79.7
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 6.2e-23 110.9 118 55.1
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 8.1e-23 110.5 110 56.4
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 1.1e-22 110.2 80 67.5
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 2.4e-22 109.0 80 67.5
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 5.2e-22 107.8 82 67.1
arahy.Tifrunner.gnm1.ann1.LP3G76 Arachis hypogaea HOM05D004483 ORTHO05D083770 1.2e-21 106.7 94 64.9
Cfa003690 Carpinus fangiana HOM05D004483 ORTHO05D005609 2.0e-21 105.9 82 70.7
Haze_15797 Corylus avellana HOM05D004483 ORTHO05D005609 3.4e-21 105.1 82 67.1
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 4.4e-21 104.8 80 65.0
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 4.4e-21 104.8 110 55.5
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 2.9e-20 102.1 80 61.2
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 7.1e-19 97.4 110 50.0
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 1.6e-15 86.3 55 74.5
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 2.8e-15 85.5 50 86.0
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 1.4e-14 83.2 50 82.0
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 2.4e-14 82.4 112 44.6
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 4.9e-12 74.7 81 45.7
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 3.2e-11 72.0 95 51.6
arahy.Tifrunner.gnm1.ann1.AX0BTM Arachis hypogaea HOM05D004483 ORTHO05D005609 4.6e-10 68.2 35 91.4
Peaxi162Scf00040g00102 Petunia axillaris HOM05D004483 ORTHO05D005609 4.6e-10 68.2 49 67.3
C09p59550 Brassica napus HOM05D004483 ORTHO05D005609 3.9e-09 65.1 95 46.3
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 4.0e-06 55.1 50 52.0
Medtr5g046460 Medicago truncatula HOM05D004483 ORTHO05D005609 9.0e-06 53.9 30 86.7


User provided reference genes

Program Settings