Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.L81EPG Arachis hypogaea HOM05D003858 ORTHO05D005878 1.3e-122 443.4 265 100.0
arahy.Tifrunner.gnm1.ann1.RIH0QL Arachis hypogaea HOM05D003858 ORTHO05D015239 1.3e-122 443.4 265 100.0
arahy.Tifrunner.gnm1.ann1.LEEI49 Arachis hypogaea HOM05D003858 ORTHO05D005878 2.2e-114 416.0 265 94.0
Ca_07893_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 1.3e-87 327.0 192 83.3
Atru.chr9.1128 Acer truncatum HOM05D003858 ORTHO05D005878 6.8e-84 314.7 271 67.9
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 2.6e-83 312.8 263 70.3
COL.COLO4_28121 Corchorus olitorius HOM05D003858 ORTHO05D005878 5.8e-83 311.6 263 70.0
Glyma.09G261800 Glycine max HOM05D003858 ORTHO05D005878 7.5e-83 311.2 269 72.5
Glyma.18G230300 Glycine max HOM05D003858 ORTHO05D005878 1.7e-82 310.1 269 76.2
Medtr7g090710 Medicago truncatula HOM05D003858 ORTHO05D005878 1.7e-82 310.1 270 73.3
Eucgr.E01497 Eucalyptus grandis HOM05D003858 ORTHO05D005878 2.4e-81 306.2 266 72.9
Gorai.003G120600 Gossypium raimondii HOM05D003858 ORTHO05D005878 5.4e-81 305.1 273 71.1
MELO3C002182.2 Cucumis melo HOM05D003858 ORTHO05D005878 4.6e-80 302.0 263 69.2
VMungo1383G3568 Vigna mungo HOM05D003858 ORTHO05D005878 6.0e-80 301.6 192 79.7
CiPaw.15G056500 Carya illinoinensis HOM05D003858 ORTHO05D005878 1.0e-79 300.8 265 66.0
Haze_09759 Corylus avellana HOM05D003858 ORTHO05D005878 1.0e-79 300.8 265 64.2
CiPaw.12G042900 Carya illinoinensis HOM05D003858 ORTHO05D005878 1.3e-79 300.4 265 66.0
Sed0027713 Sechium edule HOM05D003858 ORTHO05D005878 1.3e-79 300.4 264 66.7
Phvul.008G067600 Phaseolus vulgaris HOM05D003858 ORTHO05D005878 3.0e-79 299.3 269 73.6
Hund02439 Selenicereus undatus HOM05D003858 ORTHO05D005878 5.0e-79 298.5 265 67.5
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 6.6e-79 298.1 272 69.5
Oeu001550.1 Olea europaea HOM05D003858 ORTHO05D005878 1.1e-78 297.4 267 71.2
VMungo1383G2243 Vigna mungo HOM05D003858 ORTHO05D005878 1.5e-78 297.0 269 64.3
Gohir.A03G052800 Gossypium hirsutum HOM05D003858 ORTHO05D005878 1.9e-78 296.6 272 66.2
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 4.3e-78 295.4 265 62.3
TPR.G2433 Trifolium pratense HOM05D003858 ORTHO05D005878 4.3e-78 295.4 269 64.7
Manes.06G119400 Manihot esculenta HOM05D003858 ORTHO05D005878 5.6e-78 295.0 266 68.0
Lalb_Chr01g0021111 Lupinus albus HOM05D003858 ORTHO05D005878 1.2e-77 293.9 266 66.5
TAR371G0204 Trochodendron aralioides HOM05D003858 ORTHO05D005878 1.6e-77 293.5 276 63.4
Gohir.D03G114300 Gossypium hirsutum HOM05D003858 ORTHO05D005878 2.1e-77 293.1 275 66.2
SGA_v2.0_scaffold28G11963 Striga asiatica HOM05D003858 ORTHO05D005878 2.1e-77 293.1 261 70.9
Aqoxy3G00800 Aquilegia oxysepala HOM05D003858 ORTHO05D005878 3.6e-77 292.4 273 61.5
Cpa.g.sc250.13 Carica papaya HOM05D003858 ORTHO05D005878 4.7e-77 292.0 265 70.6
Thecc.03G129000 Theobroma cacao HOM05D003858 ORTHO05D005878 6.2e-77 291.6 273 63.0
SalBow6G4120 Salvia bowleyana HOM05D003858 ORTHO05D005878 8.0e-77 291.2 266 68.8
Duzib205G0757 Durio zibethinus HOM05D003858 ORTHO05D005878 1.1e-76 290.8 239 65.3
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 4.0e-76 288.9 266 67.7
PGR004G1062 Punica granatum HOM05D003858 ORTHO05D005878 6.8e-76 288.1 266 69.2
MD14G1157300 Malus domestica HOM05D003858 ORTHO05D005878 2.0e-75 286.6 265 70.2
Rhsim12G0174400 Rhododendron simsii HOM05D003858 ORTHO05D005878 2.0e-75 286.6 194 73.2
Potri.015G096100 Populus trichocarpa HOM05D003858 ORTHO05D005878 2.6e-75 286.2 266 71.8
CsaV3_1G007630 Cucumis sativus L. HOM05D003858 ORTHO05D005878 3.4e-75 285.8 171 79.5
SGA_v2.0_scaffold2G01192 Striga asiatica HOM05D003858 ORTHO05D005878 4.4e-75 285.4 265 69.4
TWI23G0194 Tripterygium wilfordii HOM05D003858 ORTHO05D005878 9.8e-75 284.3 284 59.9
HanXRQChr02g0034711 Helianthus annuus HOM05D003858 ORTHO05D005878 1.3e-74 283.9 268 67.5
Actinidia08869 Actinidia chinensis HOM05D003858 ORTHO05D005878 1.7e-74 283.5 189 76.7
Nn4g22329 Nelumbo nucifera HOM05D003858 ORTHO05D005878 2.9e-74 282.7 273 67.0
Rhsim10G0051500 Rhododendron simsii HOM05D003858 ORTHO05D005878 3.7e-74 282.3 185 74.6
Migut.N03254 Erythranthe guttata HOM05D003858 ORTHO05D005878 4.9e-74 282.0 174 79.3
vmacro16677 Vaccinium macrocarpon HOM05D003858 ORTHO05D005878 4.9e-74 282.0 163 83.4
CANSAT80G0729 Cannabis sativa HOM05D003858 ORTHO05D005878 1.4e-73 280.4 233 73.4
Sabra15G0116900 Salix brachista HOM05D003858 ORTHO05D005878 1.4e-73 280.4 266 68.0
CSS0032323 Camellia sinensis var. sinensis HOM05D003858 ORTHO05D005878 1.9e-73 280.0 280 63.2
ECA247G4076 Erigeron canadensis HOM05D003858 ORTHO05D005878 1.9e-73 280.0 267 67.8
RcHm_v2.0_Chr7g0190211 Rosa chinensis HOM05D003858 ORTHO05D005878 2.4e-73 279.6 265 67.2
Nitab4.5_0005642g0040 Nicotiana tabacum HOM05D003858 ORTHO05D005878 3.2e-73 279.3 185 72.4
FvH4_5g08310 Fragaria vesca HOM05D003858 ORTHO05D005878 4.1e-73 278.9 265 66.0
Cc10_g13400 Coffea canephora HOM05D003858 ORTHO05D005878 5.4e-73 278.5 267 62.9
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 5.4e-73 278.5 265 61.9
FAN08G1590 Fragaria x ananassa HOM05D003858 ORTHO05D005878 5.4e-73 278.5 265 66.0
Sopen08g029150 Solanum pennellii HOM05D003858 ORTHO05D005878 9.2e-73 277.7 171 77.8
PGSC0003DMG400012349 Solanum tuberosum HOM05D003858 ORTHO05D005878 9.2e-73 277.7 266 63.9
DCAR_001872 Daucus carota HOM05D003858 ORTHO05D005878 3.5e-72 275.8 273 61.2
Nitab4.5_0006042g0010 Nicotiana tabacum HOM05D003858 ORTHO05D005878 4.6e-72 275.4 231 67.1
Dinv23145 Davidia involucrata HOM05D003858 ORTHO05D005878 7.8e-72 274.6 273 68.5
Peaxi162Scf00119g00520 Petunia axillaris HOM05D003858 ORTHO05D005878 1.7e-71 273.5 193 71.0
TPR.G23280 Trifolium pratense HOM05D003858 ORTHO05D005878 2.3e-71 273.1 168 80.4
Sc10g0010460 Simmondsia chinensis HOM05D003858 ORTHO05D005878 3.0e-71 272.7 266 66.9
AUR62003032 Chenopodium quinoa HOM05D003858 ORTHO05D005878 3.9e-71 272.3 179 74.9
QL10p002959 Quercus lobata HOM05D003858 ORTHO05D005878 5.1e-71 271.9 264 60.6
THA.LOC104800505 Tarenaya hassleriana HOM05D003858 ORTHO05D005878 5.1e-71 271.9 266 63.2
Hma1.2p1_0014F.1_g009460 Hydrangea macrophylla HOM05D003858 ORTHO05D005878 8.6e-71 271.2 266 68.4
AUR62028258 Chenopodium quinoa HOM05D003858 ORTHO05D005878 1.1e-70 270.8 179 74.3
CAN.G774.2 Capsicum annuum HOM05D003858 ORTHO05D005878 1.5e-70 270.4 167 76.6
Prupe.5G151200 Prunus persica HOM05D003858 ORTHO05D005878 1.5e-70 270.4 269 68.0
CDE05G1919 Ceratophyllum demersum HOM05D003858 ORTHO05D015239 1.9e-70 270.0 262 60.7
Lj5C96T4 Lonicera japonica HOM05D003858 ORTHO05D005878 1.9e-70 270.0 267 59.9
Actinidia36803 Actinidia chinensis HOM05D003858 ORTHO05D015239 2.5e-70 269.6 182 75.8
unitig_21.g20184 Utricularia gibba HOM05D003858 ORTHO05D005878 2.5e-70 269.6 267 65.5
Solyc08g080850.4 Solanum lycopersicum HOM05D003858 ORTHO05D005878 3.3e-70 269.2 267 63.3
BcaB06g28028 Brassica carinata HOM05D003858 ORTHO05D005878 9.5e-70 267.7 171 77.2
TAR629G0830 Trochodendron aralioides HOM05D003858 ORTHO05D005878 9.5e-70 267.7 202 67.3
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 6.2e-69 265.0 234 66.2
DCAR_021618 Daucus carota HOM05D003858 ORTHO05D005878 8.1e-69 264.6 242 60.3
BcaC02g08384 Brassica carinata HOM05D003858 ORTHO05D005878 1.8e-68 263.5 156 81.4
C04p54940 Brassica napus HOM05D003858 ORTHO05D005878 1.8e-68 263.5 156 81.4
BraA04t17533Z Brassica rapa HOM05D003858 ORTHO05D005878 3.1e-68 262.7 176 75.0
RcHm_v2.0_Chr5g0020401 Rosa chinensis HOM05D003858 ORTHO05D005878 5.2e-68 261.9 265 56.6
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 2.0e-67 260.0 166 75.9
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 2.0e-67 260.0 265 58.5
Thhalv10000120m.g Eutrema salsugineum HOM05D003858 ORTHO05D005878 2.0e-67 260.0 156 78.8
MD06G1142000 Malus domestica HOM05D003858 ORTHO05D005878 2.6e-67 259.6 265 66.8
BolC4t27030H Brassica oleracea HOM05D003858 ORTHO05D005878 3.4e-67 259.2 169 76.3
Ah.01g020640 Amaranthus hybridus HOM05D003858 ORTHO05D005878 4.4e-67 258.8 266 62.4
Lsat_1_v5_gn_1_28960 Lactuca sativa HOM05D003858 ORTHO05D005878 4.4e-67 258.8 174 74.7
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 9.9e-67 257.7 156 79.5
A04p19370 Brassica napus HOM05D003858 ORTHO05D005878 1.3e-66 257.3 265 66.0
FAN20G1682 Fragaria x ananassa HOM05D003858 ORTHO05D005878 6.4e-66 255.0 268 56.7
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 8.3e-66 254.6 234 60.3
Aa31sc86G50 Aethionema arabicum HOM05D003858 ORTHO05D005878 1.4e-65 253.8 156 77.6
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 1.9e-65 253.4 265 58.9
FvH4_5g16770 Fragaria vesca HOM05D003858 ORTHO05D005878 1.9e-65 253.4 268 57.1
CDE05G2345 Ceratophyllum demersum HOM05D003858 ORTHO05D005878 2.4e-65 253.1 261 54.4
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 3.2e-65 252.7 236 63.1
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 4.1e-65 252.3 265 58.1
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 7.1e-65 251.5 236 62.3
FAN16G2509 Fragaria x ananassa HOM05D003858 ORTHO05D005878 3.5e-64 249.2 268 56.0
ClCG01G014690 Citrullus lanatus HOM05D003858 ORTHO05D005878 1.0e-63 247.7 264 61.4
MBI07_g31017_MAGBIO Magnolia biondii HOM05D003858 ORTHO05D005878 7.3e-62 241.5 277 60.3
Lj7A11G39 Lonicera japonica HOM05D003858 ORTHO05D005878 9.5e-62 241.1 162 71.0
Lj7A12G16 Lonicera japonica HOM05D003858 ORTHO05D005878 9.5e-62 241.1 167 69.5
SalBow7G4372 Salvia bowleyana HOM05D003858 ORTHO05D005878 2.8e-61 239.6 243 65.4
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 2.8e-61 239.6 197 63.5
Aa31LG8G17300 Aethionema arabicum HOM05D003858 ORTHO05D005878 3.1e-60 236.1 265 62.3
FAN18G4532 Fragaria x ananassa HOM05D003858 ORTHO05D005878 4.4e-59 232.3 245 62.4
EL10Ac9g21903 Beta vulgaris HOM05D003858 ORTHO05D005878 9.9e-59 231.1 166 68.1
FAN04G1110 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.7e-58 230.3 245 62.4
SHI21468 Sapria himalayana HOM05D003858 ORTHO05D005878 2.9e-58 229.6 281 52.3
Psat3g110800 Pisum sativum HOM05D003858 ORTHO05D005878 8.7e-55 218.0 269 53.9
RcHm_v2.0_Chr5g0063291 Rosa chinensis HOM05D003858 ORTHO05D005878 1.5e-54 217.2 268 49.6
Mapoly0084s0039 Marchantia polymorpha HOM05D003858 ORTHO05D005878 1.3e-53 214.2 194 55.7
TPR.G21069 Trifolium pratense HOM05D003858 ORTHO05D005878 1.1e-52 211.1 302 53.6
Medtr7g076710 Medicago truncatula HOM05D003858 ORTHO05D005878 5.3e-52 208.8 193 60.6
CBR_g61467 Chara braunii HOM05D003858 ORTHO05D005878 2.6e-51 206.5 158 60.8
SHI21367 Sapria himalayana HOM05D003858 ORTHO05D005878 5.8e-51 205.3 200 55.0
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 4.9e-50 202.2 271 50.9
SMO117G0291 Selaginella moellendorffii HOM05D003858 ORTHO05D005878 7.1e-49 198.4 169 59.8
Zm00001eb103140 Zea mays HOM05D003858 ORTHO05D005878 4.8e-45 185.7 274 48.2
Pp3c21_1450 Physcomitrium patens HOM05D003858 ORTHO05D005878 8.1e-45 184.9 185 53.0
AUR62007839 Chenopodium quinoa HOM05D003858 ORTHO05D005878 4.0e-44 182.6 111 80.2
Cre13.g580900 Chlamydomonas reinhardtii HOM05D003858 ORTHO05D005878 4.0e-44 182.6 156 55.8
Os07g0162300 Oryza sativa ssp. japonica HOM05D003858 ORTHO05D005878 4.0e-44 182.6 275 46.9
Zm00001eb256840 Zea mays HOM05D003858 ORTHO05D005878 4.5e-43 179.1 274 47.1
PRCOL_00003781 Prasinoderma coloniale HOM05D003858 ORTHO05D005878 1.3e-42 177.6 157 52.2
AagrBONN_evm.TU.Sc2ySwM_228.678 Anthoceros agrestis HOM05D003858 ORTHO05D005878 1.7e-42 177.2 186 45.7
HPP92_020969 Vanilla planifolia HOM05D003858 ORTHO05D005878 1.7e-42 177.2 267 43.1
ATR0559G302 Amborella trichopoda HOM05D003858 ORTHO05D005878 2.2e-42 176.8 282 44.3
Ca_28300_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 5.4e-41 172.2 266 47.7
Cc10_g13370 Coffea canephora HOM05D003858 ORTHO05D015239 7.4e-38 161.8 92 78.3
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 9.6e-38 161.4 164 50.6
PSO724G0964 Papaver somniferum HOM05D003858 ORTHO05D005878 2.4e-36 156.8 200 48.0
PSO724G1140 Papaver somniferum HOM05D003858 ORTHO05D005878 2.6e-35 153.3 239 42.3
Haze_27048 Corylus avellana HOM05D003858 ORTHO05D005878 4.9e-34 149.1 161 44.7
Medtr7g012400 Medicago truncatula HOM05D003858 ORTHO05D005878 4.9e-34 149.1 193 50.3
PSO170G3101 Papaver somniferum HOM05D003858 ORTHO05D005878 4.9e-34 149.1 102 70.6
PSO724G1315 Papaver somniferum HOM05D003858 ORTHO05D005878 1.9e-33 147.1 241 41.1
FAN08G1067 Fragaria x ananassa HOM05D003858 ORTHO05D015239 3.5e-32 142.9 273 38.1
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 3.9e-31 139.4 234 41.0
FAN13G2455 Fragaria x ananassa HOM05D003858 ORTHO05D015239 8.7e-31 138.3 95 70.5
RcHm_v2.0_Chr5g0063241 Rosa chinensis HOM05D003858 ORTHO05D005878 1.3e-29 134.4 123 57.7
PSO421G0376 Papaver somniferum HOM05D003858 ORTHO05D015239 1.4e-28 131.0 90 67.8
DCAR_029022 Daucus carota HOM05D003858 ORTHO05D005878 2.6e-27 126.7 237 37.1
Cfa023770 Carpinus fangiana HOM05D003858 ORTHO05D005878 1.7e-26 124.0 157 40.8
FAN08G1033 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.1e-22 111.3 69 73.9
BolC8t51470H Brassica oleracea HOM05D003858 ORTHO05D015239 4.3e-22 109.4 122 48.4
FAN21G1362 Fragaria x ananassa HOM05D003858 ORTHO05D207154 4.3e-22 109.4 261 33.7
PSO675G5360 Papaver somniferum HOM05D003858 ORTHO05D015239 5.3e-20 102.4 218 38.5
FvH4_5g25261 Fragaria vesca HOM05D003858 ORTHO05D015239 1.4e-17 94.4 70 65.7
TAR625G0709 Trochodendron aralioides HOM05D003858 ORTHO05D015239 1.9e-17 94.0 45 91.1
HanXRQChr13g0426321 Helianthus annuus HOM05D003858 ORTHO05D000008 1.7e-13 80.9 75 50.7
ECA247G3834 Erigeron canadensis HOM05D000031 ORTHO05D000030 3.7e-13 79.7 89 44.9
ECA247G3860 Erigeron canadensis HOM05D000031 ORTHO05D000030 1.4e-12 77.8 96 46.9
BcaC07g40899 Brassica carinata HOM05D003858 ORTHO05D015239 4.1e-12 76.3 126 38.9
Zm00001eb256810 Zea mays HOM05D003858 ORTHO05D005878 2.2e-10 70.5 148 37.8
FAN13G0915 Fragaria x ananassa HOM05D003858 ORTHO05D204259 2.9e-10 70.1 137 38.7
CiPaw.05G188800 Carya illinoinensis HOM05D003858 ORTHO05D127864 9.7e-06 55.1 24 100.0


User provided reference genes

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