Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 1.3e-201 706.4 417 100.0
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 2.3e-142 509.6 417 81.3
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 1.2e-90 337.8 418 58.6
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 2.6e-90 336.7 417 62.4
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 5.9e-90 335.5 416 58.9
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 1.3e-84 317.8 415 60.5
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 4.5e-82 309.3 419 54.2
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 1.0e-78 298.1 415 56.6
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 3.7e-76 289.7 415 56.6
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 6.3e-76 288.9 416 53.6
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 1.1e-75 288.1 414 58.0
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 7.9e-71 271.9 422 53.1
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 7.9e-71 271.9 422 53.1
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 1.8e-70 270.8 415 54.0
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 1.8e-70 270.8 417 55.2
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 1.4e-67 261.2 415 53.3
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 1.4e-67 261.2 417 52.3
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 3.1e-67 260.0 417 53.7
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 4.1e-67 259.6 415 54.5
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.6e-66 257.7 415 53.5
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 2.0e-66 257.3 427 52.0
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 2.6e-66 256.9 417 52.3
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 3.5e-66 256.5 417 53.2
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.5e-66 256.1 436 50.9
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 1.3e-65 254.6 423 52.0
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 5.0e-65 252.7 424 51.9
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 1.1e-64 251.5 369 56.6
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 2.5e-64 250.4 411 53.8
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 2.5e-64 250.4 375 55.2
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 9.4e-64 248.4 415 52.8
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 9.4e-64 248.4 421 51.5
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 1.6e-63 247.7 423 52.0
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 2.7e-63 246.9 435 50.3
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.7e-63 246.9 436 50.5
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 8.0e-63 245.4 442 50.2
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 8.0e-63 245.4 423 51.3
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 1.8e-62 244.2 417 51.3
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.8e-62 244.2 423 50.8
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.0e-61 240.7 415 51.6
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 2.0e-61 240.7 415 51.6
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 3.3e-61 240.0 421 50.8
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 3.3e-61 240.0 418 50.7
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 3.3e-61 240.0 419 50.4
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 4.4e-61 239.6 420 50.2
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 7.5e-61 238.8 415 50.4
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 1.7e-60 237.7 415 50.4
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 2.2e-60 237.3 443 49.0
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 4.8e-60 236.1 356 56.2
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 4.8e-60 236.1 415 50.4
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 4.8e-60 236.1 418 49.5
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 6.3e-60 235.7 417 50.6
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 6.3e-60 235.7 415 51.1
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 6.3e-60 235.7 406 50.7
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 8.2e-60 235.3 415 50.8
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 1.1e-59 235.0 357 57.4
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 2.4e-59 233.8 430 49.3
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 3.1e-59 233.4 420 49.8
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 3.1e-59 233.4 469 36.0
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 3.1e-59 233.4 412 47.6
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 5.3e-59 232.6 419 48.7
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 1.6e-58 231.1 419 49.4
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 2.0e-58 230.7 425 49.6
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 2.7e-58 230.3 429 44.1
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 5.9e-58 229.2 431 48.5
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 1.3e-57 228.0 425 48.9
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 1.3e-57 228.0 421 48.5
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 2.2e-57 227.3 417 49.6
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 2.9e-57 226.9 354 53.4
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 3.8e-57 226.5 404 50.0
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 6.5e-57 225.7 431 48.5
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 6.5e-57 225.7 415 49.6
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 6.5e-57 225.7 428 47.9
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 8.5e-57 225.3 430 47.9
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 1.5e-56 224.6 418 48.6
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 2.5e-56 223.8 420 50.5
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 5.5e-56 222.6 357 52.9
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 7.2e-56 222.2 425 48.5
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 9.4e-56 221.9 359 51.0
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 1.2e-55 221.5 415 48.7
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 4.7e-55 219.5 182 65.4
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.8e-54 217.6 402 49.5
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 1.2e-53 214.9 416 48.8
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 1.5e-53 214.5 353 53.5
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 2.0e-53 214.2 424 47.2
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 3.4e-53 213.4 414 47.6
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 1.7e-52 211.1 416 49.8
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 8.3e-52 208.8 417 47.7
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 1.8e-51 207.6 416 48.8
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 4.5e-50 203.0 401 49.1
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 8.6e-49 198.7 357 43.4
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 1.9e-48 197.6 418 47.6
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 3.2e-48 196.8 421 44.4
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.8e-47 193.7 300 41.0
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 1.0e-46 191.8 424 45.3
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.8e-46 191.0 379 48.5
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 2.3e-46 190.7 316 39.6
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 5.2e-46 189.5 414 46.4
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 9.8e-45 185.3 414 46.9
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 2.8e-44 183.7 356 34.8
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 6.3e-44 182.6 414 45.9
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 8.3e-44 182.2 371 49.3
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 7.0e-43 179.1 352 48.0
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 2.0e-42 177.6 290 40.0
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 1.3e-41 174.9 275 40.7
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 8.6e-41 172.2 414 44.9
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 1.9e-40 171.0 390 45.9
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 2.5e-40 170.6 235 41.7
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 7.3e-40 169.1 246 40.7
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.6e-39 167.9 441 30.4
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 6.8e-38 162.5 204 47.1
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.2e-37 161.8 415 44.3
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.7e-36 157.9 315 51.4
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 2.9e-36 157.1 359 45.1
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 6.2e-31 139.4 184 46.7
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 3.4e-29 133.7 122 51.6
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 1.1e-27 128.6 125 55.2
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 1.6e-26 124.8 147 49.7
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 2.7e-26 124.0 128 46.9
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 7.8e-26 122.5 266 53.8
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 6.6e-25 119.4 316 46.8
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 4.3e-24 116.7 266 50.8
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 4.7e-23 113.2 363 41.6
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 1.2e-21 108.6 98 54.1
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 2.2e-20 104.4 159 73.6
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 4.9e-20 103.2 63 81.0
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 3.2e-19 100.5 161 39.1
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 7.8e-18 95.9 152 40.8
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.3e-17 94.4 156 71.2
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.0e-17 94.0 153 40.5
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 9.5e-16 89.0 152 38.8
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 4.0e-14 83.6 84 52.4
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.3e-12 78.6 128 77.3
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 2.1e-10 71.2 88 43.2
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 7.8e-10 69.3 134 55.2
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.3e-09 67.8 121 77.7
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.1e-07 61.2 44 61.4
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 4.7e-07 60.1 35 80.0
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 6.2e-07 59.7 53 52.8


User provided reference genes

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